Rh6AG477800

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000166
Physical Location & Seq
Forward (+)
65906732 .. 65909404
2673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG477800.1

Sequence Viewer

Length: 1155 bp
ATGAGCTGGGATAATGCAAGGTCTACTTACAACAGCAGTAGAACAGCCATGCTTGATTCCTTAGGCAGTTTTGCCTCTTCGGACAATCTGACTTTTCTTGCAGCTGATTATGGTGCAAAGTTGCAGAGAAGATTGACTATTGATTTTGATGGAAATGTTCGATTGTATAGCCGAAAAATGCCAGGAGAGAGTTGGGTGGTTTCATGGCAAGCCTTTTCAGACCCTTGTGTGATTCATGGAATTTGTGGAGCTTACAGCCTCTGCAGCTACGATCCCAGTTCTGGGAGGAAATGCTCTTGCCTTCCAGGATATCAGATGGAAAATCATACTGATTGGTCTCTGGGGTGTCAACCGGAGTTTCAATTCTCTTATGTAGAAGGTGAGTCTCGTTTTCTCCAACTTACGCAAGTTGAGTTCTATGGTTACGATTATAATGAGTACCAAAATTATAGCTATGGTGATTGTGAGAAAAGATGCTTGGAACTGGATAACTGCAAGGGCTTTCAGTACACGTTTGATTCTGGTGTTTATAAGTGTAATCCCAAGACGCAGTTGCGAAGTGGGCACAGGTGGAACACTCAAGGTTACTTCTATCTGAGACTGCCCAAGGCTCACCTCTTCTCTAACACAGACATAAAGCCCCCGAAGAACCTTGGTTTTAGTTGCACAGAAAAAGTTGTTGATCTCGAGAGGGAGTATGTTAAAGATCGAGTCAGTAAGCCGGTGAAATTCCTGCTCTGGTTTGCCTATGGAGTTGGGGGAGTTGAAATCATTTGTATCATTTTTGTTTGGGGTTTATTGAGCAGTACATTCTCAAAATCAAATGAAGATATTCACGGCTACCTTCTTACTGCAACCGGGTTCAAAAGATTTAGCTACGCTGAGCTCAAGACTGCAACACGGGGTTTTAGTGATGAAATTGGGAGAGGAGCAGGAGGAGTTGTTTACAAAGGTGTATTGGCTGATCAGCGAGTGGCAGCGATTAAACTGCTCAGTGAAGCTAATCAAGTAGAAGCAGAATTTCTAGCAGAAGCTAGTACTATTGGGAAGGTGAATCATATGAACTTGATAGAGATGTGGGGATATTGCTCAGAGGGAAAGCACAGGGTTCTTGTTTATGGAGCATGGTTCCTTGGCACAAAATTTAGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

384

Amino Acids

43.56

Weight (kDa)

7.01

Isoelectric Point (pI)

31.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 38 - 107 2.5e-09 S-locus glycoprotein domain
PK_Tyr_Ser-Thr PF07714 304 - 373 2.7e-08 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 305 - 373 4.3e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 432, 531
AccI GTMKAC 1 cut(s) 23
AclWI GGATC 1 cut(s) 266
AcsI RAATTY 4 cut(s) 240, 728, 1019, 1142
AfaI GTAC 4 cut(s) 440, 509, 808, 1039
AfiI CCNNNNNNNGG 2 cut(s) 281, 282
AflIII ACRYGT 1 cut(s) 510
AgsI TTSAA 3 cut(s) 362, 767, 865
AjnI CCWGG 2 cut(s) 181, 304
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
Alw21I GWGCWC 1 cut(s) 888
Alw26I GTCTC 3 cut(s) 342, 390, 592
AlwI GGATC 1 cut(s) 266
AlwNI CAGNNNCTG 1 cut(s) 261
Ama87I CYCGRG 1 cut(s) 686
ApeKI GCWGC 3 cut(s) 101, 264, 977
ApoI RAATTY 4 cut(s) 240, 728, 1019, 1142
Asp700I GAANNNNTTC 1 cut(s) 831
AsuC2I CCSGG 1 cut(s) 859
AsuHPI GGTGA 5 cut(s) 392, 470, 605, 736, 1063
AvaI CYCGRG 1 cut(s) 686
AxyI CCTNAGG 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 567
BanII GRGCYC 1 cut(s) 888
Bbv12I GWGCWC 1 cut(s) 888
BbvI GCAGC 3 cut(s) 113, 276, 989
BccI CCATC 2 cut(s) 143, 310
BceAI ACGGC 1 cut(s) 853
BcgI CGANNNNNNTGC 2 cut(s) 970, 1004
BciT130I CCWGG 2 cut(s) 183, 306
BclI TGATCA 1 cut(s) 964
BcnI CCSGG 1 cut(s) 859
BcoDI GTCTC 3 cut(s) 342, 390, 592
BfaI CTAG 2 cut(s) 1025, 1035
BfmI CTRYAG 1 cut(s) 262
BisI GCNGC 3 cut(s) 102, 265, 978
BlpI GCTNAGC 1 cut(s) 882
BlsI GCNGC 3 cut(s) 103, 266, 979
BmcAI AGTACT 1 cut(s) 1039
Bme1390I CCNGG 3 cut(s) 183, 306, 859
BmeT110I CYCGRG 1 cut(s) 686
BmiI GGNNCC 1 cut(s) 1130
BmrFI CCNGG 3 cut(s) 183, 306, 859
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 464
BmuI ACTGGG 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 882
BpuEI CTTGAG 2 cut(s) 564, 872
BpuMI CCSGG 1 cut(s) 859
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 3 cut(s) 606, 652, 1132
BsaWI WCCGGW 1 cut(s) 352
BsaXI ACNNNNNCTCC 2 cut(s) 927, 957
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 282
Bse118I RCCGGY 1 cut(s) 721
Bse1I ACTGG 2 cut(s) 276, 489
Bse21I CCTNAGG 1 cut(s) 61
BseBI CCWGG 2 cut(s) 183, 306
BseDI CCNNGG 3 cut(s) 606, 652, 1132
BseLI CCNNNNNNNGG 2 cut(s) 281, 282
BseMII CTCAG 4 cut(s) 587, 873, 1006, 1104
BseNI ACTGG 2 cut(s) 276, 489
BseRI GAGGAG 2 cut(s) 942, 951
BseSI GKGCMC 1 cut(s) 567
BseXI GCAGC 3 cut(s) 113, 276, 989
BseYI CCCAGC 1 cut(s) 6
BsiHKAI GWGCWC 1 cut(s) 888
BsiHKCI CYCGRG 1 cut(s) 686
BsiSI CCGG 3 cut(s) 353, 722, 858
BslI CCNNNNNNNGG 2 cut(s) 281, 282
BsmAI GTCTC 3 cut(s) 342, 390, 592
Bso31I GGTCTC 1 cut(s) 342
BsoBI CYCGRG 1 cut(s) 686
Bsp1286I GDGCHC 2 cut(s) 567, 888
Bsp143I GATC 4 cut(s) 271, 682, 706, 964
Bsp1720I GCTNAGC 1 cut(s) 882
BspCNI CTCAG 4 cut(s) 588, 874, 1005, 1103
BspLI GGNNCC 1 cut(s) 1130
BspMAI CTGCAG 1 cut(s) 266
BspPI GGATC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 721
BsrI ACTGG 2 cut(s) 276, 489
BssAI RCCGGY 1 cut(s) 721
BssECI CCNNGG 3 cut(s) 606, 652, 1132
BssMI GATC 4 cut(s) 271, 682, 706, 964
BssT1I CCWWGG 3 cut(s) 606, 652, 1132
Bst2UI CCWGG 2 cut(s) 183, 306
Bst6I CTCTTC 2 cut(s) 82, 623
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 5 cut(s) 61, 596, 882, 992, 1090
BstKTI GATC 4 cut(s) 274, 685, 709, 967
BstMAI GTCTC 3 cut(s) 342, 390, 592
BstMBI GATC 4 cut(s) 271, 682, 706, 964
BstMWI GCNNNNNNNGC 2 cut(s) 264, 562
BstNI CCWGG 2 cut(s) 183, 306
BstSCI CCNGG 3 cut(s) 181, 304, 857
BstSFI CTRYAG 1 cut(s) 262
BstSLI GKGCMC 1 cut(s) 567
BstV1I GCAGC 3 cut(s) 113, 276, 989
Bsu36I CCTNAGG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 1000
Cac8I GCNNGC 1 cut(s) 210
CaiI CAGNNNCTG 1 cut(s) 261
Cfr10I RCCGGY 1 cut(s) 721
CseI GACGC 1 cut(s) 556
Csp6I GTAC 4 cut(s) 439, 508, 807, 1038
CviAII CATG 4 cut(s) 49, 204, 236, 1125
CviQI GTAC 4 cut(s) 439, 508, 807, 1038
DdeI CTNAG 5 cut(s) 61, 596, 882, 992, 1090
DpnI GATC 4 cut(s) 273, 684, 708, 966
DpnII GATC 4 cut(s) 271, 682, 706, 964
Eam1104I CTCTTC 2 cut(s) 82, 623
EarI CTCTTC 2 cut(s) 82, 623
Ecl136II GAGCTC 1 cut(s) 886
Eco130I CCWWGG 3 cut(s) 606, 652, 1132
Eco24I GRGCYC 1 cut(s) 888
Eco31I GGTCTC 1 cut(s) 342
Eco32I GATATC 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 886
Eco81I CCTNAGG 1 cut(s) 61
Eco88I CYCGRG 1 cut(s) 686
EcoICRI GAGCTC 1 cut(s) 886
EcoRII CCWGG 2 cut(s) 181, 304
EcoRV GATATC 1 cut(s) 311
EcoT14I CCWWGG 3 cut(s) 606, 652, 1132
EcoT38I GRGCYC 1 cut(s) 888
ErhI CCWWGG 3 cut(s) 606, 652, 1132
FaeI CATG 4 cut(s) 52, 207, 239, 1128
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FatI CATG 4 cut(s) 48, 203, 235, 1124
FauNDI CATATG 1 cut(s) 1059
FbaI TGATCA 1 cut(s) 964
FblI GTMKAC 1 cut(s) 23
Fnu4HI GCNGC 3 cut(s) 102, 265, 978
FriOI GRGCYC 1 cut(s) 888
Fsp4HI GCNGC 3 cut(s) 102, 265, 978
FspBI CTAG 2 cut(s) 1025, 1035
GluI GCNGC 3 cut(s) 102, 265, 978
GsaI CCCAGC 1 cut(s) 10
HapII CCGG 3 cut(s) 353, 722, 858
HgaI GACGC 1 cut(s) 556
Hin1II CATG 4 cut(s) 52, 207, 239, 1128
HincII GTYRAC 1 cut(s) 350
HindII GTYRAC 1 cut(s) 350
HinfI GANTC 6 cut(s) 56, 232, 383, 518, 711, 1054
HpaII CCGG 3 cut(s) 353, 722, 858
HphI GGTGA 5 cut(s) 392, 470, 605, 736, 1063
Hpy166II GTNNAC 4 cut(s) 24, 350, 510, 946
Hpy188I TCNGA 6 cut(s) 82, 90, 220, 315, 597, 1093
Hpy188III TCNNGA 3 cut(s) 686, 688, 889
Hpy8I GTNNAC 4 cut(s) 24, 350, 510, 946
HpyAV CCTTC 4 cut(s) 311, 371, 854, 1042
HpyCH4IV ACGT 1 cut(s) 512
HpyCH4V TGCA 9 cut(s) 17, 101, 116, 124, 264, 495, 666, 854, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 264, 562
HpyF3I CTNAG 5 cut(s) 61, 596, 882, 992, 1090
HpySE526I ACGT 1 cut(s) 512
Hsp92II CATG 4 cut(s) 52, 207, 239, 1128
Ksp22I TGATCA 1 cut(s) 964
Kzo9I GATC 4 cut(s) 271, 682, 706, 964
LmnI GCTCC 3 cut(s) 248, 929, 1121
Lsp1109I GCAGC 3 cut(s) 113, 276, 989
LweI GCATC 1 cut(s) 464
MaeI CTAG 2 cut(s) 1025, 1035
MaeII ACGT 1 cut(s) 512
MaeIII GTNAC 2 cut(s) 422, 584
MalI GATC 4 cut(s) 273, 684, 708, 966
MboI GATC 4 cut(s) 271, 682, 706, 964
MboII GAAGA 5 cut(s) 69, 141, 610, 658, 839
MhlI GDGCHC 2 cut(s) 567, 888
MluCI AATT 7 cut(s) 240, 362, 445, 728, 918, 1019, 1142
MlyI GAGTC 2 cut(s) 392, 720
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 8 cut(s) 85, 269, 279, 626, 684, 920, 929, 1087
MroXI GAANNNNTTC 1 cut(s) 831
MseI TTAA 2 cut(s) 702, 984
MspA1I CMGCKG 1 cut(s) 104
MspI CCGG 3 cut(s) 353, 722, 858
MspR9I CCNGG 3 cut(s) 183, 306, 859
MvaI CCWGG 2 cut(s) 183, 306
MwoI GCNNNNNNNGC 2 cut(s) 264, 562
NciI CCSGG 1 cut(s) 859
NdeI CATATG 1 cut(s) 1059
NdeII GATC 4 cut(s) 271, 682, 706, 964
NlaIII CATG 4 cut(s) 52, 207, 239, 1128
NlaIV GGNNCC 1 cut(s) 1130
PaeR7I CTCGAG 1 cut(s) 686
PdmI GAANNNNTTC 1 cut(s) 831
PfeI GAWTC 4 cut(s) 56, 232, 518, 1054
PfoI TCCNGGA 1 cut(s) 304
PkrI GCNGC 3 cut(s) 103, 266, 979
PleI GAGTC 2 cut(s) 391, 719
PpsI GAGTC 2 cut(s) 391, 719
PsiI TTATAA 2 cut(s) 432, 531
Psp124BI GAGCTC 1 cut(s) 888
Psp6I CCWGG 2 cut(s) 181, 304
PspFI CCCAGC 1 cut(s) 6
PspGI CCWGG 2 cut(s) 181, 304
PspN4I GGNNCC 1 cut(s) 1130
PstI CTGCAG 1 cut(s) 266
PstNI CAGNNNCTG 1 cut(s) 261
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 4 cut(s) 440, 509, 808, 1039
RsaNI GTAC 4 cut(s) 439, 508, 807, 1038
SacI GAGCTC 1 cut(s) 888
SaqAI TTAA 2 cut(s) 702, 984
SatI GCNGC 3 cut(s) 102, 265, 978
Sau3AI GATC 4 cut(s) 271, 682, 706, 964
ScaI AGTACT 1 cut(s) 1039
SchI GAGTC 2 cut(s) 392, 720
ScrFI CCNGG 3 cut(s) 183, 306, 859
SduI GDGCHC 2 cut(s) 567, 888
SfaNI GCATC 1 cut(s) 464
SfcI CTRYAG 1 cut(s) 262
Sfr274I CTCGAG 1 cut(s) 686
SlaI CTCGAG 1 cut(s) 686
SmlI CTYRAG 3 cut(s) 579, 686, 887
SmoI CTYRAG 3 cut(s) 579, 686, 887
Sse9I AATT 7 cut(s) 240, 362, 445, 728, 918, 1019, 1142
SspMI CTAG 2 cut(s) 1025, 1035
SstI GAGCTC 1 cut(s) 888
StyD4I CCNGG 3 cut(s) 181, 304, 857
StyI CCWWGG 3 cut(s) 606, 652, 1132
TaiI ACGT 1 cut(s) 515
TaqI TCGA 3 cut(s) 160, 687, 709
TasI AATT 7 cut(s) 240, 362, 445, 728, 918, 1019, 1142
TatI WGTACW 3 cut(s) 507, 806, 1037
TfiI GAWTC 4 cut(s) 56, 232, 518, 1054
Tru1I TTAA 2 cut(s) 702, 984
Tru9I TTAA 2 cut(s) 702, 984
TscAI CASTG 1 cut(s) 1000
TseI GCWGC 3 cut(s) 101, 264, 977
TspDTI ATGAA 5 cut(s) 192, 224, 840, 930, 1076
TspRI CASTG 1 cut(s) 1000
XapI RAATTY 4 cut(s) 240, 728, 1019, 1142
XcmI CCANNNNNNNNNTGG 1 cut(s) 189
XhoI CTCGAG 1 cut(s) 686
XmiI GTMKAC 1 cut(s) 23
XmnI GAANNNNTTC 1 cut(s) 831
XspI CTAG 2 cut(s) 1025, 1035
ZrmI AGTACT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.