RchiOBHm_Chr3g0465011

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000166
Physical Location & Seq
Reverse (-)
11928452 .. 11930967
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43119

Sequence Viewer

Length: 2319 bp
ATGAAGTGCAGAGCTTTTTCAGTCTCCTTTCTATGTCTTCTCTGTTTTGCAACTGCAAAAACCCAAAGTAGTCTAAAGAGAGGATCTTCTCTTTCAGTGGAGGATGATTCAGATTTCCTAACCTCACCAGACAAGTCTTTCACGTGTGGGTTTCATGGGGTTGGCACAAATGCCTACTGGTTCTCAATTTGGTTCACAAGCTCAAAAGACAGGACCATTGTTTGGATGGCCAACAGGGACAAGCCAGTCAATGGCTTGGGGTCTAGAGTCTATCTGAGCCGAGATGGCTCGATGGTCTTGACTGATGTAGATGGAGCCATCATCTGGAAGAGCAGCACCAACTCGAGTACCAATACTGTTGCTGAAAGAGCTGAGCTTTTGGATTCTGGCAACCTTGTTCTGAAGGACCCTAGTGGTAAAATTCTATGGCAAAGCTTTGATTTTCCTACTGATACTTTGCTCCCAAACCAGCACTTTAGAAAGAGCAATAAGTTGATTTCTAATTTGGGAAGAGGGGATTTTGGTACTGGCTATTTTAGTTTCTATTTTGATAATGATAATGTTTTGAAGTTGATGTATGATGGTCCTGATATTTCTAGCTTGTACTGGCCTGACCTTGATTATAGTGTGTTTCAGAATGGTAGAAATGCTTATAATAGTAGTAGAGTTGCAGTTTTAGATGAACTTGGTAGTTTTTCGTCTAGTGATCAACTGCAATTTAGTGCTTTTGACATGGGTTTGAGAGTGAAAAGGAGGTTGACAATGGATTATGATGGAAATCTAAGACTTTATAGTCTTAATAGCTCAACAGGATTGTGGATAATCACATGGCAAGCTATGGTGGAGCTTTGTAAGGTTCATGGGATATGTGGGCAAAATGGGATTTGTATATATACACCAGGGCCAAAGTGTTCATGTCCTCCTGGCTATGAAGTAGCTGATGCAAGTAACTTGAACTTGGGCTGCAAGCCTAAGTTCAAGCGTACATGCTCGAAGTCCCAAGAAGAGAAATTTGTGCGGATTCCGCAAGTAGATTTCTATGGATTTGATCTCAATTATAGTGTAGCAATTTCAATTGATGATTGCAGACAGCTCTGCTTGGGGGATTGCCGGTGTGAGGCATTTAGCTATAGGCTAAATGGGGAAGGGTGGTGTTACACCAAAAGTGCTCTTTTCAATGGCTACAAGTCTCCAGATTTTGTGGGCAGTATATACTTGAGAATGCCTGTGAGTGTGGAAGCACCATTACTAGTCACCAGGCTCAATGCCCTGGATTCATGTAAGAGTACTGAGGCCCAAAAAATGGGTTCTGCTTCAATGTATGACAATACTAGTAAAAGGGTAAGATGGGCATATCTGTATTGGTTTGCTACTGCAGCTGGTGCAGTTGAAATTCTCTTCATACTTTCAGGTTGGTGGTTACTTTTCAGAAGACATGGCGCTAGAGCTCCTATCGAAGATGGATATCATGTGATTTCGAGTCAATTTAGAATGTTTCGGTACGCTGAGCTCAAGAAGGCGACCAAAACATTCAAGGAAGAGCTGGGAAGAGGGGCTTCTGGGGCTGTGTTTAAGGGTGTTCTGGAAGATGAGAGAGTGGTTGCTGTGAAGAAATTGGCAGACATTTATCAAGGTGAAGATGTGTTTTGGGCGGAAGTAAGCATAATTGGTAAAATCAATCACATGAACCTAGTGAGAATATGGGGATTCTGTTCAGAAGATAAACACAGACTCCTGGTGTTTAAAGTTGCAATAGGGGTTGCAAAGGGTTTAGCCTATCTTCACCATGAGTGTCTAGAATGGGTTATACATTGTGATGTGAAGCCTGAAAATATACTCTTAGACAGTAACTTTGAGGCAAAGATTGCAGATTTCGGGCTAGCAAAGTTGACTCAGAGAGGCAGCCAGAGCTCTATGTTCTCAAAAGTTCGAGGAACAAAAGGGTATATGGCCCCGGAGTGGGCTCTAAACCTTCCAATCACTGCGAAAGTGGATGTTTACAGTTACGGAGTGGTGATTCTAGAGTTGGTGAAGGGCATTCGACTTTCGAATTGGGCATTGGAGGATAGCGAGGAGCAAGAGGCAGAGCTGACTAGGTGTGTGAGGATAGTGAAAAGGAAGATTCAATGTGGAGAAGATTCATGGATGGAGGATATGTTGGATCCAAGACTAAAAGGGCAGTTCAGCAGGAAACAAGCAGAAAAGATGGTTGAGATTGGTATTTCTTGTGTGGAAGAAGATAGGAGCAGAAGACCAACAATGGATTCAGTATTACAAGATTTGCTAGAATGTGAAGGTGAGTCCTATGTGCATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

772

Amino Acids

87.1

Weight (kDa)

7.09

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 72 - 163 2e-25 D-mannose binding lectin
S_locus_glycop PF00954 236 - 311 6.8e-10 S-locus glycoprotein domain
PAN_2 PF08276 330 - 386 5.7e-06 PAN-like domain
PK_Tyr_Ser-Thr PF07714 511 - 582 1.1e-09 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 512 - 583 1.2e-09 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 581 - 761 3.5e-20 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 584 - 760 1.5e-31 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 654
AasI GACNNNNNNGTC 2 cut(s) 245, 792
AccB7I CCANNNNNTGG 4 cut(s) 222, 251, 324, 1303
AciI CCGC 3 cut(s) 1018, 1025, 1652
AclWI GGATC 3 cut(s) 91, 2156, 2169
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 3 cut(s) 420, 1010, 1392
AcuI CTGAAG 1 cut(s) 422
AcvI CACGTG 1 cut(s) 144
AfaI GTAC 6 cut(s) 349, 526, 605, 985, 1288, 1502
AfiI CCNNNNNNNGG 7 cut(s) 222, 251, 324, 1117, 1303, 1959, 1960
AflIII ACRYGT 1 cut(s) 143
AgsI TTSAA 9 cut(s) 568, 955, 979, 1074, 1177, 1317, 1391, 1534, 2126
AhlI ACTAGT 2 cut(s) 1249, 1331
AjnI CCWGG 5 cut(s) 898, 922, 1256, 1269, 1734
AjuI GAANNNNNNNTTGG 4 cut(s) 2042, 2074, 2248, 2280
Alw21I GWGCWC 4 cut(s) 1171, 1450, 1512, 1913
Alw26I GTCTC 2 cut(s) 28, 1194
AlwI GGATC 3 cut(s) 91, 2156, 2169
Ama87I CYCGRG 1 cut(s) 343
AoxI GGCC 5 cut(s) 228, 608, 902, 1293, 1950
ApeKI GCWGC 4 cut(s) 333, 963, 1376, 1902
ApoI RAATTY 3 cut(s) 420, 1010, 1392
ArsI GACNNNNNNTTYG 2 cut(s) 1835, 1867
AspLEI GCGC 1 cut(s) 1442
AspS9I GGNCC 6 cut(s) 213, 406, 584, 902, 1294, 1951
AsuC2I CCSGG 1 cut(s) 1955
AsuHPI GGTGA 7 cut(s) 117, 1246, 1646, 1775, 2026, 2041, 2309
AsuII TTCGAA 1 cut(s) 2048
AsuNHI GCTAGC 1 cut(s) 1879
AvaI CYCGRG 1 cut(s) 343
AvaII GGWCC 3 cut(s) 213, 406, 584
BaeI ACNNNNGTAYC 2 cut(s) 331, 364
BalI TGGCCA 1 cut(s) 230
BamHI GGATCC 1 cut(s) 2161
BanII GRGCYC 4 cut(s) 1450, 1512, 1913, 1966
BarI GAAGNNNNNNTAC 2 cut(s) 1230, 1262
BbrPI CACGTG 1 cut(s) 144
BbsI GAAGAC 3 cut(s) 29, 1438, 2257
Bbv12I GWGCWC 4 cut(s) 1171, 1450, 1512, 1913
BbvI GCAGC 4 cut(s) 345, 950, 1388, 1914
BciT130I CCWGG 5 cut(s) 900, 924, 1258, 1271, 1736
BclI TGATCA 1 cut(s) 706
BcnI CCSGG 1 cut(s) 1955
BcoDI GTCTC 2 cut(s) 28, 1194
BcuI ACTAGT 2 cut(s) 1249, 1331
BfmI CTRYAG 2 cut(s) 1129, 1374
BfoI RGCGCY 1 cut(s) 1443
BglI GCCNNNNNGGC 1 cut(s) 285
BisI GCNGC 4 cut(s) 334, 964, 1377, 1903
BlpI GCTNAGC 2 cut(s) 372, 1506
BlsI GCNGC 4 cut(s) 335, 965, 1378, 1904
BmcAI AGTACT 1 cut(s) 1288
Bme1390I CCNGG 6 cut(s) 900, 924, 1258, 1271, 1736, 1955
Bme18I GGWCC 3 cut(s) 213, 406, 584
BmeT110I CYCGRG 1 cut(s) 343
BmgT120I GGNCC 6 cut(s) 213, 406, 584, 902, 1294, 1951
BmiI GGNNCC 4 cut(s) 316, 408, 1953, 2163
BmrFI CCNGG 6 cut(s) 900, 924, 1258, 1271, 1736, 1955
BmsI GCATC 1 cut(s) 931
BmtI GCTAGC 1 cut(s) 1883
BpiI GAAGAC 3 cut(s) 29, 1438, 2257
BpmI CTGGAG 1 cut(s) 1176
Bpu1102I GCTNAGC 2 cut(s) 372, 1506
Bpu14I TTCGAA 1 cut(s) 2048
BpuEI CTTGAG 2 cut(s) 1237, 1496
BpuMI CCSGG 1 cut(s) 1955
BsaAI YACGTR 1 cut(s) 144
BsaBI GATNNNNATC 2 cut(s) 777, 1464
BsaJI CCNNGG 3 cut(s) 899, 1269, 1953
BsaXI ACNNNNNCTCC 4 cut(s) 1716, 1746, 2141, 2171
Bsc4I CCNNNNNNNGG 7 cut(s) 222, 251, 324, 1117, 1303, 1959, 1960
Bse118I RCCGGY 1 cut(s) 1110
Bse1I ACTGG 4 cut(s) 182, 245, 532, 611
Bse8I GATNNNNATC 2 cut(s) 777, 1464
BseBI CCWGG 5 cut(s) 900, 924, 1258, 1271, 1736
BseDI CCNNGG 3 cut(s) 899, 1269, 1953
BseGI GGATG 4 cut(s) 109, 231, 1999, 2151
BseJI GATNNNNATC 2 cut(s) 777, 1464
BseLI CCNNNNNNNGG 7 cut(s) 222, 251, 324, 1117, 1303, 1959, 1960
BseMII CTCAG 5 cut(s) 266, 363, 1281, 1497, 1907
BseNI ACTGG 4 cut(s) 182, 245, 532, 611
BseRI GAGGAG 1 cut(s) 2087
BseXI GCAGC 4 cut(s) 345, 950, 1388, 1914
BseYI CCCAGC 1 cut(s) 1543
BsgI GTGCAG 2 cut(s) 28, 1404
BshFI GGCC 5 cut(s) 230, 610, 904, 1295, 1952
BsiHKAI GWGCWC 4 cut(s) 1171, 1450, 1512, 1913
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 2 cut(s) 1111, 1955
BslFI GGGAC 2 cut(s) 251, 982
BslI CCNNNNNNNGG 7 cut(s) 222, 251, 324, 1117, 1303, 1959, 1960
BsmAI GTCTC 2 cut(s) 28, 1194
BsmFI GGGAC 2 cut(s) 251, 982
BsmI GAATGC 2 cut(s) 1227, 2037
BsnI GGCC 5 cut(s) 230, 610, 904, 1295, 1952
BsoBI CYCGRG 1 cut(s) 343
Bsp119I TTCGAA 1 cut(s) 2048
Bsp1286I GDGCHC 5 cut(s) 1171, 1450, 1512, 1913, 1966
Bsp143I GATC 4 cut(s) 83, 706, 1048, 2161
Bsp1720I GCTNAGC 2 cut(s) 372, 1506
BspACI CCGC 3 cut(s) 1018, 1025, 1652
BspANI GGCC 5 cut(s) 230, 610, 904, 1295, 1952
BspCNI CTCAG 5 cut(s) 267, 364, 1282, 1498, 1906
BspLI GGNNCC 4 cut(s) 316, 408, 1953, 2163
BspMAI CTGCAG 1 cut(s) 1378
BspOI GCTAGC 1 cut(s) 1883
BspPI GGATC 3 cut(s) 91, 2156, 2169
BspQI GCTCTTC 2 cut(s) 323, 1533
BspT104I TTCGAA 1 cut(s) 2048
BsrFI RCCGGY 1 cut(s) 1110
BsrI ACTGG 4 cut(s) 182, 245, 532, 611
BssAI RCCGGY 1 cut(s) 1110
BssECI CCNNGG 3 cut(s) 899, 1269, 1953
BssMI GATC 4 cut(s) 83, 706, 1048, 2161
Bst2UI CCWGG 5 cut(s) 900, 924, 1258, 1271, 1736
Bst4CI ACNGT 3 cut(s) 358, 1847, 2003
Bst6I CTCTTC 6 cut(s) 323, 505, 999, 1403, 1533, 1543
BstAPI GCANNNNNTGC 2 cut(s) 1382, 1865
BstBAI YACGTR 1 cut(s) 144
BstBI TTCGAA 1 cut(s) 2048
BstC8I GCNNGC 3 cut(s) 834, 968, 1881
BstDEI CTNAG 8 cut(s) 275, 372, 782, 972, 1290, 1506, 1840, 1893
BstF5I GGATG 4 cut(s) 109, 231, 1999, 2151
BstH2I RGCGCY 1 cut(s) 1443
BstHHI GCGC 1 cut(s) 1442
BstKTI GATC 4 cut(s) 86, 709, 1051, 2164
BstMAI GTCTC 2 cut(s) 28, 1194
BstMBI GATC 4 cut(s) 83, 706, 1048, 2161
BstMWI GCNNNNNNNGC 8 cut(s) 285, 368, 1024, 1376, 1382, 1562, 1865, 1908
BstNI CCWGG 5 cut(s) 900, 924, 1258, 1271, 1736
BstNSI RCATGY 1 cut(s) 990
BstSCI CCNGG 6 cut(s) 898, 922, 1256, 1269, 1734, 1953
BstSFI CTRYAG 2 cut(s) 1129, 1374
BstV1I GCAGC 4 cut(s) 345, 950, 1388, 1914
BstV2I GAAGAC 3 cut(s) 29, 1438, 2257
BstX2I RGATCY 2 cut(s) 83, 2161
BstYI RGATCY 2 cut(s) 83, 2161
BsuRI GGCC 5 cut(s) 230, 610, 904, 1295, 1952
BtsCI GGATG 4 cut(s) 109, 231, 1999, 2151
BtsI GCAGTG 1 cut(s) 1980
BtsIMutI CAGTG 2 cut(s) 102, 1980
Cac8I GCNNGC 3 cut(s) 834, 968, 1881
CfoI GCGC 1 cut(s) 1442
Cfr10I RCCGGY 1 cut(s) 1110
Cfr13I GGNCC 6 cut(s) 213, 406, 584, 902, 1294, 1951
Csp6I GTAC 6 cut(s) 348, 525, 604, 984, 1287, 1501
CviQI GTAC 6 cut(s) 348, 525, 604, 984, 1287, 1501
DdeI CTNAG 8 cut(s) 275, 372, 782, 972, 1290, 1506, 1840, 1893
DpnI GATC 4 cut(s) 85, 708, 1050, 2163
DpnII GATC 4 cut(s) 83, 706, 1048, 2161
DraI TTTAAA 1 cut(s) 1744
DrdI GACNNNNNNGTC 2 cut(s) 245, 792
DseDI GACNNNNNNGTC 2 cut(s) 245, 792
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 6 cut(s) 323, 505, 999, 1403, 1533, 1543
EarI CTCTTC 6 cut(s) 323, 505, 999, 1403, 1533, 1543
EciI GGCGGA 1 cut(s) 1667
Ecl136II GAGCTC 3 cut(s) 1448, 1510, 1911
Eco24I GRGCYC 4 cut(s) 1450, 1512, 1913, 1966
Eco32I GATATC 1 cut(s) 1466
Eco47I GGWCC 3 cut(s) 213, 406, 584
Eco53kI GAGCTC 3 cut(s) 1448, 1510, 1911
Eco57I CTGAAG 1 cut(s) 422
Eco72I CACGTG 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 343
EcoICRI GAGCTC 3 cut(s) 1448, 1510, 1911
EcoO109I RGGNCCY 1 cut(s) 406
EcoRII CCWGG 5 cut(s) 898, 922, 1256, 1269, 1734
EcoRV GATATC 1 cut(s) 1466
EcoT38I GRGCYC 4 cut(s) 1450, 1512, 1913, 1966
FalI AAGNNNNNCTT 2 cut(s) 1540, 1572
FaqI GGGAC 2 cut(s) 251, 982
FbaI TGATCA 1 cut(s) 706
Fnu4HI GCNGC 4 cut(s) 334, 964, 1377, 1903
FokI GGATG 4 cut(s) 116, 238, 2006, 2158
FriOI GRGCYC 4 cut(s) 1450, 1512, 1913, 1966
Fsp4HI GCNGC 4 cut(s) 334, 964, 1377, 1903
GlaI GCGC 1 cut(s) 1441
GluI GCNGC 4 cut(s) 334, 964, 1377, 1903
GsaI CCCAGC 1 cut(s) 1547
GsuI CTGGAG 1 cut(s) 1176
HaeII RGCGCY 1 cut(s) 1443
HaeIII GGCC 5 cut(s) 230, 610, 904, 1295, 1952
HapII CCGG 2 cut(s) 1111, 1955
HhaI GCGC 1 cut(s) 1442
Hin6I GCGC 1 cut(s) 1440
HinP1I GCGC 1 cut(s) 1440
HincII GTYRAC 2 cut(s) 759, 1890
HindII GTYRAC 2 cut(s) 759, 1890
HindIII AAGCTT 1 cut(s) 433
HpaII CCGG 2 cut(s) 1111, 1955
HphI GGTGA 7 cut(s) 117, 1246, 1646, 1775, 2026, 2041, 2309
Hpy166II GTNNAC 4 cut(s) 195, 759, 1890, 1999
Hpy188I TCNGA 7 cut(s) 112, 276, 402, 636, 1430, 1717, 1896
Hpy188III TCNNGA 9 cut(s) 264, 298, 325, 587, 1193, 1513, 1583, 1796, 2021
Hpy8I GTNNAC 4 cut(s) 195, 759, 1890, 1999
HpyAV CCTTC 6 cut(s) 397, 1139, 1510, 1982, 2026, 2288
HpyCH4III ACNGT 3 cut(s) 358, 1847, 2003
HpyCH4IV ACGT 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 8 cut(s) 285, 368, 1024, 1376, 1382, 1562, 1865, 1908
HpyF3I CTNAG 8 cut(s) 275, 372, 782, 972, 1290, 1506, 1840, 1893
HpySE526I ACGT 1 cut(s) 143
HspAI GCGC 1 cut(s) 1440
Ksp22I TGATCA 1 cut(s) 706
Kzo9I GATC 4 cut(s) 83, 706, 1048, 2161
LguI GCTCTTC 2 cut(s) 323, 1533
LmnI GCTCC 6 cut(s) 314, 465, 844, 1453, 2074, 2244
Lsp1109I GCAGC 4 cut(s) 345, 950, 1388, 1914
LweI GCATC 1 cut(s) 931
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 6 cut(s) 947, 1154, 1252, 1419, 1847, 2003
MalI GATC 4 cut(s) 85, 708, 1050, 2163
MboI GATC 4 cut(s) 83, 706, 1048, 2161
MfeI CAATTG 1 cut(s) 1074
MflI RGATCY 2 cut(s) 83, 2161
MhlI GDGCHC 5 cut(s) 1171, 1450, 1512, 1913, 1966
MlsI TGGCCA 1 cut(s) 230
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 5 cut(s) 276, 1489, 1725, 1885, 2309
MmeI TCCRAC 1 cut(s) 2139
Mox20I TGGCCA 1 cut(s) 230
MscI TGGCCA 1 cut(s) 230
MseI TTAA 3 cut(s) 798, 1572, 1743
MslI CAYNNNNRTG 1 cut(s) 1815
Msp20I TGGCCA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 1379
MspI CCGG 2 cut(s) 1111, 1955
MspR9I CCNGG 6 cut(s) 900, 924, 1258, 1271, 1736, 1955
MunI CAATTG 1 cut(s) 1074
Mva1269I GAATGC 2 cut(s) 1227, 2037
MvaI CCWGG 5 cut(s) 900, 924, 1258, 1271, 1736
MwoI GCNNNNNNNGC 8 cut(s) 285, 368, 1024, 1376, 1382, 1562, 1865, 1908
NciI CCSGG 1 cut(s) 1955
NdeII GATC 4 cut(s) 83, 706, 1048, 2161
NheI GCTAGC 1 cut(s) 1879
NlaIV GGNNCC 4 cut(s) 316, 408, 1953, 2163
NmeAIII GCCGAG 1 cut(s) 305
NmuCI GTSAC 1 cut(s) 1252
NspI RCATGY 1 cut(s) 990
NspV TTCGAA 1 cut(s) 2048
PaeR7I CTCGAG 1 cut(s) 343
PciSI GCTCTTC 2 cut(s) 323, 1533
PctI GAATGC 2 cut(s) 1227, 2037
PfeI GAWTC 9 cut(s) 107, 383, 1021, 1274, 1707, 2017, 2122, 2138, 2264
PflMI CCANNNNNTGG 4 cut(s) 222, 251, 324, 1303
PkrI GCNGC 4 cut(s) 335, 965, 1378, 1904
PleI GAGTC 5 cut(s) 275, 1488, 1725, 1885, 2308
PmaCI CACGTG 1 cut(s) 144
PmlI CACGTG 1 cut(s) 144
PpsI GAGTC 5 cut(s) 275, 1488, 1725, 1885, 2308
Ppu21I YACGTR 1 cut(s) 144
PpuMI RGGWCCY 1 cut(s) 406
PsiI TTATAA 1 cut(s) 654
Psp124BI GAGCTC 3 cut(s) 1450, 1512, 1913
Psp5II RGGWCCY 1 cut(s) 406
Psp6I CCWGG 5 cut(s) 898, 922, 1256, 1269, 1734
PspCI CACGTG 1 cut(s) 144
PspFI CCCAGC 1 cut(s) 1543
PspGI CCWGG 5 cut(s) 898, 922, 1256, 1269, 1734
PspN4I GGNNCC 4 cut(s) 316, 408, 1953, 2163
PspPI GGNCC 6 cut(s) 213, 406, 584, 902, 1294, 1951
PspPPI RGGWCCY 1 cut(s) 406
PspXI VCTCGAGB 1 cut(s) 343
PstI CTGCAG 1 cut(s) 1378
PsuI RGATCY 2 cut(s) 83, 2161
PvuII CAGCTG 1 cut(s) 1379
RsaI GTAC 6 cut(s) 349, 526, 605, 985, 1288, 1502
RsaNI GTAC 6 cut(s) 348, 525, 604, 984, 1287, 1501
RseI CAYNNNNRTG 1 cut(s) 1815
SacI GAGCTC 3 cut(s) 1450, 1512, 1913
SapI GCTCTTC 2 cut(s) 323, 1533
SaqAI TTAA 3 cut(s) 798, 1572, 1743
SatI GCNGC 4 cut(s) 334, 964, 1377, 1903
Sau3AI GATC 4 cut(s) 83, 706, 1048, 2161
Sau96I GGNCC 6 cut(s) 213, 406, 584, 902, 1294, 1951
ScaI AGTACT 1 cut(s) 1288
SchI GAGTC 5 cut(s) 276, 1489, 1725, 1885, 2309
ScrFI CCNGG 6 cut(s) 900, 924, 1258, 1271, 1736, 1955
SduI GDGCHC 5 cut(s) 1171, 1450, 1512, 1913, 1966
SfaNI GCATC 1 cut(s) 931
SfcI CTRYAG 2 cut(s) 1129, 1374
Sfr274I CTCGAG 1 cut(s) 343
SfuI TTCGAA 1 cut(s) 2048
SinI GGWCC 3 cut(s) 213, 406, 584
SlaI CTCGAG 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 1815
SmlI CTYRAG 3 cut(s) 343, 1216, 1511
SmoI CTYRAG 3 cut(s) 343, 1216, 1511
SpeI ACTAGT 2 cut(s) 1249, 1331
SsiI CCGC 3 cut(s) 1018, 1025, 1652
SstI GAGCTC 3 cut(s) 1450, 1512, 1913
StyD4I CCNGG 6 cut(s) 898, 922, 1256, 1269, 1734, 1953
TaaI ACNGT 3 cut(s) 358, 1847, 2003
TaiI ACGT 1 cut(s) 146
TaqI TCGA 8 cut(s) 290, 344, 992, 1455, 1478, 1930, 2041, 2048
TatI WGTACW 2 cut(s) 603, 1286
TfiI GAWTC 9 cut(s) 107, 383, 1021, 1274, 1707, 2017, 2122, 2138, 2264
Tru1I TTAA 3 cut(s) 798, 1572, 1743
Tru9I TTAA 3 cut(s) 798, 1572, 1743
TscAI CASTG 2 cut(s) 102, 1987
TseFI GTSAC 1 cut(s) 1252
TseI GCWGC 4 cut(s) 333, 963, 1376, 1902
Tsp45I GTSAC 1 cut(s) 1252
TspGWI ACGGA 1 cut(s) 2022
TspRI CASTG 2 cut(s) 102, 1987
Van91I CCANNNNNTGG 4 cut(s) 222, 251, 324, 1303
VpaK11BI GGWCC 3 cut(s) 213, 406, 584
XapI RAATTY 3 cut(s) 420, 1010, 1392
XbaI TCTAGA 3 cut(s) 263, 1795, 2020
XceI RCATGY 1 cut(s) 990
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XhoI CTCGAG 1 cut(s) 343
ZrmI AGTACT 1 cut(s) 1288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.