Rroxscaffold_7G00160040

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000166
Physical Location & Seq
Reverse (-)
3087147 .. 3089564
2418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00160040.1

Sequence Viewer

Length: 2418 bp
ATGGCTGCTCTGTTTCACATTCTTCTTCTTTTTCTTGCAATTTATTTCCAAATCTCGTCTTCAACGTCCGACACTCCAAATAAAGGCTCATCCCTATCTGTAGAGAAACCATACGATGTTTTAACTTCACCGGATGGAGTTTTCACCGCCGGGTTTCACCAAGTCGGCAACAATTCATTTTGCTTTGCTATTTGGTTCAGTGAGCCATTTGGCCACTACGAAAACAGAACCATAGTCTGGATGGCCAACCGTGACCAACCAGTCAATGGCAAACACTCAAAGCTCTCCCTCCTCAAAACTGGTGATCTCATCTTAACAGACGCTGGTCAATCCATTGTTTGGTCGACAGCCACCACTTCAGTCTCACAGGCGAACTTGAGCCTCCACAATTCCGGCAATCTTGTTTTGCTAAACTCGGAGCATGTCATTCTATGGCAGAGCTTTGATCACCCTACTGATACTCTTCTTCCAGACCAACCACTCACCGGAAGCACAATCCTTGTCTCCATGAGAAGCCCGAGCAACTACTCCTCTGGCTTCTACAAGCTCTTCTTTGACAATGACAACCTTCTCCGGCTACTCTTCGACGGTCTTGAGATTTCAAGTGTGTATTGGTTTGAGCCATGGCAAACAGGCCGAACAGCCAGAAGGTCCAAAGACAACAACAGTAGAGTTGCCGTGATGGATTCCTTAGGCAAGTTTACTTCATCAGACAAATATACTTTGATCGCTTCCGATTATGGTGCAGCTTCGCAAAGAAGACTGGCGGTTGATTGTGATGGAAATGTTCGGTTGCACAGCCGGGCCAAACCCGGAGACAGATGGGTTGTGACAGGGCAGATGGTGGAAAATGCTTGTATGATTCACGGGGTTTGTGGTCCTAATAGTGTGTGTGACTATGAGCCTAGTACTGGAAGAAAATGTTCTTGCATTCCTGGTTACAAAATGGCAAACTATACTGATTGGTATTATGGTTGTGAACCTGAGTTCAATTACACTTGCGGCAGAGGTGAGTCCAGTTTCTTCAAGCTTTCGAGGGTCGACTTTTACGGGTATGATTACGGATACTTCCCCAACTACACATTCATGCAGTGTGAGGATCTCTGTTTGCAGCTGTGTAACTGCAAGGGTTTCCAATACTCTCCCCGCAGTAAATACTCTCCAAACTCCCGCAGTGGAATATATGGCTGTTATCCGAAAACGGTGTTGCTCAATGGATACAGGTCTCCAAGCTCTTCTAAAGACATATATTTGAGAGTGCCAAAGATCCATATGTCATCTTATGGATTGCCACAAGAAGAGAATAGGTTGCGTTGCTTAGATAAGGTGGTTCAGCTAGATAGGAGCTATGAGAAGAGCCATGTAACTGGTCTAGAGAAATTTTTGCTGTGGTTTGCCTGTGGAGTTGGAGGGTTTGAGATCATTTGTATACTTTTGGTTTTGGGTTTAATAACTCAAAATCGGAGAGATTCCAATGAGGATAAGCACGGCTACCTTCTTGCTGCAACTGGATTCAAAAGGTTTAGCTATGCTGAGCTCAAGAAGGCAACACGGGATTTTAGTCAAGAAATTGGAAGAGGAGCTGGAGGTGTTGTTTACAAAGCTGTATTGGCTGATCTTCGAGTTGCAGCGATTAAGAGGCTTAATGAAACTAACCAAGGAGAAGGTGAGTTTTCAGCAGAAGTCAACACTATTGGGAGGCTGAACCATATGCATTTGATTGAGATGTGGGGATATTGCTCGGAGGGAAAGCACAGGCTTCTTGTTTATGAGTACATGGAGCATGGTTCCTTGGCACAAAAGTTAGCTTCCAATGTACTTGATTGGGAAAAGAGGTTTGAGATTGCTCTAGGCATTGCAAAGGGTCTTGCTTATTTGCATGAAGAATGTTTGGAGTGGGTTTTACATTGTGATGTTAAGCCTCAAAACATACTCTTGGACTCCAATTATCAACCAAAGGTTGCAGATTTTGGCCTATCCAAGCTACTTAACAGGGATGACCTTAAGAACTGGAGCTTTTCGAGGATACGAGGAACTAGAGGTTACATCGCTCCGGAGTGGGTTTACAATTTGCCTGTCACATCCAAAGTGGATGTGTACAGCTATGGGGTTGTGGTGTTGGAGATGGTGACTGGAAAGAACCCGATCAAGCCGGATGTGGATGCCATTGATGGCGAGCAGAGAAGGCTGATCGTGTGGGTGAGGGAGAAATTACATGATGGAACTTCTGCTAGTGAAATTGAAGCTCGGATAGGAGACGTCATAGACCCTTCGTTTGAAGGTAAATATGATGTAAAAAAGATGGGGATTCTGTTGGAAGTGGCTTCACAATGCGTAGAGGAAGACAGAGACGCGAGACCAACTATGAGCCAAGTCGTTGAGATGCTTGTGTTGCTTGACAAAGACCAAGAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

805

Amino Acids

90.89

Weight (kDa)

6.23

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 77 - 161 1.1e-24 D-mannose binding lectin
S_locus_glycop PF00954 248 - 316 1.7e-07 S-locus glycoprotein domain
PK_Tyr_Ser-Thr PF07714 520 - 796 2.3e-39 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 521 - 795 1.5e-50 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AatII GACGTC 1 cut(s) 2262
AccB7I CCANNNNNTGG 3 cut(s) 237, 266, 339
AccI GTMKAC 3 cut(s) 344, 1041, 1429
AccII CGCG 1 cut(s) 2354
AccIII TCCGGA 1 cut(s) 2053
AciI CCGC 5 cut(s) 147, 767, 1002, 1147, 1171
AclWI GGATC 2 cut(s) 1107, 1261
AcoI YGGCCR 2 cut(s) 211, 243
AcsI RAATTY 1 cut(s) 1379
AcuI CTGAAG 1 cut(s) 342
AcyI GRCGYC 1 cut(s) 2259
AfaI GTAC 4 cut(s) 910, 1775, 1818, 2099
AfiI CCNNNNNNNGG 6 cut(s) 83, 237, 266, 339, 485, 911
AflII CTTAAG 1 cut(s) 2003
AgsI TTSAA 7 cut(s) 63, 603, 991, 1027, 1516, 2243, 2279
AjnI CCWGG 1 cut(s) 934
AjuI GAANNNNNNNTTGG 2 cut(s) 1067, 1099
Alw21I GWGCWC 1 cut(s) 1539
Alw26I GTCTC 7 cut(s) 367, 508, 810, 1230, 2250, 2343, 2350
AlwI GGATC 2 cut(s) 1107, 1261
AlwNI CAGNNNCTG 1 cut(s) 323
Ama87I CYCGRG 1 cut(s) 517
Aor13HI TCCGGA 1 cut(s) 2053
AoxI GGCC 5 cut(s) 211, 243, 634, 804, 1972
ApeKI GCWGC 5 cut(s) 5, 746, 1111, 1502, 1628
ApoI RAATTY 1 cut(s) 1379
ArsI GACNNNNNNTTYG 2 cut(s) 2258, 2290
Asp700I GAANNNNTTC 1 cut(s) 922
AspS9I GGNCC 3 cut(s) 651, 804, 878
AsuC2I CCSGG 3 cut(s) 151, 803, 813
AvaI CYCGRG 1 cut(s) 517
AvaII GGWCC 2 cut(s) 651, 878
AxyI CCTNAGG 1 cut(s) 691
BalI TGGCCA 2 cut(s) 213, 245
BanII GRGCYC 1 cut(s) 1539
BbsI GAAGAC 3 cut(s) 51, 766, 2349
Bbv12I GWGCWC 1 cut(s) 1539
BbvI GCAGC 4 cut(s) 758, 1123, 1489, 1640
BceAI ACGGC 2 cut(s) 662, 1504
BcgI CGANNNNNNTGC 2 cut(s) 725, 759
BciT130I CCWGG 1 cut(s) 936
BciVI GTATCC 3 cut(s) 1058, 1211, 2019
BclI TGATCA 1 cut(s) 445
BcnI CCSGG 3 cut(s) 151, 803, 813
BcoDI GTCTC 7 cut(s) 367, 508, 810, 1230, 2250, 2343, 2350
BfaI CTAG 6 cut(s) 906, 1337, 1373, 1850, 2037, 2232
BfmI CTRYAG 1 cut(s) 99
BfrI CTTAAG 1 cut(s) 2003
BfuI GTATCC 3 cut(s) 1058, 1211, 2019
BisI GCNGC 6 cut(s) 6, 747, 1003, 1112, 1503, 1629
BlpI GCTNAGC 1 cut(s) 1533
BlsI GCNGC 6 cut(s) 7, 748, 1004, 1113, 1504, 1630
BmcAI AGTACT 1 cut(s) 910
Bme1390I CCNGG 4 cut(s) 151, 803, 813, 936
Bme18I GGWCC 2 cut(s) 651, 878
BmeT110I CYCGRG 1 cut(s) 517
BmgT120I GGNCC 3 cut(s) 651, 804, 878
BmiI GGNNCC 1 cut(s) 1789
BmrFI CCNGG 4 cut(s) 151, 803, 813, 936
BmsI GCATC 2 cut(s) 2152, 2373
BoxI GACNNNNGTC 1 cut(s) 324
BpiI GAAGAC 3 cut(s) 51, 766, 2349
BpmI CTGGAG 2 cut(s) 1605, 2032
Bpu1102I GCTNAGC 1 cut(s) 1533
BpuEI CTTGAG 3 cut(s) 397, 614, 1523
BpuMI CCSGG 3 cut(s) 151, 803, 813
BsaHI GRCGYC 1 cut(s) 2259
BsaI GGTCTC 2 cut(s) 1230, 2350
BsaJI CCNNGG 3 cut(s) 623, 1657, 1791
BsaWI WCCGGW 3 cut(s) 130, 485, 2053
BsaXI ACNNNNNCTCC 2 cut(s) 1578, 1608
Bsc4I CCNNNNNNNGG 6 cut(s) 83, 237, 266, 339, 485, 911
Bse1I ACTGG 9 cut(s) 260, 304, 768, 916, 1017, 1372, 1513, 2015, 2137
Bse21I CCTNAGG 1 cut(s) 691
Bse3DI GCAATG 1 cut(s) 1854
BseAI TCCGGA 1 cut(s) 2053
BseBI CCWGG 1 cut(s) 936
BseDI CCNNGG 3 cut(s) 623, 1657, 1791
BseGI GGATG 8 cut(s) 89, 139, 246, 2002, 2081, 2098, 2161, 2167
BseLI CCNNNNNNNGG 6 cut(s) 83, 237, 266, 339, 485, 911
BseMI GCAATG 1 cut(s) 1854
BseMII CTCAG 2 cut(s) 975, 1524
BseNI ACTGG 9 cut(s) 260, 304, 768, 916, 1017, 1372, 1513, 2015, 2137
BseRI GAGGAG 3 cut(s) 281, 520, 1593
BseXI GCAGC 4 cut(s) 758, 1123, 1489, 1640
BsgI GTGCAG 1 cut(s) 765
Bsh1236I CGCG 1 cut(s) 2354
BshFI GGCC 5 cut(s) 213, 245, 636, 806, 1974
BsiHKAI GWGCWC 1 cut(s) 1539
BsiHKCI CYCGRG 1 cut(s) 517
BsiSI CCGG 9 cut(s) 131, 150, 393, 486, 574, 802, 813, 2054, 2153
BslI CCNNNNNNNGG 6 cut(s) 83, 237, 266, 339, 485, 911
BsmAI GTCTC 7 cut(s) 367, 508, 810, 1230, 2250, 2343, 2350
BsmBI CGTCTC 2 cut(s) 2250, 2343
BsmI GAATGC 1 cut(s) 930
BsnI GGCC 5 cut(s) 213, 245, 636, 806, 1974
Bso31I GGTCTC 2 cut(s) 1230, 2350
BsoBI CYCGRG 1 cut(s) 517
Bsp1286I GDGCHC 1 cut(s) 1539
Bsp13I TCCGGA 1 cut(s) 2053
Bsp1407I TGTACA 1 cut(s) 2097
Bsp143I GATC 9 cut(s) 304, 445, 726, 1099, 1266, 1419, 1615, 2145, 2190
Bsp1720I GCTNAGC 1 cut(s) 1533
Bsp19I CCATGG 1 cut(s) 623
BspACI CCGC 5 cut(s) 147, 767, 1002, 1147, 1171
BspANI GGCC 5 cut(s) 213, 245, 636, 806, 1974
BspCNI CTCAG 2 cut(s) 976, 1525
BspEI TCCGGA 1 cut(s) 2053
BspFNI CGCG 1 cut(s) 2354
BspLI GGNNCC 1 cut(s) 1789
BspPI GGATC 2 cut(s) 1107, 1261
BspQI GCTCTTC 3 cut(s) 554, 1240, 1349
BspTI CTTAAG 1 cut(s) 2003
BspTNI GGTCTC 2 cut(s) 1230, 2350
BsrDI GCAATG 1 cut(s) 1854
BsrGI TGTACA 1 cut(s) 2097
BsrI ACTGG 9 cut(s) 260, 304, 768, 916, 1017, 1372, 1513, 2015, 2137
BssECI CCNNGG 3 cut(s) 623, 1657, 1791
BssMI GATC 9 cut(s) 304, 445, 726, 1099, 1266, 1419, 1615, 2145, 2190
BssNAI GTATAC 1 cut(s) 1430
BssNI GRCGYC 1 cut(s) 2259
BssT1I CCWWGG 3 cut(s) 623, 1657, 1791
Bst1107I GTATAC 1 cut(s) 1430
Bst2UI CCWGG 1 cut(s) 936
Bst4CI ACNGT 4 cut(s) 251, 590, 668, 1204
Bst6I CTCTTC 7 cut(s) 468, 554, 587, 1240, 1293, 1349, 1570
BstACI GRCGYC 1 cut(s) 2259
BstAFI CTTAAG 1 cut(s) 2003
BstAUI TGTACA 1 cut(s) 2097
BstC8I GCNNGC 1 cut(s) 2177
BstDEI CTNAG 4 cut(s) 691, 984, 1318, 1533
BstDSI CCRYGG 1 cut(s) 623
BstF5I GGATG 8 cut(s) 89, 139, 246, 2002, 2081, 2098, 2161, 2167
BstFNI CGCG 1 cut(s) 2354
BstKTI GATC 9 cut(s) 307, 448, 729, 1102, 1269, 1422, 1618, 2148, 2193
BstMAI GTCTC 7 cut(s) 367, 508, 810, 1230, 2250, 2343, 2350
BstMBI GATC 9 cut(s) 304, 445, 726, 1099, 1266, 1419, 1615, 2145, 2190
BstMWI GCNNNNNNNGC 3 cut(s) 1610, 2185, 2392
BstNI CCWGG 1 cut(s) 936
BstNSI RCATGY 1 cut(s) 425
BstPAI GACNNNNGTC 1 cut(s) 324
BstSCI CCNGG 4 cut(s) 149, 801, 811, 934
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 2354
BstV1I GCAGC 4 cut(s) 758, 1123, 1489, 1640
BstV2I GAAGAC 3 cut(s) 51, 766, 2349
BstX2I RGATCY 2 cut(s) 1099, 1266
BstXI CCANNNNNNTGG 1 cut(s) 1367
BstYI RGATCY 2 cut(s) 1099, 1266
BstZ17I GTATAC 1 cut(s) 1430
Bsu36I CCTNAGG 1 cut(s) 691
BsuI GTATCC 3 cut(s) 1058, 1211, 2019
BsuRI GGCC 5 cut(s) 213, 245, 636, 806, 1974
BtgI CCRYGG 1 cut(s) 623
BtgZI GCGATG 1 cut(s) 2032
BtsCI GGATG 8 cut(s) 89, 139, 246, 2002, 2081, 2098, 2161, 2167
BtsI GCAGTG 2 cut(s) 1097, 1180
BtsIMutI CAGTG 3 cut(s) 205, 1097, 1180
Cac8I GCNNGC 1 cut(s) 2177
CaiI CAGNNNCTG 1 cut(s) 323
Cfr13I GGNCC 3 cut(s) 651, 804, 878
CseI GACGC 2 cut(s) 329, 2360
Csp6I GTAC 4 cut(s) 909, 1774, 1817, 2098
CviAII CATG 9 cut(s) 422, 508, 624, 1087, 1361, 1777, 1784, 1880, 2216
CviQI GTAC 4 cut(s) 909, 1774, 1817, 2098
DdeI CTNAG 4 cut(s) 691, 984, 1318, 1533
DpnI GATC 9 cut(s) 306, 447, 728, 1101, 1268, 1421, 1617, 2147, 2192
DpnII GATC 9 cut(s) 304, 445, 726, 1099, 1266, 1419, 1615, 2145, 2190
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 2 cut(s) 211, 243
Eam1104I CTCTTC 7 cut(s) 468, 554, 587, 1240, 1293, 1349, 1570
EarI CTCTTC 7 cut(s) 468, 554, 587, 1240, 1293, 1349, 1570
Ecl136II GAGCTC 1 cut(s) 1537
Eco130I CCWWGG 3 cut(s) 623, 1657, 1791
Eco24I GRGCYC 1 cut(s) 1539
Eco31I GGTCTC 2 cut(s) 1230, 2350
Eco47I GGWCC 2 cut(s) 651, 878
Eco53kI GAGCTC 1 cut(s) 1537
Eco57I CTGAAG 1 cut(s) 342
Eco81I CCTNAGG 1 cut(s) 691
Eco88I CYCGRG 1 cut(s) 517
EcoICRI GAGCTC 1 cut(s) 1537
EcoRII CCWGG 1 cut(s) 934
EcoT14I CCWWGG 3 cut(s) 623, 1657, 1791
EcoT22I ATGCAT 1 cut(s) 1716
EcoT38I GRGCYC 1 cut(s) 1539
ErhI CCWWGG 3 cut(s) 623, 1657, 1791
Esp3I CGTCTC 2 cut(s) 2250, 2343
FaeI CATG 9 cut(s) 425, 511, 627, 1090, 1364, 1780, 1787, 1883, 2219
FalI AAGNNNNNCTT 2 cut(s) 536, 568
FatI CATG 9 cut(s) 421, 507, 623, 1086, 1360, 1776, 1783, 1879, 2215
FauI CCCGC 2 cut(s) 1154, 1178
FauNDI CATATG 2 cut(s) 1272, 1710
FbaI TGATCA 1 cut(s) 445
FblI GTMKAC 3 cut(s) 344, 1041, 1429
Fnu4HI GCNGC 6 cut(s) 6, 747, 1003, 1112, 1503, 1629
FokI GGATG 8 cut(s) 76, 146, 253, 2009, 2068, 2105, 2168, 2174
FriOI GRGCYC 1 cut(s) 1539
Fsp4HI GCNGC 6 cut(s) 6, 747, 1003, 1112, 1503, 1629
FspBI CTAG 6 cut(s) 906, 1337, 1373, 1850, 2037, 2232
GluI GCNGC 6 cut(s) 6, 747, 1003, 1112, 1503, 1629
GsuI CTGGAG 2 cut(s) 1605, 2032
HaeIII GGCC 5 cut(s) 213, 245, 636, 806, 1974
HapII CCGG 9 cut(s) 131, 150, 393, 486, 574, 802, 813, 2054, 2153
HgaI GACGC 2 cut(s) 329, 2360
Hin1I GRCGYC 1 cut(s) 2259
Hin1II CATG 9 cut(s) 425, 511, 627, 1090, 1364, 1780, 1787, 1883, 2219
HincII GTYRAC 3 cut(s) 345, 1042, 1687
HindII GTYRAC 3 cut(s) 345, 1042, 1687
HindIII AAGCTT 1 cut(s) 1028
HinfI GANTC 7 cut(s) 686, 862, 1013, 1469, 1512, 1940, 2308
HpaII CCGG 9 cut(s) 131, 150, 393, 486, 574, 802, 813, 2054, 2153
Hpy166II GTNNAC 9 cut(s) 345, 702, 980, 1042, 1430, 1597, 1687, 2065, 2098
Hpy188I TCNGA 8 cut(s) 70, 418, 712, 736, 1197, 1464, 1744, 2250
Hpy188III TCNNGA 7 cut(s) 238, 470, 593, 1373, 1540, 1565, 2054
Hpy8I GTNNAC 9 cut(s) 345, 702, 980, 1042, 1430, 1597, 1687, 2065, 2098
Hpy99I CGWCG 1 cut(s) 590
HpyAV CCTTC 8 cut(s) 578, 642, 1505, 1537, 1658, 2178, 2273, 2280
HpyCH4III ACNGT 4 cut(s) 251, 590, 668, 1204
HpyCH4IV ACGT 2 cut(s) 65, 2259
HpyF10VI GCNNNNNNNGC 3 cut(s) 1610, 2185, 2392
HpyF3I CTNAG 4 cut(s) 691, 984, 1318, 1533
HpySE526I ACGT 2 cut(s) 65, 2259
Hsp92I GRCGYC 1 cut(s) 2259
Hsp92II CATG 9 cut(s) 425, 511, 627, 1090, 1364, 1780, 1787, 1883, 2219
Kpn2I TCCGGA 1 cut(s) 2053
Ksp22I TGATCA 1 cut(s) 445
Kzo9I GATC 9 cut(s) 304, 445, 726, 1099, 1266, 1419, 1615, 2145, 2190
LguI GCTCTTC 3 cut(s) 554, 1240, 1349
LmnI GCTCC 6 cut(s) 418, 1344, 1580, 1780, 2013, 2056
Lsp1109I GCAGC 4 cut(s) 758, 1123, 1489, 1640
LweI GCATC 2 cut(s) 2152, 2373
MaeI CTAG 6 cut(s) 906, 1337, 1373, 1850, 2037, 2232
MaeII ACGT 2 cut(s) 65, 2259
MaeIII GTNAC 9 cut(s) 251, 829, 893, 938, 1118, 1363, 2042, 2077, 2128
MalI GATC 9 cut(s) 306, 447, 728, 1101, 1268, 1421, 1617, 2147, 2192
MboI GATC 9 cut(s) 304, 445, 726, 1099, 1266, 1419, 1615, 2145, 2190
MflI RGATCY 2 cut(s) 1099, 1266
MhlI GDGCHC 1 cut(s) 1539
MlsI TGGCCA 2 cut(s) 213, 245
MluNI TGGCCA 2 cut(s) 213, 245
MlyI GAGTC 2 cut(s) 1022, 1934
MmeI TCCRAC 4 cut(s) 93, 1387, 2100, 2295
Mox20I TGGCCA 2 cut(s) 213, 245
Mph1103I ATGCAT 1 cut(s) 1716
MroI TCCGGA 1 cut(s) 2053
MroXI GAANNNNTTC 1 cut(s) 922
MscI TGGCCA 2 cut(s) 213, 245
MseI TTAA 8 cut(s) 122, 314, 1448, 1635, 1644, 1917, 1989, 2004
MslI CAYNNNNRTG 2 cut(s) 1085, 1911
Msp20I TGGCCA 2 cut(s) 213, 245
MspA1I CMGCKG 1 cut(s) 1114
MspCI CTTAAG 1 cut(s) 2003
MspI CCGG 9 cut(s) 131, 150, 393, 486, 574, 802, 813, 2054, 2153
MspR9I CCNGG 4 cut(s) 151, 803, 813, 936
Mva1269I GAATGC 1 cut(s) 930
MvaI CCWGG 1 cut(s) 936
MvnI CGCG 1 cut(s) 2354
MwoI GCNNNNNNNGC 3 cut(s) 1610, 2185, 2392
NciI CCSGG 3 cut(s) 151, 803, 813
NcoI CCATGG 1 cut(s) 623
NdeI CATATG 2 cut(s) 1272, 1710
NdeII GATC 9 cut(s) 304, 445, 726, 1099, 1266, 1419, 1615, 2145, 2190
NlaIII CATG 9 cut(s) 425, 511, 627, 1090, 1364, 1780, 1787, 1883, 2219
NlaIV GGNNCC 1 cut(s) 1789
NmuCI GTSAC 5 cut(s) 251, 829, 893, 2077, 2128
NsiI ATGCAT 1 cut(s) 1716
NspI RCATGY 1 cut(s) 425
PciSI GCTCTTC 3 cut(s) 554, 1240, 1349
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PctI GAATGC 1 cut(s) 930
PdmI GAANNNNTTC 1 cut(s) 922
PfeI GAWTC 5 cut(s) 686, 862, 1469, 1512, 2308
PflMI CCANNNNNTGG 3 cut(s) 237, 266, 339
PkrI GCNGC 6 cut(s) 7, 748, 1004, 1113, 1504, 1630
PleI GAGTC 2 cut(s) 1021, 1934
PpsI GAGTC 2 cut(s) 1021, 1934
PshAI GACNNNNGTC 1 cut(s) 324
Psp124BI GAGCTC 1 cut(s) 1539
Psp6I CCWGG 1 cut(s) 934
PspGI CCWGG 1 cut(s) 934
PspN4I GGNNCC 1 cut(s) 1789
PspPI GGNCC 3 cut(s) 651, 804, 878
PstNI CAGNNNCTG 1 cut(s) 323
PsuI RGATCY 2 cut(s) 1099, 1266
PvuII CAGCTG 1 cut(s) 1114
RsaI GTAC 4 cut(s) 910, 1775, 1818, 2099
RsaNI GTAC 4 cut(s) 909, 1774, 1817, 2098
RseI CAYNNNNRTG 2 cut(s) 1085, 1911
SacI GAGCTC 1 cut(s) 1539
SalI GTCGAC 2 cut(s) 343, 1040
SapI GCTCTTC 3 cut(s) 554, 1240, 1349
SaqAI TTAA 8 cut(s) 122, 314, 1448, 1635, 1644, 1917, 1989, 2004
SatI GCNGC 6 cut(s) 6, 747, 1003, 1112, 1503, 1629
Sau3AI GATC 9 cut(s) 304, 445, 726, 1099, 1266, 1419, 1615, 2145, 2190
Sau96I GGNCC 3 cut(s) 651, 804, 878
ScaI AGTACT 1 cut(s) 910
SchI GAGTC 2 cut(s) 1022, 1934
ScrFI CCNGG 4 cut(s) 151, 803, 813, 936
SduI GDGCHC 1 cut(s) 1539
SfaNI GCATC 2 cut(s) 2152, 2373
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 2 cut(s) 651, 878
SmiMI CAYNNNNRTG 2 cut(s) 1085, 1911
SmlI CTYRAG 4 cut(s) 376, 593, 1538, 2003
SmoI CTYRAG 4 cut(s) 376, 593, 1538, 2003
SsiI CCGC 5 cut(s) 147, 767, 1002, 1147, 1171
SspMI CTAG 6 cut(s) 906, 1337, 1373, 1850, 2037, 2232
SstI GAGCTC 1 cut(s) 1539
StyD4I CCNGG 4 cut(s) 149, 801, 811, 934
StyI CCWWGG 3 cut(s) 623, 1657, 1791
TaaI ACNGT 4 cut(s) 251, 590, 668, 1204
TaiI ACGT 2 cut(s) 68, 2262
TaqI TCGA 6 cut(s) 344, 585, 1034, 1041, 1621, 2021
TatI WGTACW 4 cut(s) 908, 1773, 1816, 2097
TauI GCSGC 1 cut(s) 1005
TfiI GAWTC 5 cut(s) 686, 862, 1469, 1512, 2308
Tru1I TTAA 8 cut(s) 122, 314, 1448, 1635, 1644, 1917, 1989, 2004
Tru9I TTAA 8 cut(s) 122, 314, 1448, 1635, 1644, 1917, 1989, 2004
TscAI CASTG 3 cut(s) 205, 1097, 1180
TseFI GTSAC 5 cut(s) 251, 829, 893, 2077, 2128
TseI GCWGC 5 cut(s) 5, 746, 1111, 1502, 1628
Tsp45I GTSAC 5 cut(s) 251, 829, 893, 2077, 2128
TspDTI ATGAA 5 cut(s) 165, 696, 1075, 1662, 1896
TspGWI ACGGA 1 cut(s) 1077
TspRI CASTG 3 cut(s) 205, 1097, 1180
Van91I CCANNNNNTGG 3 cut(s) 237, 266, 339
Vha464I CTTAAG 1 cut(s) 2003
VpaK11BI GGWCC 2 cut(s) 651, 878
XapI RAATTY 1 cut(s) 1379
XbaI TCTAGA 1 cut(s) 1372
XceI RCATGY 1 cut(s) 425
XcmI CCANNNNNNNNNTGG 2 cut(s) 238, 263
XmiI GTMKAC 3 cut(s) 344, 1041, 1429
XmnI GAANNNNTTC 1 cut(s) 922
XspI CTAG 6 cut(s) 906, 1337, 1373, 1850, 2037, 2232
ZraI GACGTC 1 cut(s) 2260
ZrmI AGTACT 1 cut(s) 910
Zsp2I ATGCAT 1 cut(s) 1716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.