Rmu_co8301123.1_g000001

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8301123.1
OG0000166
Physical Location & Seq
Forward (+)
60 .. 895
836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8301123.1_g000001.1.cds

Sequence Viewer

Length: 836 bp
atgtatggcactaccggtaaaagggtgagatgggtatatctgtatagttttgcttttgcagttggtgctgttgagtttctttttatagtatcaggttggtggctacttttcagaagacatggtagtgctgtaactcctgtggaagacggatatcgtgtgatttcaagtcaatttagaaggtttcgcttcaatgagctcaagagtgcaaccaaaaacttccaggaagagctgggaagaggggcttcagggtctgtctataagggtgttctggaggatgaaagagtagtggctgtcaagaaattggcagatattcatcaaggggaagatgtgttttgggcagaagtaagcacaattggcaaaatcaatcacatgaatctagtgagaatttggggattttgctcagaagatgagcacagactactggtttctgagtttgttgaaaatgggtctttggacaagcacttgttcacctcaaatttacttggatggaaagagaggtataaagttgcactagggatagcaaagggtttagcctatcttcaccatgaatgtctggaatgggttatacattgtgacgtgaagcctgaaaatatactcctagacagtgattttgagccaaagattgcagattttgggctagcaaagctaactcagagagataggctcatttcaatgttctctcagattcgaggaacaaaaggttatatggccccggagtgggctatgaaccttcgaattactgcaaaggttgatgtttacagttatggggtgttgatcctggagatagtgaagggcattcgacttacaagttggttgctggaggatattgaagagga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

278

Amino Acids

31.98

Weight (kDa)

6.73

Isoelectric Point (pI)

27.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 769
AcsI RAATTY 2 cut(s) 384, 475
AcuI CTGAAG 1 cut(s) 228
AfiI CCNNNNNNNGG 3 cut(s) 21, 717, 718
AgeI ACCGGT 1 cut(s) 14
AgsI TTSAA 5 cut(s) 165, 190, 440, 672, 830
AjiI CACGTC 1 cut(s) 577
AjnI CCWGG 2 cut(s) 219, 777
AluBI AGCT 3 cut(s) 196, 229, 646
AluI AGCT 3 cut(s) 196, 229, 646
Alw21I GWGCWC 2 cut(s) 198, 414
AlwI GGATC 1 cut(s) 769
AlwNI CAGNNNCTG 1 cut(s) 251
AoxI GGCC 1 cut(s) 708
ApoI RAATTY 2 cut(s) 384, 475
ArsI GACNNNNNNTTYG 2 cut(s) 593, 625
AsiGI ACCGGT 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 709
AsuC2I CCSGG 1 cut(s) 713
AsuHPI GGTGA 3 cut(s) 37, 460, 533
AsuII TTCGAA 1 cut(s) 733
AsuNHI GCTAGC 1 cut(s) 637
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 2 cut(s) 121, 150
Bbv12I GWGCWC 2 cut(s) 198, 414
BccI CCATC 2 cut(s) 24, 480
BciT130I CCWGG 2 cut(s) 221, 779
BcnI CCSGG 1 cut(s) 713
BfaI CTAG 4 cut(s) 377, 512, 599, 638
Bme1390I CCNGG 3 cut(s) 221, 713, 779
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 1 cut(s) 709
BmiI GGNNCC 1 cut(s) 711
BmrFI CCNGG 3 cut(s) 221, 713, 779
BmtI GCTAGC 1 cut(s) 641
BpiI GAAGAC 2 cut(s) 121, 150
BplI GAGNNNNNCTC 2 cut(s) 648, 680
BpmI CTGGAG 2 cut(s) 290, 800
Bpu14I TTCGAA 1 cut(s) 733
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 713
BsaBI GATNNNNATC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 711
BsaWI WCCGGW 1 cut(s) 14
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 717, 718
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 426
Bse8I GATNNNNATC 1 cut(s) 312
BseBI CCWGG 2 cut(s) 221, 779
BseDI CCNNGG 1 cut(s) 711
BseGI GGATG 2 cut(s) 280, 491
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 3 cut(s) 21, 717, 718
BseMII CTCAG 4 cut(s) 414, 420, 665, 695
BseNI ACTGG 1 cut(s) 426
BseYI CCCAGC 1 cut(s) 229
BshFI GGCC 1 cut(s) 710
BshTI ACCGGT 1 cut(s) 14
BsiHKAI GWGCWC 2 cut(s) 198, 414
BsiSI CCGG 2 cut(s) 15, 713
BslI CCNNNNNNNGG 3 cut(s) 21, 717, 718
BsmI GAATGC 1 cut(s) 795
BsnI GGCC 1 cut(s) 710
Bsp119I TTCGAA 1 cut(s) 733
Bsp1286I GDGCHC 2 cut(s) 198, 414
Bsp143I GATC 1 cut(s) 774
BspANI GGCC 1 cut(s) 710
BspCNI CTCAG 4 cut(s) 413, 421, 664, 694
BspLI GGNNCC 1 cut(s) 711
BspOI GCTAGC 1 cut(s) 641
BspPI GGATC 1 cut(s) 769
BspQI GCTCTTC 1 cut(s) 219
BspT104I TTCGAA 1 cut(s) 733
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 1 cut(s) 426
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 711
BssMI GATC 1 cut(s) 774
Bst2UI CCWGG 2 cut(s) 221, 779
Bst4CI ACNGT 2 cut(s) 605, 761
Bst6I CTCTTC 3 cut(s) 219, 229, 825
BstAPI GCANNNNNTGC 1 cut(s) 65
BstBI TTCGAA 1 cut(s) 733
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 4 cut(s) 400, 429, 651, 681
BstF5I GGATG 2 cut(s) 280, 491
BstKTI GATC 1 cut(s) 777
BstMBI GATC 1 cut(s) 774
BstMWI GCNNNNNNNGC 3 cut(s) 65, 354, 643
BstNI CCWGG 2 cut(s) 221, 779
BstSCI CCNGG 3 cut(s) 219, 711, 777
BstV2I GAAGAC 2 cut(s) 121, 150
BsuRI GGCC 1 cut(s) 710
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 2 cut(s) 280, 491
BtsIMutI CAGTG 1 cut(s) 610
Cac8I GCNNGC 1 cut(s) 639
CaiI CAGNNNCTG 1 cut(s) 251
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 709
CspAI ACCGGT 1 cut(s) 14
CviAII CATG 3 cut(s) 119, 370, 545
DdeI CTNAG 4 cut(s) 400, 429, 651, 681
DpnI GATC 1 cut(s) 776
DpnII GATC 1 cut(s) 774
Eam1104I CTCTTC 3 cut(s) 219, 229, 825
EarI CTCTTC 3 cut(s) 219, 229, 825
Ecl136II GAGCTC 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 198
Eco32I GATATC 1 cut(s) 152
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 228
EcoICRI GAGCTC 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 219, 777
EcoRV GATATC 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 3 cut(s) 122, 373, 548
FalI AAGNNNNNCTT 2 cut(s) 226, 258
FatI CATG 3 cut(s) 118, 369, 544
FokI GGATG 2 cut(s) 287, 498
FriOI GRGCYC 1 cut(s) 198
FspBI CTAG 4 cut(s) 377, 512, 599, 638
GsaI CCCAGC 1 cut(s) 233
GsuI CTGGAG 2 cut(s) 290, 800
HaeIII GGCC 1 cut(s) 710
HapII CCGG 2 cut(s) 15, 713
Hin1II CATG 3 cut(s) 122, 373, 548
HinfI GANTC 2 cut(s) 373, 685
HpaII CCGG 2 cut(s) 15, 713
HphI GGTGA 3 cut(s) 37, 460, 533
Hpy166II GTNNAC 2 cut(s) 468, 757
Hpy188I TCNGA 5 cut(s) 113, 403, 430, 654, 684
Hpy188III TCNNGA 4 cut(s) 199, 269, 295, 554
Hpy8I GTNNAC 2 cut(s) 468, 757
HpyAV CCTTC 3 cut(s) 171, 740, 784
HpyCH4III ACNGT 2 cut(s) 605, 761
HpyCH4IV ACGT 1 cut(s) 576
HpyCH4V TGCA 5 cut(s) 59, 206, 509, 626, 743
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 354, 643
HpyF3I CTNAG 4 cut(s) 400, 429, 651, 681
HpySE526I ACGT 1 cut(s) 576
Hsp92II CATG 3 cut(s) 122, 373, 548
Kzo9I GATC 1 cut(s) 774
LguI GCTCTTC 1 cut(s) 219
MaeI CTAG 4 cut(s) 377, 512, 599, 638
MaeII ACGT 1 cut(s) 576
MaeIII GTNAC 2 cut(s) 130, 572
MalI GATC 1 cut(s) 776
MboI GATC 1 cut(s) 774
MboII GAAGA 7 cut(s) 126, 155, 236, 246, 335, 416, 530
MfeI CAATTG 1 cut(s) 351
MhlI GDGCHC 2 cut(s) 198, 414
MluCI AATT 6 cut(s) 170, 299, 351, 384, 475, 735
MnlI CCTC 7 cut(s) 230, 265, 481, 489, 683, 814, 826
MslI CAYNNNNRTG 2 cut(s) 123, 671
MspI CCGG 2 cut(s) 15, 713
MspR9I CCNGG 3 cut(s) 221, 713, 779
MunI CAATTG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 795
MvaI CCWGG 2 cut(s) 221, 779
MwoI GCNNNNNNNGC 3 cut(s) 65, 354, 643
NciI CCSGG 1 cut(s) 713
NdeII GATC 1 cut(s) 774
NheI GCTAGC 1 cut(s) 637
NlaIII CATG 3 cut(s) 122, 373, 548
NlaIV GGNNCC 1 cut(s) 711
NmuCI GTSAC 1 cut(s) 572
NspV TTCGAA 1 cut(s) 733
PciSI GCTCTTC 1 cut(s) 219
PctI GAATGC 1 cut(s) 795
PfeI GAWTC 2 cut(s) 373, 685
PfoI TCCNGGA 2 cut(s) 219, 777
PinAI ACCGGT 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 2 cut(s) 219, 777
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 2 cut(s) 219, 777
PspN4I GGNNCC 1 cut(s) 711
PspPI GGNCC 1 cut(s) 709
PstNI CAGNNNCTG 1 cut(s) 251
RseI CAYNNNNRTG 2 cut(s) 123, 671
SacI GAGCTC 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 774
Sau96I GGNCC 1 cut(s) 709
ScrFI CCNGG 3 cut(s) 221, 713, 779
SduI GDGCHC 2 cut(s) 198, 414
SfuI TTCGAA 1 cut(s) 733
SmiMI CAYNNNNRTG 2 cut(s) 123, 671
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 6 cut(s) 170, 299, 351, 384, 475, 735
SspMI CTAG 4 cut(s) 377, 512, 599, 638
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 3 cut(s) 219, 711, 777
TaaI ACNGT 2 cut(s) 605, 761
TaiI ACGT 1 cut(s) 579
TaqI TCGA 3 cut(s) 688, 733, 799
TasI AATT 6 cut(s) 170, 299, 351, 384, 475, 735
TfiI GAWTC 2 cut(s) 373, 685
TscAI CASTG 1 cut(s) 610
TseFI GTSAC 1 cut(s) 572
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 5 cut(s) 291, 302, 386, 561, 740
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 1 cut(s) 610
XapI RAATTY 2 cut(s) 384, 475
XspI CTAG 4 cut(s) 377, 512, 599, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.