Rmu_co8160990.1_g000001

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8160990.1
Physical Location & Seq
Reverse (-)
2 .. 571
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8160990.1_g000001.1.cds

Sequence Viewer

Length: 570 bp
ctggagaatggatccttggatgaactcttgttttctgatgttgaattaggattggagcagcgatacaatattgcattaggcactgcaaagggtttgtcatatctacatgaggagtgtctggaatgggtactccactgtgatgtaaagcctcaaaatatactgttaggtgaccatcttgaacctaaggtggcagattttggcatgtcaaagttattcaaagtcaacattgatgatgcaggcattggattttccagagttcgaggcaccagaggttatatggctccagagtggatggtgaaccttaaaattgatgcaaaggcagatgtctacagctatgggattgttttgttggagctactgagtggaaagagtgcatctattctactttcagcttttgcacaagagtacactgagcacaaccaactggtacaatgtgtgactgaaaagatcagagtcgaagggcttaaggaagtgattgatcctagactctatcataatttcaacaagaagaagctcgaaagattgatgaaggttgctcttctgtgtgtgcaagaagaccgcagtgcaaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

190

Amino Acids

21.51

Weight (kDa)

5.59

Isoelectric Point (pI)

29.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 327
AciI CCGC 1 cut(s) 559
AclWI GGATC 3 cut(s) 6, 19, 473
AfaI GTAC 3 cut(s) 129, 407, 429
AflII CTTAAG 1 cut(s) 464
AgsI TTSAA 4 cut(s) 44, 179, 217, 502
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AluBI AGCT 4 cut(s) 333, 355, 392, 514
AluI AGCT 4 cut(s) 333, 355, 392, 514
Alw21I GWGCWC 1 cut(s) 417
AlwI GGATC 3 cut(s) 6, 19, 473
ApeKI GCWGC 1 cut(s) 58
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AsuHPI GGTGA 2 cut(s) 179, 307
AxyI CCTNAGG 1 cut(s) 183
BamHI GGATCC 1 cut(s) 11
BanI GGYRCC 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 561
Bbv12I GWGCWC 1 cut(s) 417
BbvI GCAGC 1 cut(s) 70
BccI CCATC 2 cut(s) 180, 286
BfaI CTAG 1 cut(s) 483
BfmI CTRYAG 1 cut(s) 328
BfrI CTTAAG 1 cut(s) 464
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
BmiI GGNNCC 3 cut(s) 13, 265, 282
BmsI GCATC 3 cut(s) 223, 301, 383
BpiI GAAGAC 1 cut(s) 561
BpmI CTGGAG 2 cut(s) 23, 267
BsaJI CCNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 429
Bse21I CCTNAGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 2 cut(s) 25, 297
BseMII CTCAG 2 cut(s) 350, 402
BseNI ACTGG 1 cut(s) 429
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 417
Bsp1286I GDGCHC 1 cut(s) 417
Bsp143I GATC 3 cut(s) 11, 447, 478
BspACI CCGC 1 cut(s) 559
BspCNI CTCAG 2 cut(s) 351, 403
BspLI GGNNCC 3 cut(s) 13, 265, 282
BspPI GGATC 3 cut(s) 6, 19, 473
BspQI GCTCTTC 1 cut(s) 543
BspT107I GGYRCC 1 cut(s) 263
BspTI CTTAAG 1 cut(s) 464
BsrI ACTGG 1 cut(s) 429
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 3 cut(s) 11, 447, 478
BssT1I CCWWGG 1 cut(s) 15
Bst4CI ACNGT 2 cut(s) 137, 162
Bst6I CTCTTC 1 cut(s) 543
BstAFI CTTAAG 1 cut(s) 464
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 3 cut(s) 183, 359, 411
BstEII GGTNACC 1 cut(s) 167
BstF5I GGATG 2 cut(s) 25, 297
BstKTI GATC 3 cut(s) 14, 450, 481
BstMBI GATC 3 cut(s) 11, 447, 478
BstNSI RCATGY 1 cut(s) 205
BstPI GGTNACC 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 561
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
Bsu36I CCTNAGG 1 cut(s) 183
BtsCI GGATG 2 cut(s) 25, 297
BtsI GCAGTG 2 cut(s) 81, 568
BtsIMutI CAGTG 4 cut(s) 81, 133, 408, 568
Cac8I GCNNGC 1 cut(s) 238
Csp6I GTAC 3 cut(s) 128, 406, 428
CviAII CATG 2 cut(s) 107, 202
CviJI RGCY 7 cut(s) 148, 281, 333, 355, 392, 463, 514
CviKI_1 RGCY 7 cut(s) 148, 281, 333, 355, 392, 463, 514
CviQI GTAC 3 cut(s) 128, 406, 428
DdeI CTNAG 3 cut(s) 183, 359, 411
DpnI GATC 3 cut(s) 13, 449, 480
DpnII GATC 3 cut(s) 11, 447, 478
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
Eco130I CCWWGG 1 cut(s) 15
Eco81I CCTNAGG 1 cut(s) 183
Eco91I GGTNACC 1 cut(s) 167
EcoO65I GGTNACC 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 2 cut(s) 110, 205
FaiI YATR 8 cut(s) 100, 108, 158, 203, 276, 278, 336, 495
FatI CATG 2 cut(s) 106, 201
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 2 cut(s) 32, 304
Fsp4HI GCNGC 1 cut(s) 59
FspBI CTAG 1 cut(s) 483
GluI GCNGC 1 cut(s) 59
GsuI CTGGAG 2 cut(s) 23, 267
Hin1II CATG 2 cut(s) 110, 205
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 2 cut(s) 453, 486
HphI GGTGA 2 cut(s) 179, 307
Hpy166II GTNNAC 4 cut(s) 223, 298, 328, 408
Hpy188I TCNGA 2 cut(s) 37, 452
Hpy188III TCNNGA 4 cut(s) 119, 176, 252, 284
Hpy8I GTNNAC 4 cut(s) 223, 298, 328, 408
HpyAV CCTTC 2 cut(s) 452, 523
HpyCH4III ACNGT 2 cut(s) 137, 162
HpyCH4V TGCA 8 cut(s) 74, 86, 236, 314, 374, 398, 550, 566
HpyF3I CTNAG 3 cut(s) 183, 359, 411
Hsp92II CATG 2 cut(s) 110, 205
Kzo9I GATC 3 cut(s) 11, 447, 478
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 3 cut(s) 55, 286, 352
LpnPI CCDG 6 cut(s) 104, 222, 265, 280, 297, 410
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 3 cut(s) 223, 301, 383
MaeI CTAG 1 cut(s) 483
MaeIII GTNAC 2 cut(s) 167, 436
MalI GATC 3 cut(s) 13, 449, 480
MboI GATC 3 cut(s) 11, 447, 478
MboII GAAGA 3 cut(s) 520, 530, 566
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 417
MluCI AATT 3 cut(s) 44, 306, 496
MlyI GAGTC 2 cut(s) 462, 480
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 4 cut(s) 103, 159, 254, 263
MseI TTAA 2 cut(s) 303, 465
MslI CAYNNNNRTG 1 cut(s) 138
MspCI CTTAAG 1 cut(s) 464
NdeII GATC 3 cut(s) 11, 447, 478
NlaIII CATG 2 cut(s) 110, 205
NlaIV GGNNCC 3 cut(s) 13, 265, 282
NmuCI GTSAC 2 cut(s) 167, 436
NspI RCATGY 1 cut(s) 205
PciSI GCTCTTC 1 cut(s) 543
PkrI GCNGC 1 cut(s) 60
PleI GAGTC 2 cut(s) 461, 480
PpsI GAGTC 2 cut(s) 461, 480
PspEI GGTNACC 1 cut(s) 167
PspN4I GGNNCC 3 cut(s) 13, 265, 282
PsuI RGATCY 1 cut(s) 11
RsaI GTAC 3 cut(s) 129, 407, 429
RsaNI GTAC 3 cut(s) 128, 406, 428
RseI CAYNNNNRTG 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 2 cut(s) 303, 465
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 3 cut(s) 11, 447, 478
SchI GAGTC 2 cut(s) 462, 480
SduI GDGCHC 1 cut(s) 417
SfaNI GCATC 3 cut(s) 223, 301, 383
SfcI CTRYAG 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 3 cut(s) 44, 306, 496
SsiI CCGC 1 cut(s) 559
SspI AATATT 1 cut(s) 70
SspMI CTAG 1 cut(s) 483
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 2 cut(s) 137, 162
TaqI TCGA 3 cut(s) 259, 456, 516
TasI AATT 3 cut(s) 44, 306, 496
TatI WGTACW 1 cut(s) 405
Tru1I TTAA 2 cut(s) 303, 465
Tru9I TTAA 2 cut(s) 303, 465
TscAI CASTG 4 cut(s) 88, 140, 415, 568
TseFI GTSAC 2 cut(s) 167, 436
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 2 cut(s) 167, 436
TspDTI ATGAA 2 cut(s) 36, 542
TspRI CASTG 4 cut(s) 88, 140, 415, 568
Vha464I CTTAAG 1 cut(s) 464
XceI RCATGY 1 cut(s) 205
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 327
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.