RLG00000024665

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
38010442 .. 38011445
1004 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024665

Sequence Viewer

Length: 366 bp
ATGTCAAAGTTATTCAAAGTCAACATTGATGATGCAGGCATTGGATTTTCTAGAGTTCGAGGCACCAGAGGTTATATGGCTCTAGAGTGGATGGTGAACCTTAAAATTGATGCAAAGGCAGATGTCTACAGCTATGGGATTGTTTTGTTGGAGCTACTGAGTGGAAAGAAGTCGAAGGGCTTAAGAAAGCGATTGATCCTAGACTCTCATAATTTCAACAAGAAGAAGCTCGAAAGATTGATGAAGGTTGCTCTTCTGTGTGTGCAAGAAGACCGCAGTGCAAGACCTGCCATGAGCAAGGTTGTAGAGCTTCTACTTGAGAATGCTGAGGGAAGAGTAGATGATGAAGAATTGAGGATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

122

Amino Acids

13.78

Weight (kDa)

9.55

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 16 - 106 3.5e-08 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 25 - 105 1.3e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 295
AccB1I GGYRCC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 126
AciI CCGC 1 cut(s) 274
AclWI GGATC 2 cut(s) 190, 365
AflII CTTAAG 1 cut(s) 181
AgsI TTSAA 2 cut(s) 16, 217
AluBI AGCT 4 cut(s) 132, 154, 229, 310
AluI AGCT 4 cut(s) 132, 154, 229, 310
AlwI GGATC 2 cut(s) 190, 365
AsuHPI GGTGA 1 cut(s) 106
BanI GGYRCC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 276
BbvCI CCTCAGC 1 cut(s) 327
BccI CCATC 1 cut(s) 85
BfaI CTAG 3 cut(s) 51, 83, 200
BfmI CTRYAG 1 cut(s) 127
BfrI CTTAAG 1 cut(s) 181
BfuAI ACCTGC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 64
BmsI GCATC 2 cut(s) 22, 100
BpiI GAAGAC 1 cut(s) 276
Bpu10I CCTNAGC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 338
BseGI GGATG 1 cut(s) 96
BseMII CTCAG 2 cut(s) 149, 318
BshNI GGYRCC 1 cut(s) 62
BsmI GAATGC 1 cut(s) 328
Bsp143I GATC 2 cut(s) 195, 357
BspACI CCGC 1 cut(s) 274
BspCNI CTCAG 2 cut(s) 150, 319
BspLI GGNNCC 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 295
BspPI GGATC 2 cut(s) 190, 365
BspQI GCTCTTC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 62
BspTI CTTAAG 1 cut(s) 181
BssMI GATC 2 cut(s) 195, 357
Bst6I CTCTTC 2 cut(s) 258, 328
BstAFI CTTAAG 1 cut(s) 181
BstAPI GCANNNNNTGC 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 158, 327
BstF5I GGATG 1 cut(s) 96
BstKTI GATC 2 cut(s) 198, 360
BstMBI GATC 2 cut(s) 195, 357
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 276
BtsCI GGATG 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 283
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 37
CviAII CATG 1 cut(s) 292
CviJI RGCY 6 cut(s) 80, 132, 154, 180, 229, 310
CviKI_1 RGCY 6 cut(s) 80, 132, 154, 180, 229, 310
DdeI CTNAG 2 cut(s) 158, 327
DpnI GATC 2 cut(s) 197, 359
DpnII GATC 2 cut(s) 195, 357
Eam1104I CTCTTC 2 cut(s) 258, 328
EarI CTCTTC 2 cut(s) 258, 328
FaeI CATG 1 cut(s) 295
FaiI YATR 7 cut(s) 75, 77, 135, 210, 293, 362, 364
FatI CATG 1 cut(s) 291
FblI GTMKAC 1 cut(s) 126
FokI GGATG 1 cut(s) 103
FspBI CTAG 3 cut(s) 51, 83, 200
Hin1II CATG 1 cut(s) 295
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 1 cut(s) 203
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 3 cut(s) 22, 97, 127
Hpy188III TCNNGA 2 cut(s) 51, 83
Hpy8I GTNNAC 3 cut(s) 22, 97, 127
HpyAV CCTTC 2 cut(s) 169, 238
HpyCH4V TGCA 4 cut(s) 35, 113, 265, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 2 cut(s) 158, 327
Hsp92II CATG 1 cut(s) 295
Kzo9I GATC 2 cut(s) 195, 357
LguI GCTCTTC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 3 cut(s) 21, 79, 300
LweI GCATC 2 cut(s) 22, 100
MaeI CTAG 3 cut(s) 51, 83, 200
MalI GATC 2 cut(s) 197, 359
MboI GATC 2 cut(s) 195, 357
MboII GAAGA 5 cut(s) 235, 245, 281, 345, 359
MluCI AATT 3 cut(s) 105, 211, 350
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 4 cut(s) 53, 62, 322, 348
MseI TTAA 2 cut(s) 102, 182
MspCI CTTAAG 1 cut(s) 181
Mva1269I GAATGC 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 2 cut(s) 195, 357
NlaIII CATG 1 cut(s) 295
NlaIV GGNNCC 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 258
PctI GAATGC 1 cut(s) 328
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 2 cut(s) 102, 182
Sau3AI GATC 2 cut(s) 195, 357
SchI GAGTC 1 cut(s) 197
SetI ASST 9 cut(s) 73, 102, 134, 156, 231, 249, 289, 303, 312
SfaNI GCATC 2 cut(s) 22, 100
SfcI CTRYAG 1 cut(s) 127
SmlI CTYRAG 2 cut(s) 181, 317
SmoI CTYRAG 2 cut(s) 181, 317
Sse9I AATT 3 cut(s) 105, 211, 350
SsiI CCGC 1 cut(s) 274
SspMI CTAG 3 cut(s) 51, 83, 200
TaqI TCGA 3 cut(s) 58, 173, 231
TasI AATT 3 cut(s) 105, 211, 350
Tru1I TTAA 2 cut(s) 102, 182
Tru9I TTAA 2 cut(s) 102, 182
TscAI CASTG 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 257, 360
TspRI CASTG 1 cut(s) 283
Vha464I CTTAAG 1 cut(s) 181
XbaI TCTAGA 2 cut(s) 50, 82
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 3 cut(s) 51, 83, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.