MD15G1076300.v1.1

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000166
Physical Location & Seq
Forward (+)
5183364 .. 5185838
2475 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1076300.v1.1.491

Sequence Viewer

Length: 2475 bp
ATGACCGTGTTCTCTAAATTTAGTTCAGCTCTCTGCAGCCAATCCCATTCCCCTCTCTCATCTCAAATGGCTACTCTGTTTCTCATTTTTCTTCTCTCTCTCGCCATTAATTCTCCACCTTCGTCTTCAACCTCCAACACTCTGAGCAGAGCTTCCTCCCTCTCTGTCGAGAAACCAGAAGATGTTCTAATTTCACCTGATGGAGTTTTCACCGCCGGCTTTCACCAAGTTGGTAACAATTCATATTGCTTTGCCATTTGGTTCTCCGAGCCTTCATCATCCTCCGACCGCCACCAAAACCCCACCGTTGTCTGGACTGCCAATCGCGACCGTCCAGTCAATGGAAAACGCTCAAAACTCTCCCTCCTCAAAACCGGTAACCTCATCTTAACTGATGCTGGTCAGTCCATCGTTTGGGCCACAACCACCACATCACTCTCACCGGCTCACTTAACCCTCCACAGCTCCGGCAACCTGGTTTTACGAAACTCCGATGATCATGTCGTTTTGTGGCAGAGCTTTGATTCTCCGACCGACACCCTTCTTCCGCTCCAACCCTTCACCAGGAATGCAATGCTTGTCTCCACAAGAAGCCAGAGCAACTCCTCCTCCGGTTTCTACAAGCTCTTCTTCAACAATGACAACCTCCTCCGTATACTTTTTGACGGTCTCGAGGTCTCCAGCGTCTACTGGCCCGACCCTTCTCGTGTGAGCTGGGACAATGCAAGGTCCACCTACAACAACACCAGAACAGCCATGCTCGATTCTTTAGGCAGTTTTGTCTCGTCGGACAACTTGACTTTTATGTCAACTGATTACGGTGCTAGGTTGCAGAGGATATTGAGGATTGATTTTGATGGAAATGTTCGATTGTATAGTCGCGAAAGGGTGGGGGAAAAATGGGTGGTTTCATGGCAGGCCATTTCGGATCCATGCAAGGTTCATGGGACTTGTGGAGCAAACAGCGTGTGTAGCTATGACCTCGGTTTTGGTAGGAAATGCTTGTGCCTTCCAGGGTATAATATGAGAAATCTTACTGATTGGTCCTTCGGGTGCGAACCTCAATTCGATCTCTCTTACACGAAAGGTAATGCGTCTAGCTTCCTCAAACTTGCACAAGTTGAGTTCAATGGTTATGATTTCAACTCCTACACAAATTACAGTTACATGGAGTGTGAGAGCATATGCTTGAAACTGGAAAACTGCAAGGGGTTTCAGTACACATTTGACCGTGGAAATGGTTTTTATAACTGTAATCCCAAGACGCAATTGCGAAGTGGGCACATGTCGGATTCTCAAGGGTACCTCTATCTGAGACTGCCTAAAGCCTTCCTCCTCTCGAATGGCTCTGGCATAAAGGCACCAAAAGACTACGGGCTTATATGTACAGACAGAGTCATTGATCTCAACAGAAATTACGTGAAAAACCATGTTAGTAAGCCAGTGAAGTTCCTGCTTTGGTTTGCTTGTGGAGTGGGAGGGTTTGAGATCGTTTGTATTCTTTTGTTTTTGTGTTTGTTAAATAGTAGAACTCGGAAAAAGTCCAATGAGGATATGCAACAAGGGTACCTTCTTGCTGCAACCGGATTCAAAAGGTTTAGCTACACCGAGCTCAAGAAGGCAACTCGGGGTTTTATTGAAGAAATTGGAAGAGGTGCAGGTGGATTTGTGTACAAAGGTGTATTGGATGACAAACGAGTTGCAGCGGTTAAGCTTCTTAATGAAGCTATTCAAGGAGAAGCTGAGTTTCTAGCAGAAGTTAGCATGCTCGGGAGGCTGAACCATATGCACTTGATAGAAATGTGGGGATATTGTTCAGAGGGAAAGCACAAGCTTCTTGTTTACGAGTACATGGAGCACGGTTCTTTGGCCCAAAATTTGTCTTCGAATGTGCTTGATTGGGAGAAGAGGTTCGAGATTGCTGTGGGCACTGCGAAAGGCCTTGCTTATCTGCACGAGGAGTGCTTGGAGTGGGTTTTGCATTGTGATGTTAAGCCTCAAAACATACTCTTGGATTCAAACTACCAACCAAAAGTTGCAGATTTTGGACTTTCCAAGCTATTTAACAGAGGCGAGCTTAAGAACTCAAGCTTTTCAAGGATAAGAGGAACCAGAGGCTACATTGCGCCGGAGTGGGTGTGCAATCTGCCAATCACATCAAAAGTGGATGTGTATAGTTATGGGATTGTTGTGTTGGAGATGGTGACAGGAAAGAATCCTATGATGGGAGGGGATGCCTTTGATGGTGAGCAGCGAAGACTGATCTCGTGGATGAGGGAGAAGGTAAATGGAACTAGCTCTATCAAACTACAGATAGAAGAGATCATAGACTCTTCGTTTGAAGGCGAATACGATGTGGAGAAGGTAGAAGTTCTTCTGAAAGTAGCTTTACACTGTGTGGAGGAAGACAAAGATGACAGACCAACCATGAGACAAGTTGTTGAGATGCTTTTACACCTTGACGAAGATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

825

Amino Acids

92.65

Weight (kDa)

6.52

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 102 - 191 1e-23 D-mannose binding lectin
S_locus_glycop PF00954 274 - 342 2.2e-06 S-locus glycoprotein domain
Pkinase PF00069 546 - 815 2e-50 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 546 - 817 6.2e-41 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1248
AarI CACCTGC 1 cut(s) 1649
AasI GACNNNNNNGTC 2 cut(s) 335, 805
Acc36I ACCTGC 1 cut(s) 1649
Acc65I GGTACC 2 cut(s) 1302, 1566
AccB1I GGYRCC 3 cut(s) 1302, 1360, 1566
AccB7I CCANNNNNTGG 2 cut(s) 341, 414
AccBSI CCGCTC 1 cut(s) 550
AccI GTMKAC 2 cut(s) 655, 687
AccII CGCG 2 cut(s) 327, 882
AciI CCGC 4 cut(s) 213, 289, 548, 1706
AclWI GGATC 2 cut(s) 923, 936
AcsI RAATTY 2 cut(s) 17, 1876
AdeI CACNNNGTG 1 cut(s) 2398
AfaI GTAC 6 cut(s) 1220, 1304, 1387, 1568, 1673, 1850
AfiI CCNNNNNNNGG 5 cut(s) 312, 341, 414, 564, 2225
AflII CTTAAG 1 cut(s) 2078
AflIII ACRYGT 1 cut(s) 1284
AgeI ACCGGT 1 cut(s) 374
AjnI CCWGG 3 cut(s) 474, 563, 1012
AloI GAACNNNNNNTCC 2 cut(s) 1895, 1927
Alw21I GWGCWC 2 cut(s) 1614, 1860
Alw26I GTCTC 6 cut(s) 586, 674, 682, 787, 1309, 2425
AlwI GGATC 2 cut(s) 923, 936
Ama87I CYCGRG 3 cut(s) 671, 1626, 1769
AoxI GGCC 5 cut(s) 417, 692, 918, 1869, 1939
ApeKI GCWGC 4 cut(s) 36, 1577, 1703, 2251
ApoI RAATTY 2 cut(s) 17, 1876
ArsI GACNNNNNNTTYG 4 cut(s) 971, 1003, 2321, 2353
AseI ATTAAT 1 cut(s) 108
AsiGI ACCGGT 1 cut(s) 374
Asp700I GAANNNNTTC 4 cut(s) 183, 1728, 1910, 2373
Asp718I GGTACC 2 cut(s) 1302, 1566
AspLEI GCGC 1 cut(s) 2128
AspS9I GGNCC 5 cut(s) 417, 693, 729, 1044, 1870
AsuHPI GGTGA 7 cut(s) 186, 202, 215, 432, 553, 2215, 2258
AsuII TTCGAA 1 cut(s) 1886
AvaI CYCGRG 3 cut(s) 671, 1626, 1769
AvaII GGWCC 2 cut(s) 729, 1044
BaeGI GKGCMC 2 cut(s) 1284, 1931
BaeI ACNNNNGTAYC 2 cut(s) 1550, 1583
BamHI GGATCC 1 cut(s) 928
BanI GGYRCC 3 cut(s) 1302, 1360, 1566
BanII GRGCYC 1 cut(s) 1614
BarI GAAGNNNNNNTAC 2 cut(s) 2358, 2390
BauI CACGAG 3 cut(s) 705, 1955, 2266
BbsI GAAGAC 4 cut(s) 117, 1875, 2263, 2412
Bbv12I GWGCWC 2 cut(s) 1614, 1860
BbvI GCAGC 4 cut(s) 48, 1564, 1715, 2263
BccI CCATC 6 cut(s) 194, 416, 851, 2194, 2218, 2237
BciT130I CCWGG 3 cut(s) 476, 565, 1014
BclI TGATCA 1 cut(s) 496
BcoDI GTCTC 6 cut(s) 586, 674, 682, 787, 1309, 2425
BfaI CTAG 4 cut(s) 825, 1098, 1751, 2295
BfmI CTRYAG 2 cut(s) 34, 2309
BfrI CTTAAG 1 cut(s) 2078
BfuAI ACCTGC 1 cut(s) 1649
BisI GCNGC 4 cut(s) 37, 1578, 1704, 2252
BlsI GCNGC 4 cut(s) 38, 1579, 1705, 2253
Bme1390I CCNGG 3 cut(s) 476, 565, 1014
Bme18I GGWCC 2 cut(s) 729, 1044
BmeT110I CYCGRG 3 cut(s) 671, 1626, 1769
BmgT120I GGNCC 5 cut(s) 417, 693, 729, 1044, 1870
BmiI GGNNCC 5 cut(s) 930, 1304, 1362, 1568, 2110
BmrFI CCNGG 3 cut(s) 476, 565, 1014
BmsI GCATC 3 cut(s) 385, 2224, 2436
BpiI GAAGAC 4 cut(s) 117, 1875, 2263, 2412
BpmI CTGGAG 1 cut(s) 664
Bpu14I TTCGAA 1 cut(s) 1886
BpuEI CTTGAG 3 cut(s) 1281, 1598, 2071
BsaAI YACGTR 1 cut(s) 1420
BsaI GGTCTC 2 cut(s) 674, 682
BsaJI CCNNGG 3 cut(s) 982, 1013, 1231
BsaWI WCCGGW 3 cut(s) 374, 611, 1583
BsaXI ACNNNNNCTCC 8 cut(s) 348, 378, 593, 623, 1895, 1925, 2123, 2153
Bsc4I CCNNNNNNNGG 5 cut(s) 312, 341, 414, 564, 2225
Bse118I RCCGGY 3 cut(s) 215, 374, 442
Bse1I ACTGG 4 cut(s) 335, 695, 1200, 1442
Bse3DI GCAATG 2 cut(s) 579, 2121
BseBI CCWGG 3 cut(s) 476, 565, 1014
BseDI CCNNGG 3 cut(s) 982, 1013, 1231
BseGI GGATG 5 cut(s) 278, 1693, 2173, 2239, 2277
BseLI CCNNNNNNNGG 5 cut(s) 312, 341, 414, 564, 2225
BseMI GCAATG 2 cut(s) 579, 2121
BseMII CTCAG 3 cut(s) 134, 1304, 1734
BseNI ACTGG 4 cut(s) 335, 695, 1200, 1442
BseRI GAGGAG 6 cut(s) 356, 595, 598, 638, 1325, 1973
BseSI GKGCMC 2 cut(s) 1284, 1931
BseXI GCAGC 4 cut(s) 48, 1564, 1715, 2263
BseYI CCCAGC 1 cut(s) 714
BsgI GTGCAG 2 cut(s) 1677, 1937
Bsh1236I CGCG 2 cut(s) 327, 882
Bsh1285I CGRYCG 3 cut(s) 289, 331, 534
BshFI GGCC 5 cut(s) 419, 694, 920, 1871, 1941
BshNI GGYRCC 3 cut(s) 1302, 1360, 1566
BshTI ACCGGT 1 cut(s) 374
BsiEI CGRYCG 3 cut(s) 289, 331, 534
BsiHKAI GWGCWC 2 cut(s) 1614, 1860
BsiHKCI CYCGRG 3 cut(s) 671, 1626, 1769
BsiSI CCGG 7 cut(s) 216, 375, 443, 468, 612, 1584, 2129
BslFI GGGAC 2 cut(s) 731, 961
BslI CCNNNNNNNGG 5 cut(s) 312, 341, 414, 564, 2225
BsmAI GTCTC 6 cut(s) 586, 674, 682, 787, 1309, 2425
BsmFI GGGAC 2 cut(s) 731, 961
BsmI GAATGC 1 cut(s) 574
BsnI GGCC 5 cut(s) 419, 694, 920, 1871, 1941
Bso31I GGTCTC 2 cut(s) 674, 682
BsoBI CYCGRG 3 cut(s) 671, 1626, 1769
Bsp119I TTCGAA 1 cut(s) 1886
Bsp1286I GDGCHC 4 cut(s) 1284, 1614, 1860, 1931
Bsp1407I TGTACA 2 cut(s) 1385, 1671
Bsp143I GATC 7 cut(s) 496, 928, 1069, 1402, 1488, 2262, 2322
Bsp68I TCGCGA 2 cut(s) 327, 882
BspACI CCGC 4 cut(s) 213, 289, 548, 1706
BspANI GGCC 5 cut(s) 419, 694, 920, 1871, 1941
BspCNI CTCAG 3 cut(s) 135, 1305, 1735
BspFNI CGCG 2 cut(s) 327, 882
BspLI GGNNCC 5 cut(s) 930, 1304, 1362, 1568, 2110
BspMAI CTGCAG 1 cut(s) 38
BspMI ACCTGC 1 cut(s) 1649
BspPI GGATC 2 cut(s) 923, 936
BspQI GCTCTTC 1 cut(s) 632
BspT104I TTCGAA 1 cut(s) 1886
BspT107I GGYRCC 3 cut(s) 1302, 1360, 1566
BspTI CTTAAG 1 cut(s) 2078
BspTNI GGTCTC 2 cut(s) 674, 682
BsrBI CCGCTC 1 cut(s) 550
BsrDI GCAATG 2 cut(s) 579, 2121
BsrFI RCCGGY 3 cut(s) 215, 374, 442
BsrGI TGTACA 2 cut(s) 1385, 1671
BsrI ACTGG 4 cut(s) 335, 695, 1200, 1442
BssAI RCCGGY 3 cut(s) 215, 374, 442
BssECI CCNNGG 3 cut(s) 982, 1013, 1231
BssMI GATC 7 cut(s) 496, 928, 1069, 1402, 1488, 2262, 2322
BssNAI GTATAC 1 cut(s) 656
BssSI CACGAG 3 cut(s) 705, 1955, 2266
Bst1107I GTATAC 1 cut(s) 656
Bst2BI CACGAG 3 cut(s) 705, 1955, 2266
Bst2UI CCWGG 3 cut(s) 476, 565, 1014
Bst6I CTCTTC 5 cut(s) 632, 1645, 1901, 2313, 2338
BstAFI CTTAAG 1 cut(s) 2078
BstAUI TGTACA 2 cut(s) 1385, 1671
BstBAI YACGTR 1 cut(s) 1420
BstBI TTCGAA 1 cut(s) 1886
BstC8I GCNNGC 4 cut(s) 217, 918, 1766, 2075
BstDEI CTNAG 3 cut(s) 143, 1313, 1743
BstDSI CCRYGG 1 cut(s) 1231
BstEII GGTNACC 1 cut(s) 377
BstENI CCTNNNNNAGG 1 cut(s) 562
BstF5I GGATG 5 cut(s) 278, 1693, 2173, 2239, 2277
BstFNI CGCG 2 cut(s) 327, 882
BstHHI GCGC 1 cut(s) 2128
BstKTI GATC 7 cut(s) 499, 931, 1072, 1405, 1491, 2265, 2325
BstMAI GTCTC 6 cut(s) 586, 674, 682, 787, 1309, 2425
BstMBI GATC 7 cut(s) 496, 928, 1069, 1402, 1488, 2262, 2322
BstMCI CGRYCG 3 cut(s) 289, 331, 534
BstMWI GCNNNNNNNGC 3 cut(s) 972, 1279, 1774
BstNI CCWGG 3 cut(s) 476, 565, 1014
BstNSI RCATGY 2 cut(s) 1288, 1768
BstPI GGTNACC 1 cut(s) 377
BstSCI CCNGG 3 cut(s) 474, 563, 1012
BstSFI CTRYAG 2 cut(s) 34, 2309
BstSLI GKGCMC 2 cut(s) 1284, 1931
BstUI CGCG 2 cut(s) 327, 882
BstV1I GCAGC 4 cut(s) 48, 1564, 1715, 2263
BstV2I GAAGAC 4 cut(s) 117, 1875, 2263, 2412
BstX2I RGATCY 1 cut(s) 928
BstYI RGATCY 1 cut(s) 928
BstZ17I GTATAC 1 cut(s) 656
BsuRI GGCC 5 cut(s) 419, 694, 920, 1871, 1941
BtgI CCRYGG 1 cut(s) 1231
BtsCI GGATG 5 cut(s) 278, 1693, 2173, 2239, 2277
BtsI GCAGTG 1 cut(s) 1929
BtsIMutI CAGTG 3 cut(s) 1449, 1929, 2392
BtuMI TCGCGA 2 cut(s) 327, 882
BveI ACCTGC 1 cut(s) 1649
Cac8I GCNNGC 4 cut(s) 217, 918, 1766, 2075
CfoI GCGC 1 cut(s) 2128
Cfr10I RCCGGY 3 cut(s) 215, 374, 442
Cfr13I GGNCC 5 cut(s) 417, 693, 729, 1044, 1870
CseI GACGC 3 cut(s) 673, 1083, 1273
CsiI ACCWGGT 1 cut(s) 474
Csp6I GTAC 6 cut(s) 1219, 1303, 1386, 1567, 1672, 1849
CspAI ACCGGT 1 cut(s) 374
CviQI GTAC 6 cut(s) 1219, 1303, 1386, 1567, 1672, 1849
DdeI CTNAG 3 cut(s) 143, 1313, 1743
DpnI GATC 7 cut(s) 498, 930, 1071, 1404, 1490, 2264, 2324
DpnII GATC 7 cut(s) 496, 928, 1069, 1402, 1488, 2262, 2322
DraIII CACNNNGTG 1 cut(s) 2398
DrdI GACNNNNNNGTC 2 cut(s) 335, 805
DseDI GACNNNNNNGTC 2 cut(s) 335, 805
Eam1104I CTCTTC 5 cut(s) 632, 1645, 1901, 2313, 2338
EarI CTCTTC 5 cut(s) 632, 1645, 1901, 2313, 2338
Ecl136II GAGCTC 1 cut(s) 1612
Eco147I AGGCCT 1 cut(s) 1941
Eco24I GRGCYC 1 cut(s) 1614
Eco31I GGTCTC 2 cut(s) 674, 682
Eco47I GGWCC 2 cut(s) 729, 1044
Eco53kI GAGCTC 1 cut(s) 1612
Eco88I CYCGRG 3 cut(s) 671, 1626, 1769
Eco91I GGTNACC 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 1612
EcoNI CCTNNNNNAGG 1 cut(s) 562
EcoO65I GGTNACC 1 cut(s) 377
EcoRII CCWGG 3 cut(s) 474, 563, 1012
EcoT38I GRGCYC 1 cut(s) 1614
FalI AAGNNNNNCTT 4 cut(s) 614, 646, 1554, 1586
FaqI GGGAC 2 cut(s) 731, 961
FauNDI CATATG 2 cut(s) 1184, 1785
FbaI TGATCA 1 cut(s) 496
FblI GTMKAC 2 cut(s) 655, 687
Fnu4HI GCNGC 4 cut(s) 37, 1578, 1704, 2252
FokI GGATG 5 cut(s) 265, 1700, 2180, 2246, 2284
FriOI GRGCYC 1 cut(s) 1614
Fsp4HI GCNGC 4 cut(s) 37, 1578, 1704, 2252
FspBI CTAG 4 cut(s) 825, 1098, 1751, 2295
GlaI GCGC 1 cut(s) 2127
GluI GCNGC 4 cut(s) 37, 1578, 1704, 2252
GsaI CCCAGC 1 cut(s) 718
GsuI CTGGAG 1 cut(s) 664
HaeIII GGCC 5 cut(s) 419, 694, 920, 1871, 1941
HapII CCGG 7 cut(s) 216, 375, 443, 468, 612, 1584, 2129
HgaI GACGC 3 cut(s) 673, 1083, 1273
HhaI GCGC 1 cut(s) 2128
Hin6I GCGC 1 cut(s) 2126
HinP1I GCGC 1 cut(s) 2126
HincII GTYRAC 1 cut(s) 810
HindII GTYRAC 1 cut(s) 810
HindIII AAGCTT 3 cut(s) 1712, 1832, 2089
HinfI GANTC 8 cut(s) 524, 764, 1292, 1395, 1587, 2015, 2215, 2330
HpaII CCGG 7 cut(s) 216, 375, 443, 468, 612, 1584, 2129
HphI GGTGA 7 cut(s) 186, 202, 215, 432, 553, 2215, 2258
Hpy166II GTNNAC 7 cut(s) 656, 688, 732, 810, 1221, 1672, 1843
Hpy188III TCNNGA 9 cut(s) 169, 313, 326, 671, 881, 1339, 1615, 1771, 1915
Hpy8I GTNNAC 7 cut(s) 656, 688, 732, 810, 1221, 1672, 1843
Hpy99I CGWCG 1 cut(s) 790
HpyCH4IV ACGT 1 cut(s) 1419
HpyF10VI GCNNNNNNNGC 3 cut(s) 972, 1279, 1774
HpyF3I CTNAG 3 cut(s) 143, 1313, 1743
HpySE526I ACGT 1 cut(s) 1419
HspAI GCGC 1 cut(s) 2126
KpnI GGTACC 2 cut(s) 1306, 1570
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 7 cut(s) 496, 928, 1069, 1402, 1488, 2262, 2322
LguI GCTCTTC 1 cut(s) 632
LmnI GCTCC 4 cut(s) 470, 555, 956, 1855
Lsp1109I GCAGC 4 cut(s) 48, 1564, 1715, 2263
LweI GCATC 3 cut(s) 385, 2224, 2436
MabI ACCWGGT 1 cut(s) 474
MaeI CTAG 4 cut(s) 825, 1098, 1751, 2295
MaeII ACGT 1 cut(s) 1419
MaeIII GTNAC 4 cut(s) 233, 377, 1163, 2203
MalI GATC 7 cut(s) 498, 930, 1071, 1404, 1490, 2264, 2324
MbiI CCGCTC 1 cut(s) 550
MboI GATC 7 cut(s) 496, 928, 1069, 1402, 1488, 2262, 2322
MfeI CAATTG 1 cut(s) 1268
MflI RGATCY 1 cut(s) 928
MhlI GDGCHC 4 cut(s) 1284, 1614, 1860, 1931
MlyI GAGTC 2 cut(s) 1404, 2324
MmeI TCCRAC 7 cut(s) 159, 309, 554, 577, 768, 1269, 2175
MroNI GCCGGC 1 cut(s) 215
MroXI GAANNNNTTC 4 cut(s) 183, 1728, 1910, 2373
MseI TTAA 9 cut(s) 108, 389, 452, 1520, 1710, 1719, 1992, 2064, 2079
MslI CAYNNNNRTG 1 cut(s) 1986
MspA1I CMGCKG 1 cut(s) 1706
MspCI CTTAAG 1 cut(s) 2078
MspI CCGG 7 cut(s) 216, 375, 443, 468, 612, 1584, 2129
MspR9I CCNGG 3 cut(s) 476, 565, 1014
MunI CAATTG 1 cut(s) 1268
Mva1269I GAATGC 1 cut(s) 574
MvaI CCWGG 3 cut(s) 476, 565, 1014
MvnI CGCG 2 cut(s) 327, 882
MwoI GCNNNNNNNGC 3 cut(s) 972, 1279, 1774
NaeI GCCGGC 1 cut(s) 217
NdeI CATATG 2 cut(s) 1184, 1785
NdeII GATC 7 cut(s) 496, 928, 1069, 1402, 1488, 2262, 2322
NgoMIV GCCGGC 1 cut(s) 215
NlaIV GGNNCC 5 cut(s) 930, 1304, 1362, 1568, 2110
NmuCI GTSAC 1 cut(s) 2203
NruI TCGCGA 2 cut(s) 327, 882
NspI RCATGY 2 cut(s) 1288, 1768
NspV TTCGAA 1 cut(s) 1886
PaeI GCATGC 1 cut(s) 1768
PaeR7I CTCGAG 1 cut(s) 671
PaqCI CACCTGC 1 cut(s) 1649
PceI AGGCCT 1 cut(s) 1941
PciI ACATGT 1 cut(s) 1284
PciSI GCTCTTC 1 cut(s) 632
PctI GAATGC 1 cut(s) 574
PdiI GCCGGC 1 cut(s) 217
PdmI GAANNNNTTC 4 cut(s) 183, 1728, 1910, 2373
PfeI GAWTC 6 cut(s) 524, 764, 1292, 1587, 2015, 2215
PflFI GACNNNGTC 1 cut(s) 1394
PflMI CCANNNNNTGG 2 cut(s) 341, 414
PinAI ACCGGT 1 cut(s) 374
PkrI GCNGC 4 cut(s) 38, 1579, 1705, 2253
PleI GAGTC 2 cut(s) 1403, 2324
PpsI GAGTC 2 cut(s) 1403, 2324
Ppu21I YACGTR 1 cut(s) 1420
PscI ACATGT 1 cut(s) 1284
PshBI ATTAAT 1 cut(s) 108
PsiI TTATAA 1 cut(s) 1248
Psp124BI GAGCTC 1 cut(s) 1614
Psp6I CCWGG 3 cut(s) 474, 563, 1012
PspEI GGTNACC 1 cut(s) 377
PspFI CCCAGC 1 cut(s) 714
PspGI CCWGG 3 cut(s) 474, 563, 1012
PspN4I GGNNCC 5 cut(s) 930, 1304, 1362, 1568, 2110
PspPI GGNCC 5 cut(s) 417, 693, 729, 1044, 1870
PstI CTGCAG 1 cut(s) 38
PsuI RGATCY 1 cut(s) 928
PsyI GACNNNGTC 1 cut(s) 1394
RruI TCGCGA 2 cut(s) 327, 882
RsaI GTAC 6 cut(s) 1220, 1304, 1387, 1568, 1673, 1850
RsaNI GTAC 6 cut(s) 1219, 1303, 1386, 1567, 1672, 1849
RseI CAYNNNNRTG 1 cut(s) 1986
SacI GAGCTC 1 cut(s) 1614
SapI GCTCTTC 1 cut(s) 632
SaqAI TTAA 9 cut(s) 108, 389, 452, 1520, 1710, 1719, 1992, 2064, 2079
SatI GCNGC 4 cut(s) 37, 1578, 1704, 2252
Sau3AI GATC 7 cut(s) 496, 928, 1069, 1402, 1488, 2262, 2322
Sau96I GGNCC 5 cut(s) 417, 693, 729, 1044, 1870
SchI GAGTC 2 cut(s) 1404, 2324
ScrFI CCNGG 3 cut(s) 476, 565, 1014
SduI GDGCHC 4 cut(s) 1284, 1614, 1860, 1931
SexAI ACCWGGT 1 cut(s) 474
SfaNI GCATC 3 cut(s) 385, 2224, 2436
SfcI CTRYAG 2 cut(s) 34, 2309
Sfr274I CTCGAG 1 cut(s) 671
SfuI TTCGAA 1 cut(s) 1886
SinI GGWCC 2 cut(s) 729, 1044
SlaI CTCGAG 1 cut(s) 671
SmiMI CAYNNNNRTG 1 cut(s) 1986
SmlI CTYRAG 5 cut(s) 671, 1296, 1613, 2078, 2086
SmoI CTYRAG 5 cut(s) 671, 1296, 1613, 2078, 2086
SphI GCATGC 1 cut(s) 1768
SseBI AGGCCT 1 cut(s) 1941
SsiI CCGC 4 cut(s) 213, 289, 548, 1706
SspMI CTAG 4 cut(s) 825, 1098, 1751, 2295
SstI GAGCTC 1 cut(s) 1614
StuI AGGCCT 1 cut(s) 1941
StyD4I CCNGG 3 cut(s) 474, 563, 1012
TaiI ACGT 1 cut(s) 1422
TaqI TCGA 8 cut(s) 168, 672, 762, 868, 1068, 1340, 1886, 1914
TaqII GACCGA 1 cut(s) 548
TatI WGTACW 4 cut(s) 1218, 1385, 1671, 1848
TfiI GAWTC 6 cut(s) 524, 764, 1292, 1587, 2015, 2215
Tru1I TTAA 9 cut(s) 108, 389, 452, 1520, 1710, 1719, 1992, 2064, 2079
Tru9I TTAA 9 cut(s) 108, 389, 452, 1520, 1710, 1719, 1992, 2064, 2079
TscAI CASTG 3 cut(s) 1449, 1936, 2399
TseFI GTSAC 1 cut(s) 2203
TseI GCWGC 4 cut(s) 36, 1577, 1703, 2251
Tsp45I GTSAC 1 cut(s) 2203
TspDTI ATGAA 5 cut(s) 231, 264, 900, 932, 1737
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 3 cut(s) 1449, 1936, 2399
Tth111I GACNNNGTC 1 cut(s) 1394
Van91I CCANNNNNTGG 2 cut(s) 341, 414
Vha464I CTTAAG 1 cut(s) 2078
VpaK11BI GGWCC 2 cut(s) 729, 1044
VspI ATTAAT 1 cut(s) 108
XagI CCTNNNNNAGG 1 cut(s) 562
XapI RAATTY 2 cut(s) 17, 1876
XceI RCATGY 2 cut(s) 1288, 1768
XhoI CTCGAG 1 cut(s) 671
XmiI GTMKAC 2 cut(s) 655, 687
XmnI GAANNNNTTC 4 cut(s) 183, 1728, 1910, 2373
XspI CTAG 4 cut(s) 825, 1098, 1751, 2295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.