Rw3G011290

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000166
Physical Location & Seq
Reverse (-)
10954341 .. 10955417
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G011290.1

Sequence Viewer

Length: 1077 bp
ATGCAGGAATTCTTGCCTAGTGGATTCGAGATGCTTGGGATTCGGATATGCGCTGGTCGGATTGGACAATGTTACCCTAAGAGTCTTCTGCTTAATGGATACCGTATGTCAAATGTTAAGAGCATCTTGTATGTTAAGATTCCAAAAGATTTTCTGACCCCTGGTGCAGTCCAAAGCAAACTAGAAGCACATGATTTGAGTTGTTCCGCAACACAGTTTTTTGTAAGTTGTGATCTTGAAACAGAAAAGGGCAATGGAAATCAGTATATGAAATACCTTATCGGATTTGTGAGTTCCTTAGCAATAATTGAAGCAATCTGCATTGGTTTGGCATGGTGGTATGTGTTCCGAAAACAAGCTCATGAGGAACTGGTGAGCGTGGGTTACATGACATTAGCCATAAATGCTGTAGGATTTAAACATTTCACCTATGCAGAACTAAAGAAAGCAACCAATGACTTCAAACAGGAGATAGGAAAAGGAAGGTTCGGAATAGTCTATAAAGGGGTTCTGGATGGTGAAAGATTTGTAGCTGTGAAGAGATTAGAAGGCATTCTGCAAGGAGATGCCGAATTTTGGGCAGAGGTGAGTGTAATAGGGAATATCAATCATATGAACTTGGTTAAACTATATGGTTTCTGTGCGGATAATAATCATAAGCTATTGGTGTATGAGTACCTGGAGAATGGATCCTTGGATAAACTCTTGTTCTCAGAAGTTGAACTTGGATTGGAAAAGCGGTACAAGATTGCATTAGGCACCGCAAAGGGTTTGTCATATCTACATGAGGAGTGCCTTGAATGGGTACTCCACTGTGATGTAAAGCCTCAAAATATACTGTTAGACGACCATCTTGAACCTAAGGTGGCAGATTTTGGTATGTCCAAGTTGTTCAAAGACATTAATGATGAAGGCAATGGATTTTCTAGAGTTCGAGGTACCAGAGGTTATATGGCTCCAGAGTGGATGGTGAATCTGAAAATTGATGCAAAGGCAGATGTCTACAGCTATGGGATTGTTCTGTTGGAGCTACTGACTGGAAAGAGTGCTTCTATTCTGCTTTCAGCTTTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

358

Amino Acids

40.19

Weight (kDa)

6.27

Isoelectric Point (pI)

22.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 154 - 348 8.4e-40 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 155 - 349 4.7e-47 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 938
AccB1I GGYRCC 2 cut(s) 758, 938
AccI GTMKAC 1 cut(s) 1002
AciI CCGC 4 cut(s) 207, 644, 739, 762
AclWI GGATC 2 cut(s) 684, 697
AcsI RAATTY 2 cut(s) 8, 572
AfaI GTAC 4 cut(s) 677, 743, 807, 940
AfiI CCNNNNNNNGG 2 cut(s) 576, 802
AgsI TTSAA 7 cut(s) 239, 311, 463, 722, 800, 857, 895
AjnI CCWGG 2 cut(s) 160, 678
AjuI GAANNNNNNNTTGG 4 cut(s) 677, 708, 709, 740
AluBI AGCT 6 cut(s) 359, 533, 661, 1008, 1030, 1067
AluI AGCT 6 cut(s) 359, 533, 661, 1008, 1030, 1067
AlwI GGATC 2 cut(s) 684, 697
ApoI RAATTY 2 cut(s) 8, 572
ArsI GACNNNNNNTTYG 2 cut(s) 758, 790
AseI ATTAAT 1 cut(s) 903
Asp700I GAANNNNTTC 1 cut(s) 552
Asp718I GGTACC 1 cut(s) 938
AspLEI GCGC 1 cut(s) 53
AsuHPI GGTGA 5 cut(s) 385, 418, 530, 598, 982
AxyI CCTNAGG 1 cut(s) 861
BamHI GGATCC 1 cut(s) 689
BanI GGYRCC 2 cut(s) 758, 938
BbsI GAAGAC 1 cut(s) 77
BccI CCATC 3 cut(s) 509, 858, 961
BciT130I CCWGG 2 cut(s) 162, 680
BciVI GTATCC 1 cut(s) 92
BfaI CTAG 3 cut(s) 18, 182, 927
BfmI CTRYAG 2 cut(s) 408, 1003
BfuI GTATCC 1 cut(s) 92
Bme1390I CCNGG 2 cut(s) 162, 680
BmiI GGNNCC 4 cut(s) 691, 760, 940, 957
BmrFI CCNGG 2 cut(s) 162, 680
BmsI GCATC 4 cut(s) 21, 132, 556, 976
BpiI GAAGAC 1 cut(s) 77
BpmI CTGGAG 2 cut(s) 701, 942
Bpu10I CCTNAGC 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 651
BsaJI CCNNGG 2 cut(s) 160, 693
Bsc4I CCNNNNNNNGG 2 cut(s) 576, 802
Bse1I ACTGG 2 cut(s) 375, 1042
Bse21I CCTNAGG 1 cut(s) 861
Bse3DI GCAATG 2 cut(s) 259, 922
Bse8I GATNNNNATC 1 cut(s) 651
BseBI CCWGG 2 cut(s) 162, 680
BseDI CCNNGG 2 cut(s) 160, 693
BseGI GGATG 2 cut(s) 520, 972
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 2 cut(s) 576, 802
BseMI GCAATG 2 cut(s) 259, 922
BseMII CTCAG 1 cut(s) 726
BseNI ACTGG 2 cut(s) 375, 1042
BseRI GAGGAG 1 cut(s) 803
BsgI GTGCAG 1 cut(s) 186
BshNI GGYRCC 2 cut(s) 758, 938
BslI CCNNNNNNNGG 2 cut(s) 576, 802
BsmI GAATGC 1 cut(s) 552
Bsp143I GATC 2 cut(s) 232, 689
BspACI CCGC 4 cut(s) 207, 644, 739, 762
BspCNI CTCAG 1 cut(s) 725
BspHI TCATGA 1 cut(s) 361
BspLI GGNNCC 4 cut(s) 691, 760, 940, 957
BspPI GGATC 2 cut(s) 684, 697
BspT107I GGYRCC 2 cut(s) 758, 938
BsrDI GCAATG 2 cut(s) 259, 922
BsrI ACTGG 2 cut(s) 375, 1042
BssECI CCNNGG 2 cut(s) 160, 693
BssMI GATC 2 cut(s) 232, 689
BssT1I CCWWGG 1 cut(s) 693
Bst2UI CCWGG 2 cut(s) 162, 680
Bst4CI ACNGT 4 cut(s) 104, 216, 815, 840
Bst6I CTCTTC 1 cut(s) 533
BstDEI CTNAG 4 cut(s) 78, 298, 712, 861
BstF5I GGATG 2 cut(s) 520, 972
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 2 cut(s) 235, 692
BstMBI GATC 2 cut(s) 232, 689
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 2 cut(s) 162, 680
BstSCI CCNGG 2 cut(s) 160, 678
BstSFI CTRYAG 2 cut(s) 408, 1003
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 1 cut(s) 689
BstYI RGATCY 1 cut(s) 689
Bsu36I CCTNAGG 1 cut(s) 861
BsuI GTATCC 1 cut(s) 92
BtsCI GGATG 2 cut(s) 520, 972
BtsIMutI CAGTG 1 cut(s) 811
CciI TCATGA 1 cut(s) 361
CfoI GCGC 1 cut(s) 53
Csp6I GTAC 4 cut(s) 676, 742, 806, 939
CviAII CATG 5 cut(s) 191, 333, 362, 388, 785
CviJI RGCY 9 cut(s) 359, 398, 533, 661, 826, 956, 1008, 1030, 1067
CviKI_1 RGCY 9 cut(s) 359, 398, 533, 661, 826, 956, 1008, 1030, 1067
CviQI GTAC 4 cut(s) 676, 742, 806, 939
DdeI CTNAG 4 cut(s) 78, 298, 712, 861
DpnI GATC 2 cut(s) 234, 691
DpnII GATC 2 cut(s) 232, 689
DraI TTTAAA 1 cut(s) 418
Eam1104I CTCTTC 1 cut(s) 533
EarI CTCTTC 1 cut(s) 533
Eco130I CCWWGG 1 cut(s) 693
Eco81I CCTNAGG 1 cut(s) 861
EcoRI GAATTC 1 cut(s) 8
EcoRII CCWGG 2 cut(s) 160, 678
EcoT14I CCWWGG 1 cut(s) 693
ErhI CCWWGG 1 cut(s) 693
FaeI CATG 5 cut(s) 194, 336, 365, 391, 788
FalI AAGNNNNNCTT 4 cut(s) 110, 142, 708, 740
FatI CATG 5 cut(s) 190, 332, 361, 387, 784
FauNDI CATATG 1 cut(s) 612
FblI GTMKAC 1 cut(s) 1002
FokI GGATG 2 cut(s) 527, 979
FspBI CTAG 3 cut(s) 18, 182, 927
GlaI GCGC 1 cut(s) 52
GsuI CTGGAG 2 cut(s) 701, 942
HhaI GCGC 1 cut(s) 53
Hin1II CATG 5 cut(s) 194, 336, 365, 391, 788
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 5 cut(s) 24, 40, 82, 139, 973
HphI GGTGA 5 cut(s) 385, 418, 530, 598, 982
Hpy166II GTNNAC 1 cut(s) 1003
Hpy188I TCNGA 8 cut(s) 45, 60, 156, 284, 350, 491, 715, 978
Hpy188III TCNNGA 7 cut(s) 28, 236, 362, 512, 854, 927, 959
Hpy8I GTNNAC 1 cut(s) 1003
HpyAV CCTTC 3 cut(s) 477, 542, 905
HpyCH4III ACNGT 4 cut(s) 104, 216, 815, 840
HpyCH4V TGCA 8 cut(s) 4, 167, 321, 434, 559, 752, 989, 1073
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 4 cut(s) 78, 298, 712, 861
Hsp92II CATG 5 cut(s) 194, 336, 365, 391, 788
HspAI GCGC 1 cut(s) 51
KpnI GGTACC 1 cut(s) 942
Kzo9I GATC 2 cut(s) 232, 689
LmnI GCTCC 2 cut(s) 961, 1027
LweI GCATC 4 cut(s) 21, 132, 556, 976
MaeI CTAG 3 cut(s) 18, 182, 927
MaeIII GTNAC 2 cut(s) 71, 383
MalI GATC 2 cut(s) 234, 691
MboI GATC 2 cut(s) 232, 689
MboII GAAGA 2 cut(s) 77, 550
MflI RGATCY 1 cut(s) 689
MluCI AATT 4 cut(s) 8, 306, 572, 981
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 2 cut(s) 38, 1005
MnlI CCTC 6 cut(s) 358, 577, 781, 837, 929, 938
MroXI GAANNNNTTC 1 cut(s) 552
MseI TTAA 6 cut(s) 93, 117, 135, 417, 624, 903
MslI CAYNNNNRTG 1 cut(s) 816
MspR9I CCNGG 2 cut(s) 162, 680
Mva1269I GAATGC 1 cut(s) 552
MvaI CCWGG 2 cut(s) 162, 680
MwoI GCNNNNNNNGC 1 cut(s) 404
NdeI CATATG 1 cut(s) 612
NdeII GATC 2 cut(s) 232, 689
NlaIII CATG 5 cut(s) 194, 336, 365, 391, 788
NlaIV GGNNCC 4 cut(s) 691, 760, 940, 957
PagI TCATGA 1 cut(s) 361
PctI GAATGC 1 cut(s) 552
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 4 cut(s) 24, 40, 139, 973
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PshBI ATTAAT 1 cut(s) 903
Psp6I CCWGG 2 cut(s) 160, 678
PspGI CCWGG 2 cut(s) 160, 678
PspN4I GGNNCC 4 cut(s) 691, 760, 940, 957
PsuI RGATCY 1 cut(s) 689
RsaI GTAC 4 cut(s) 677, 743, 807, 940
RsaNI GTAC 4 cut(s) 676, 742, 806, 939
RseI CAYNNNNRTG 1 cut(s) 816
SaqAI TTAA 6 cut(s) 93, 117, 135, 417, 624, 903
Sau3AI GATC 2 cut(s) 232, 689
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 2 cut(s) 162, 680
SfaNI GCATC 4 cut(s) 21, 132, 556, 976
SfcI CTRYAG 2 cut(s) 408, 1003
SmiMI CAYNNNNRTG 1 cut(s) 816
Sse9I AATT 4 cut(s) 8, 306, 572, 981
SsiI CCGC 4 cut(s) 207, 644, 739, 762
SspMI CTAG 3 cut(s) 18, 182, 927
StyD4I CCNGG 2 cut(s) 160, 678
StyI CCWWGG 1 cut(s) 693
TaaI ACNGT 4 cut(s) 104, 216, 815, 840
TaqI TCGA 2 cut(s) 27, 934
TasI AATT 4 cut(s) 8, 306, 572, 981
TfiI GAWTC 4 cut(s) 24, 40, 139, 973
Tru1I TTAA 6 cut(s) 93, 117, 135, 417, 624, 903
Tru9I TTAA 6 cut(s) 93, 117, 135, 417, 624, 903
TscAI CASTG 1 cut(s) 818
TspDTI ATGAA 3 cut(s) 284, 629, 924
TspRI CASTG 1 cut(s) 818
VspI ATTAAT 1 cut(s) 903
XapI RAATTY 2 cut(s) 8, 572
XbaI TCTAGA 1 cut(s) 926
XcmI CCANNNNNNNNNTGG 1 cut(s) 949
XmiI GTMKAC 1 cut(s) 1002
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 3 cut(s) 18, 182, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.