Rorug07G0183500

negative regulation of ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000166
Physical Location & Seq
Reverse (-)
15303121 .. 15305751
2631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0183500.1

Sequence Viewer

Length: 471 bp
ATGAGACTATGCATTCCCCAAATCTGCCTCCGCACCTTCTTACACAATGACGCCAAAATTCACCGGACTCTCGAAGCCAGTCTTATACAACGCAAACTCTCCTCAATCGTTCTTCGCTTCAGCCTCGTCTCTCCCTCATTTTTTTTTTCACTTCAGTCTCCTTCGATTGCTCTTGTTCAGATCATTGCTGGTGATCCAGAATGTGTTAGTGAGACATGGATGAGTAATGTATATAGTTTGGGGATGGTGATTTGGGAGATGGTGACTGGTGAGGCAGCCTACTCCGCATGTTCACCGATCCAAGTAGCAGTTGGGATAGTTGCATGTGGCCTCAGACCTGAGATTCTAAAGGACTGTCCACAAATGCTAAGATCCTTGATGACCAAGTGCTGGAACAACTCCCCCTCAAAGCGTCCTCAGTTCTCTGAAATTCTATCACTATTGCTGCGGACCAGAAACAATGTAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.53

Weight (kDa)

9.15

Isoelectric Point (pI)

70.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 66 - 147 2.3e-15 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 390
AciI CCGC 3 cut(s) 31, 285, 448
AclWI GGATC 3 cut(s) 188, 292, 366
AcsI RAATTY 2 cut(s) 57, 429
AcuI CTGAAG 2 cut(s) 103, 137
AcyI GRCGYC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 390
Alw26I GTCTC 3 cut(s) 133, 162, 206
AlwI GGATC 3 cut(s) 188, 292, 366
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 2 cut(s) 275, 445
ApoI RAATTY 2 cut(s) 57, 429
AspS9I GGNCC 1 cut(s) 450
AsuHPI GGTGA 6 cut(s) 53, 203, 259, 274, 281, 285
AvaII GGWCC 1 cut(s) 450
BbvI GCAGC 2 cut(s) 287, 432
BccI CCATC 2 cut(s) 238, 253
BcoDI GTCTC 3 cut(s) 133, 162, 206
BisI GCNGC 2 cut(s) 276, 446
BlsI GCNGC 2 cut(s) 277, 447
Bme18I GGWCC 1 cut(s) 450
BmgT120I GGNCC 1 cut(s) 450
BsaHI GRCGYC 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse1I ACTGG 2 cut(s) 78, 271
Bse3DI GCAATG 1 cut(s) 183
BseGI GGATG 2 cut(s) 225, 249
BseLI CCNNNNNNNGG 1 cut(s) 390
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 3 cut(s) 330, 346, 431
BseNI ACTGG 2 cut(s) 78, 271
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 2 cut(s) 287, 432
BshFI GGCC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 390
BsmAI GTCTC 3 cut(s) 133, 162, 206
BsmBI CGTCTC 1 cut(s) 133
BsmI GAATGC 1 cut(s) 12
BsnI GGCC 1 cut(s) 330
Bsp143I GATC 4 cut(s) 180, 193, 297, 371
BspACI CCGC 3 cut(s) 31, 285, 448
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 3 cut(s) 331, 345, 430
BspPI GGATC 3 cut(s) 188, 292, 366
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 2 cut(s) 78, 271
BssMI GATC 4 cut(s) 180, 193, 297, 371
BssNI GRCGYC 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 356
BstACI GRCGYC 1 cut(s) 51
BstDEI CTNAG 4 cut(s) 332, 339, 368, 417
BstF5I GGATG 2 cut(s) 225, 249
BstKTI GATC 4 cut(s) 183, 196, 300, 374
BstMAI GTCTC 3 cut(s) 133, 162, 206
BstMBI GATC 4 cut(s) 180, 193, 297, 371
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNSI RCATGY 2 cut(s) 291, 327
BstV1I GCAGC 2 cut(s) 287, 432
BstX2I RGATCY 1 cut(s) 371
BstYI RGATCY 1 cut(s) 371
BsuRI GGCC 1 cut(s) 330
BtsCI GGATG 2 cut(s) 225, 249
Cfr13I GGNCC 1 cut(s) 450
CseI GACGC 2 cut(s) 59, 401
CviAII CATG 3 cut(s) 216, 288, 324
CviJI RGCY 4 cut(s) 77, 123, 278, 330
CviKI_1 RGCY 4 cut(s) 77, 123, 278, 330
DdeI CTNAG 4 cut(s) 332, 339, 368, 417
DpnI GATC 4 cut(s) 182, 195, 299, 373
DpnII GATC 4 cut(s) 180, 193, 297, 371
Eco47I GGWCC 1 cut(s) 450
Eco57I CTGAAG 2 cut(s) 103, 137
EcoT22I ATGCAT 1 cut(s) 14
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 3 cut(s) 219, 291, 327
FaiI YATR 7 cut(s) 10, 86, 217, 232, 234, 289, 325
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FatI CATG 3 cut(s) 215, 287, 323
Fnu4HI GCNGC 2 cut(s) 276, 446
FokI GGATG 2 cut(s) 232, 256
Fsp4HI GCNGC 2 cut(s) 276, 446
GluI GCNGC 2 cut(s) 276, 446
HaeIII GGCC 1 cut(s) 330
HapII CCGG 1 cut(s) 64
HgaI GACGC 2 cut(s) 59, 401
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 3 cut(s) 219, 291, 327
HinfI GANTC 2 cut(s) 67, 343
HpaII CCGG 1 cut(s) 64
HphI GGTGA 6 cut(s) 53, 203, 259, 274, 281, 285
Hpy166II GTNNAC 2 cut(s) 293, 359
Hpy188I TCNGA 3 cut(s) 180, 335, 427
Hpy188III TCNNGA 2 cut(s) 71, 197
Hpy8I GTNNAC 2 cut(s) 293, 359
HpyAV CCTTC 2 cut(s) 46, 171
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 2 cut(s) 12, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 4 cut(s) 332, 339, 368, 417
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 3 cut(s) 219, 291, 327
Kzo9I GATC 4 cut(s) 180, 193, 297, 371
LpnPI CCDG 8 cut(s) 77, 91, 174, 210, 252, 351, 376, 466
Lsp1109I GCAGC 2 cut(s) 287, 432
MaeIII GTNAC 1 cut(s) 262
MalI GATC 4 cut(s) 182, 195, 299, 373
MboI GATC 4 cut(s) 180, 193, 297, 371
MboII GAAGA 1 cut(s) 104
MflI RGATCY 1 cut(s) 371
MluCI AATT 2 cut(s) 57, 429
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 8 cut(s) 38, 112, 134, 145, 265, 341, 415, 426
Mph1103I ATGCAT 1 cut(s) 14
MspI CCGG 1 cut(s) 64
Mva1269I GAATGC 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeII GATC 4 cut(s) 180, 193, 297, 371
NlaIII CATG 3 cut(s) 219, 291, 327
NmuCI GTSAC 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 14
NspI RCATGY 2 cut(s) 291, 327
PctI GAATGC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 343
PflMI CCANNNNNTGG 1 cut(s) 390
PkrI GCNGC 2 cut(s) 277, 447
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 450
PsuI RGATCY 1 cut(s) 371
SatI GCNGC 2 cut(s) 276, 446
Sau3AI GATC 4 cut(s) 180, 193, 297, 371
Sau96I GGNCC 1 cut(s) 450
SchI GAGTC 1 cut(s) 61
SetI ASST 3 cut(s) 38, 340, 470
SinI GGWCC 1 cut(s) 450
Sse9I AATT 2 cut(s) 57, 429
SsiI CCGC 3 cut(s) 31, 285, 448
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 2 cut(s) 72, 164
TasI AATT 2 cut(s) 57, 429
TfiI GAWTC 1 cut(s) 343
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 2 cut(s) 275, 445
Tsp45I GTSAC 1 cut(s) 262
Van91I CCANNNNNTGG 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 450
XapI RAATTY 2 cut(s) 57, 429
XceI RCATGY 2 cut(s) 291, 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 308
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.