Rmu_sc0004362.1_g000026

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004362.1
OG0000166
Physical Location & Seq
Forward (+)
95055 .. 95672
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004362.1_g000026.1.cds

Sequence Viewer

Length: 618 bp
atgagaggccaaggtacatacttatctggattctataactttaagttcgatgataacagtatcttgtttctcatctacaatggcgctctactttctagtgtttattggtcccagattgtttcaactgtttttgaaagtggtagaaatccttacaacagctctagagtggcaattttagatgtggctggacaatttatatctagtgacaatatgcagttctatgcatctgactatggggttggtccaaagcggcgtctaacagtggattatgatggcatcttaagactgtacagtcttcatgaatcgacagggttgtggaaactctcatggttgcctgatagtgttgatgcatgccgagttcagggcttgtgcgatgaatatggtatttgcacatacaaaccacaacctacttgtacctgcccttcggagttttccctaaacgatccctcagactggtccaaaggctgctcacctcccttcaatttgacccaagatacaagcaagctagacttccgtgagctcccttacacagattactatggatatgatgtaagtacaatacttgtacatatcgtattggcattcccatacaaaatttatgacaaagcccgttactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

205

Amino Acids

23.38

Weight (kDa)

4.94

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Tree File
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 291
Acc36I ACCTGC 1 cut(s) 425
AciI CCGC 1 cut(s) 250
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 1 cut(s) 594
AcyI GRCGYC 1 cut(s) 253
AfaI GTAC 5 cut(s) 16, 290, 415, 556, 567
AfiI CCNNNNNNNGG 2 cut(s) 361, 453
AflII CTTAAG 1 cut(s) 280
AgsI TTSAA 3 cut(s) 123, 134, 481
AluBI AGCT 3 cut(s) 159, 505, 520
AluI AGCT 3 cut(s) 159, 505, 520
Alw21I GWGCWC 1 cut(s) 522
AlwI GGATC 1 cut(s) 437
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 1 cut(s) 465
ApoI RAATTY 1 cut(s) 594
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 3 cut(s) 108, 242, 456
AsuHPI GGTGA 1 cut(s) 462
AvaII GGWCC 3 cut(s) 108, 242, 456
BanII GRGCYC 1 cut(s) 522
BarI GAAGNNNNNNTAC 2 cut(s) 406, 438
BbsI GAAGAC 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 1 cut(s) 452
BccI CCATC 1 cut(s) 266
BfaI CTAG 4 cut(s) 96, 162, 201, 506
BfoI RGCGCY 1 cut(s) 87
BfrI CTTAAG 1 cut(s) 280
BfuAI ACCTGC 1 cut(s) 425
BisI GCNGC 2 cut(s) 251, 466
BlsI GCNGC 2 cut(s) 252, 467
Bme18I GGWCC 3 cut(s) 108, 242, 456
BmgT120I GGNCC 3 cut(s) 108, 242, 456
BmiI GGNNCC 1 cut(s) 110
BmsI GCATC 3 cut(s) 233, 285, 337
BpiI GAAGAC 1 cut(s) 287
BsaHI GRCGYC 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 10
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 453
Bse1I ACTGG 1 cut(s) 458
BseDI CCNNGG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 361, 453
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 1 cut(s) 458
BseXI GCAGC 1 cut(s) 452
BshFI GGCC 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 522
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 2 cut(s) 361, 453
BsmFI GGGAC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 581
BsnI GGCC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 522
Bsp1407I TGTACA 2 cut(s) 288, 565
Bsp143I GATC 1 cut(s) 442
BspACI CCGC 1 cut(s) 250
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 461
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 110
BspMI ACCTGC 1 cut(s) 425
BspPI GGATC 1 cut(s) 437
BspTI CTTAAG 1 cut(s) 280
BsrGI TGTACA 2 cut(s) 288, 565
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 1 cut(s) 442
BssNI GRCGYC 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 10
Bst4CI ACNGT 5 cut(s) 59, 127, 262, 288, 293
BstACI GRCGYC 1 cut(s) 253
BstAFI CTTAAG 1 cut(s) 280
BstAUI TGTACA 2 cut(s) 288, 565
BstC8I GCNNGC 2 cut(s) 352, 503
BstDEI CTNAG 1 cut(s) 448
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 1 cut(s) 445
BstMBI GATC 1 cut(s) 442
BstNSI RCATGY 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 452
BstV2I GAAGAC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 9
BtgZI GCGATG 1 cut(s) 387
BtsIMutI CAGTG 1 cut(s) 267
BveI ACCTGC 1 cut(s) 425
Cac8I GCNNGC 2 cut(s) 352, 503
CciI TCATGA 1 cut(s) 298
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 3 cut(s) 108, 242, 456
CseI GACGC 1 cut(s) 242
Csp6I GTAC 5 cut(s) 15, 289, 414, 555, 566
CviAII CATG 3 cut(s) 299, 327, 351
CviJI RGCY 8 cut(s) 9, 159, 185, 366, 465, 505, 520, 608
CviKI_1 RGCY 8 cut(s) 9, 159, 185, 366, 465, 505, 520, 608
CviQI GTAC 5 cut(s) 15, 289, 414, 555, 566
DdeI CTNAG 1 cut(s) 448
DpnI GATC 1 cut(s) 444
DpnII GATC 1 cut(s) 442
DrdI GACNNNNNNGTC 1 cut(s) 291
DseDI GACNNNNNNGTC 1 cut(s) 291
Ecl136II GAGCTC 1 cut(s) 520
Eco130I CCWWGG 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 522
Eco47I GGWCC 3 cut(s) 108, 242, 456
Eco53kI GAGCTC 1 cut(s) 520
EcoICRI GAGCTC 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 10
EcoT22I ATGCAT 2 cut(s) 226, 352
EcoT38I GRGCYC 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 3 cut(s) 302, 330, 354
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FaqI GGGAC 1 cut(s) 94
FatI CATG 3 cut(s) 298, 326, 350
Fnu4HI GCNGC 2 cut(s) 251, 466
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 2 cut(s) 251, 466
FspBI CTAG 4 cut(s) 96, 162, 201, 506
GlaI GCGC 1 cut(s) 85
GluI GCNGC 2 cut(s) 251, 466
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 1 cut(s) 9
HgaI GACGC 1 cut(s) 242
HhaI GCGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 253
Hin1II CATG 3 cut(s) 302, 330, 354
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 2 cut(s) 30, 302
HphI GGTGA 1 cut(s) 462
Hpy188I TCNGA 3 cut(s) 229, 427, 451
Hpy188III TCNNGA 3 cut(s) 27, 162, 299
HpyAV CCTTC 2 cut(s) 432, 487
HpyCH4III ACNGT 5 cut(s) 59, 127, 262, 288, 293
HpyCH4V TGCA 4 cut(s) 214, 224, 350, 390
HpyF3I CTNAG 1 cut(s) 448
Hsp92I GRCGYC 1 cut(s) 253
Hsp92II CATG 3 cut(s) 302, 330, 354
HspAI GCGC 1 cut(s) 84
Kzo9I GATC 1 cut(s) 442
LmnI GCTCC 1 cut(s) 525
LpnPI CCDG 8 cut(s) 12, 125, 171, 294, 347, 348, 430, 439
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 3 cut(s) 233, 285, 337
MaeI CTAG 4 cut(s) 96, 162, 201, 506
MaeIII GTNAC 2 cut(s) 203, 611
MalI GATC 1 cut(s) 444
MboI GATC 1 cut(s) 442
MboII GAAGA 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 4 cut(s) 171, 191, 481, 594
MnlI CCTC 2 cut(s) 457, 483
Mph1103I ATGCAT 2 cut(s) 226, 352
MseI TTAA 2 cut(s) 42, 281
MspCI CTTAAG 1 cut(s) 280
Mva1269I GAATGC 1 cut(s) 581
NdeII GATC 1 cut(s) 442
NlaIII CATG 3 cut(s) 302, 330, 354
NlaIV GGNNCC 1 cut(s) 110
NmeAIII GCCGAG 1 cut(s) 380
NmuCI GTSAC 1 cut(s) 203
NsiI ATGCAT 2 cut(s) 226, 352
NspI RCATGY 1 cut(s) 354
PaeI GCATGC 1 cut(s) 354
PagI TCATGA 1 cut(s) 298
PctI GAATGC 1 cut(s) 581
PfeI GAWTC 2 cut(s) 30, 302
PkrI GCNGC 2 cut(s) 252, 467
Psp124BI GAGCTC 1 cut(s) 522
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 3 cut(s) 108, 242, 456
RsaI GTAC 5 cut(s) 16, 290, 415, 556, 567
RsaNI GTAC 5 cut(s) 15, 289, 414, 555, 566
SacI GAGCTC 1 cut(s) 522
SaqAI TTAA 2 cut(s) 42, 281
SatI GCNGC 2 cut(s) 251, 466
Sau3AI GATC 1 cut(s) 442
Sau96I GGNCC 3 cut(s) 108, 242, 456
SduI GDGCHC 1 cut(s) 522
SetI ASST 7 cut(s) 16, 161, 409, 419, 475, 507, 522
SfaNI GCATC 3 cut(s) 233, 285, 337
SinI GGWCC 3 cut(s) 108, 242, 456
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
SphI GCATGC 1 cut(s) 354
Sse9I AATT 4 cut(s) 171, 191, 481, 594
SsiI CCGC 1 cut(s) 250
SspMI CTAG 4 cut(s) 96, 162, 201, 506
SstI GAGCTC 1 cut(s) 522
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 5 cut(s) 59, 127, 262, 288, 293
TaqI TCGA 2 cut(s) 48, 305
TasI AATT 4 cut(s) 171, 191, 481, 594
TatI WGTACW 3 cut(s) 288, 554, 565
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 2 cut(s) 30, 302
Tru1I TTAA 2 cut(s) 42, 281
Tru9I TTAA 2 cut(s) 42, 281
TscAI CASTG 1 cut(s) 267
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 465
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 3 cut(s) 287, 315, 390
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 1 cut(s) 267
Vha464I CTTAAG 1 cut(s) 280
VpaK11BI GGWCC 3 cut(s) 108, 242, 456
XapI RAATTY 1 cut(s) 594
XbaI TCTAGA 1 cut(s) 161
XceI RCATGY 1 cut(s) 354
XspI CTAG 4 cut(s) 96, 162, 201, 506
Zsp2I ATGCAT 2 cut(s) 226, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.