Rh3BG138000

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000166
Physical Location & Seq
Reverse (-)
11716589 .. 11717317
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG138000.1

Sequence Viewer

Length: 729 bp
ATGAGAAGCCAAGGTACATACTTATCTGGGTTCTATAACTTCAAATTCGACGATAACAATGTCTTGTTTCTCATCTACAATGGCCCTCAACTTTCTAGTGTTTATTGGCCCCGGATTATTCCAAGTGTTTTTGAAAGTGGTAGAAATCCTTACAACAGCTCAAGGGTGGCAATTTTAGATGTGGCTGGACAATTTATATCTAGTGACAATATGCAGTTCAATGCATCTGACTACGGGGTTGGTCCAAAGCGGCGTCTAACGGTGGATTATGATGGCATCTTAAGACTGTACAGTCTTCATGAATCGACAGGGTTGTGGAAACTCTCATGGTTGCCTGATAGTGTTGATGCATGCCGGGTTCAGGGCTTGTGCGGTGAATATGGTATTTGCACATACAAACCACAACCTACTTGTACCTGCCCTTCGGGGTTTTCCCTAAACGATCCCTCAGACTGGTCCAAAGGCTGCTCACCTCCCTTCAATTTGACTCAACTCACTCAAGATACAAGCAAGCTGGATTTCCTGGAGCTTCCTTACACAGATTACTATGGATATGACATGGCAACCTATACTCGTGGAATCTCTTTTGAAGCATGCAGGAATTCATGTCTAATGCATTCAAGTTGCTTGGGATTCGGATATGCACTGGATGGGATCGGAGAATGTTACCCCAAGAGTCTTCTGCTTAATGGATATCGTTTTCGAATGTTAAGAGCATCATCCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

242

Amino Acids

27.27

Weight (kDa)

5.68

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 83 - 145 1.8e-09 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 291
Acc36I ACCTGC 1 cut(s) 425
AciI CCGC 2 cut(s) 250, 372
AclWI GGATC 2 cut(s) 437, 662
AcsI RAATTY 2 cut(s) 44, 601
AcyI GRCGYC 1 cut(s) 253
AfaI GTAC 3 cut(s) 16, 290, 415
AfiI CCNNNNNNNGG 2 cut(s) 361, 453
AflII CTTAAG 1 cut(s) 280
AgsI TTSAA 6 cut(s) 43, 134, 220, 481, 590, 621
AjnI CCWGG 1 cut(s) 522
AluBI AGCT 3 cut(s) 159, 514, 529
AluI AGCT 3 cut(s) 159, 514, 529
AlwI GGATC 2 cut(s) 437, 662
AoxI GGCC 2 cut(s) 82, 107
ApeKI GCWGC 1 cut(s) 465
ApoI RAATTY 2 cut(s) 44, 601
AspS9I GGNCC 4 cut(s) 83, 108, 242, 456
AsuC2I CCSGG 2 cut(s) 112, 356
AsuHPI GGTGA 2 cut(s) 386, 462
AsuII TTCGAA 1 cut(s) 703
AvaII GGWCC 2 cut(s) 242, 456
BarI GAAGNNNNNNTAC 3 cut(s) 30, 406, 438
BauI CACGAG 1 cut(s) 573
BbsI GAAGAC 2 cut(s) 287, 671
BbvI GCAGC 1 cut(s) 452
BccI CCATC 2 cut(s) 266, 644
BciT130I CCWGG 1 cut(s) 524
BcnI CCSGG 2 cut(s) 112, 356
BfaI CTAG 2 cut(s) 96, 201
BfrI CTTAAG 1 cut(s) 280
BfuAI ACCTGC 1 cut(s) 425
BisI GCNGC 2 cut(s) 251, 466
BlsI GCNGC 2 cut(s) 252, 467
Bme1390I CCNGG 3 cut(s) 112, 356, 524
Bme18I GGWCC 2 cut(s) 242, 456
BmgT120I GGNCC 4 cut(s) 83, 108, 242, 456
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 3 cut(s) 112, 356, 524
BmsI GCATC 4 cut(s) 233, 285, 337, 725
BpiI GAAGAC 2 cut(s) 287, 671
BpmI CTGGAG 1 cut(s) 545
Bpu14I TTCGAA 1 cut(s) 703
BpuEI CTTGAG 2 cut(s) 145, 483
BpuMI CCSGG 2 cut(s) 112, 356
BsaHI GRCGYC 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 10, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 453
Bse1I ACTGG 2 cut(s) 458, 651
BseBI CCWGG 1 cut(s) 524
BseDI CCNNGG 2 cut(s) 10, 110
BseGI GGATG 2 cut(s) 655, 719
BseLI CCNNNNNNNGG 2 cut(s) 361, 453
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 2 cut(s) 458, 651
BseXI GCAGC 1 cut(s) 452
BshFI GGCC 2 cut(s) 84, 109
BsiSI CCGG 2 cut(s) 112, 355
BslI CCNNNNNNNGG 2 cut(s) 361, 453
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 2 cut(s) 84, 109
Bsp119I TTCGAA 1 cut(s) 703
Bsp1407I TGTACA 1 cut(s) 288
Bsp143I GATC 2 cut(s) 442, 654
BspACI CCGC 2 cut(s) 250, 372
BspANI GGCC 2 cut(s) 84, 109
BspCNI CTCAG 1 cut(s) 461
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 110
BspMI ACCTGC 1 cut(s) 425
BspPI GGATC 2 cut(s) 437, 662
BspT104I TTCGAA 1 cut(s) 703
BspTI CTTAAG 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 288
BsrI ACTGG 2 cut(s) 458, 651
BssECI CCNNGG 2 cut(s) 10, 110
BssMI GATC 2 cut(s) 442, 654
BssNI GRCGYC 1 cut(s) 253
BssSI CACGAG 1 cut(s) 573
BssT1I CCWWGG 1 cut(s) 10
Bst2BI CACGAG 1 cut(s) 573
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 3 cut(s) 262, 288, 293
BstACI GRCGYC 1 cut(s) 253
BstAFI CTTAAG 1 cut(s) 280
BstAUI TGTACA 1 cut(s) 288
BstBI TTCGAA 1 cut(s) 703
BstC8I GCNNGC 3 cut(s) 352, 512, 595
BstDEI CTNAG 1 cut(s) 448
BstF5I GGATG 2 cut(s) 655, 719
BstKTI GATC 2 cut(s) 445, 657
BstMBI GATC 2 cut(s) 442, 654
BstNI CCWGG 1 cut(s) 524
BstNSI RCATGY 2 cut(s) 354, 597
BstSCI CCNGG 3 cut(s) 110, 354, 522
BstV1I GCAGC 1 cut(s) 452
BstV2I GAAGAC 2 cut(s) 287, 671
BsuRI GGCC 2 cut(s) 84, 109
BtsCI GGATG 2 cut(s) 655, 719
BtsIMutI CAGTG 1 cut(s) 644
BveI ACCTGC 1 cut(s) 425
Cac8I GCNNGC 3 cut(s) 352, 512, 595
CciI TCATGA 1 cut(s) 298
Cfr13I GGNCC 4 cut(s) 83, 108, 242, 456
CseI GACGC 1 cut(s) 242
Csp6I GTAC 3 cut(s) 15, 289, 414
CviAII CATG 7 cut(s) 299, 327, 351, 559, 594, 606, 724
CviJI RGCY 9 cut(s) 9, 84, 109, 159, 185, 366, 465, 514, 529
CviKI_1 RGCY 9 cut(s) 9, 84, 109, 159, 185, 366, 465, 514, 529
CviQI GTAC 3 cut(s) 15, 289, 414
DdeI CTNAG 1 cut(s) 448
DpnI GATC 2 cut(s) 444, 656
DpnII GATC 2 cut(s) 442, 654
DrdI GACNNNNNNGTC 1 cut(s) 291
DseDI GACNNNNNNGTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 10
Eco32I GATATC 1 cut(s) 695
Eco47I GGWCC 2 cut(s) 242, 456
EcoRI GAATTC 1 cut(s) 601
EcoRII CCWGG 1 cut(s) 522
EcoRV GATATC 1 cut(s) 695
EcoT14I CCWWGG 1 cut(s) 10
EcoT22I ATGCAT 3 cut(s) 226, 352, 618
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 7 cut(s) 302, 330, 354, 562, 597, 609, 727
FatI CATG 7 cut(s) 298, 326, 350, 558, 593, 605, 723
Fnu4HI GCNGC 2 cut(s) 251, 466
FokI GGATG 2 cut(s) 662, 706
Fsp4HI GCNGC 2 cut(s) 251, 466
FspBI CTAG 2 cut(s) 96, 201
GluI GCNGC 2 cut(s) 251, 466
GsuI CTGGAG 1 cut(s) 545
HaeIII GGCC 2 cut(s) 84, 109
HapII CCGG 2 cut(s) 112, 355
HgaI GACGC 1 cut(s) 242
Hin1I GRCGYC 1 cut(s) 253
Hin1II CATG 7 cut(s) 302, 330, 354, 562, 597, 609, 727
HinfI GANTC 5 cut(s) 302, 487, 579, 633, 676
HpaII CCGG 2 cut(s) 112, 355
HphI GGTGA 2 cut(s) 386, 462
Hpy188I TCNGA 4 cut(s) 229, 451, 638, 659
Hpy188III TCNNGA 2 cut(s) 299, 500
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 2 cut(s) 432, 487
HpyCH4III ACNGT 3 cut(s) 262, 288, 293
HpyCH4V TGCA 7 cut(s) 214, 224, 350, 390, 597, 616, 644
HpyF3I CTNAG 1 cut(s) 448
Hsp92I GRCGYC 1 cut(s) 253
Hsp92II CATG 7 cut(s) 302, 330, 354, 562, 597, 609, 727
Kzo9I GATC 2 cut(s) 442, 654
LmnI GCTCC 1 cut(s) 526
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 4 cut(s) 233, 285, 337, 725
MaeI CTAG 2 cut(s) 96, 201
MaeIII GTNAC 2 cut(s) 203, 665
MalI GATC 2 cut(s) 444, 656
MboI GATC 2 cut(s) 442, 654
MboII GAAGA 2 cut(s) 287, 671
MluCI AATT 5 cut(s) 44, 171, 191, 481, 601
MlyI GAGTC 2 cut(s) 481, 685
MnlI CCTC 3 cut(s) 96, 457, 483
Mph1103I ATGCAT 3 cut(s) 226, 352, 618
MseI TTAA 3 cut(s) 281, 687, 710
MslI CAYNNNNRTG 1 cut(s) 724
MspCI CTTAAG 1 cut(s) 280
MspI CCGG 2 cut(s) 112, 355
MspR9I CCNGG 3 cut(s) 112, 356, 524
Mva1269I GAATGC 1 cut(s) 616
MvaI CCWGG 1 cut(s) 524
NciI CCSGG 2 cut(s) 112, 356
NdeII GATC 2 cut(s) 442, 654
NlaIII CATG 7 cut(s) 302, 330, 354, 562, 597, 609, 727
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 203
NsiI ATGCAT 3 cut(s) 226, 352, 618
NspI RCATGY 2 cut(s) 354, 597
NspV TTCGAA 1 cut(s) 703
PaeI GCATGC 2 cut(s) 354, 597
PagI TCATGA 1 cut(s) 298
PctI GAATGC 1 cut(s) 616
PfeI GAWTC 3 cut(s) 302, 579, 633
PfoI TCCNGGA 1 cut(s) 522
PkrI GCNGC 2 cut(s) 252, 467
PleI GAGTC 2 cut(s) 481, 684
PpsI GAGTC 2 cut(s) 481, 684
Psp6I CCWGG 1 cut(s) 522
PspGI CCWGG 1 cut(s) 522
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 4 cut(s) 83, 108, 242, 456
RsaI GTAC 3 cut(s) 16, 290, 415
RsaNI GTAC 3 cut(s) 15, 289, 414
RseI CAYNNNNRTG 1 cut(s) 724
SaqAI TTAA 3 cut(s) 281, 687, 710
SatI GCNGC 2 cut(s) 251, 466
Sau3AI GATC 2 cut(s) 442, 654
Sau96I GGNCC 4 cut(s) 83, 108, 242, 456
SchI GAGTC 2 cut(s) 481, 685
ScrFI CCNGG 3 cut(s) 112, 356, 524
SetI ASST 8 cut(s) 16, 161, 409, 419, 475, 516, 531, 569
SfaNI GCATC 4 cut(s) 233, 285, 337, 725
SfuI TTCGAA 1 cut(s) 703
SinI GGWCC 2 cut(s) 242, 456
SmiMI CAYNNNNRTG 1 cut(s) 724
SmlI CTYRAG 3 cut(s) 160, 280, 498
SmoI CTYRAG 3 cut(s) 160, 280, 498
SphI GCATGC 2 cut(s) 354, 597
Sse9I AATT 5 cut(s) 44, 171, 191, 481, 601
SsiI CCGC 2 cut(s) 250, 372
SspMI CTAG 2 cut(s) 96, 201
StyD4I CCNGG 3 cut(s) 110, 354, 522
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 3 cut(s) 262, 288, 293
TaqI TCGA 3 cut(s) 48, 305, 703
TasI AATT 5 cut(s) 44, 171, 191, 481, 601
TatI WGTACW 1 cut(s) 288
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 3 cut(s) 302, 579, 633
Tru1I TTAA 3 cut(s) 281, 687, 710
Tru9I TTAA 3 cut(s) 281, 687, 710
TscAI CASTG 1 cut(s) 651
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 465
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 3 cut(s) 287, 315, 594
TspRI CASTG 1 cut(s) 651
Vha464I CTTAAG 1 cut(s) 280
VpaK11BI GGWCC 2 cut(s) 242, 456
XapI RAATTY 2 cut(s) 44, 601
XceI RCATGY 2 cut(s) 354, 597
XspI CTAG 2 cut(s) 96, 201
Zsp2I ATGCAT 3 cut(s) 226, 352, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.