Rw3G011280

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000166
Physical Location & Seq
Reverse (-)
10930548 .. 10934199
3652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G011280.1

Sequence Viewer

Length: 2430 bp
ATGTTAAACCCAGAAACCATACCTTTAAACACCATCTGTTACAGAGCTTTTTCAGTCTCCTTTCTATGTCTTCTCTGTTTTGCAACTGCAAAAACCCTAGGTAGTCTAAAGAGAGGATCTTCTCTTTCAGTGGAGGATGATTCAGATTTCCTAACCTCACCAGACAAGTCTTTCACGTGTGGGTTTCATGGGGTTGGCACAAATGCCTACTGGTTCTCAATTTGGTTCACAAGCTCAAAAGACAGGACCATTGTTTGGATGGCCAACAGGGACAAGCCAGTCAATGGCTTGGGGTCTAGAGTCTATCTGAGCCGAGATGGCTCGATGGTCTTGACTGATGTAGATGGAGCCATCATCTGGAAGAGCAGCACCAACTCGAGTACCAATACTGTTGCTGAAAGAGCTGAGCTTTTGGATTCTGGCAACCTTGTTCTGAAGGACCCTAGTGGTAAAATTCTATGGCAAAGCTTTGATTTTCCTACTGGTACTTTGCTCCCAAACCAGCACTTTAGAAAGAGCAATAAGTTGATTTCTAATTTGGGAAGAGGGGATTTTGGTACTGGCTATTTTAGTTTCTATTTTGATAATGATAATGTTTTGAAGTTGATGTATGATGGTCCTGATATTTCTAGCTTGTACTGGCCTGACCTTGATTATAGTGTGTTTCAGAATGGTAGAAATGCTTATAATAGTAGTAGAGTTGCTGTTTTAGATGAACTTGGTAGTTTTTCGTCTAGTGATGAACTGCAATTTAGTGCTTTTGACATGGGTTTGAGAGTGAAAAGGAGGTTGACAATGGATTATGATGGAAATCTAAGACTTTATAGTCTTAATAGCTCAACAGGATTGTGGATAATCACATGGCAAGCTATGGTGGAGCTTTGTAAGGTTCATGGGATATGTGGGCAAAATGGGATTTGTATATATACACCAGGGCCAAAGTGTTCATGTCCTCCTGGCTATGAAGTAGCTGATGCAAGTAACTTGAACTTGGGCTGCAAGCCTAAGTTCAAGCGTACATGCTCGAAGTCCCAAGAAGAGAAATTTGTGCGGATTCCGCAAGTAGATTTCTATGGATTTGATCTCAATTATAGTGTAGCAATTTCAATTGATGATTGCAGACAGCTCTGCTTGGGGGATTGCCGGTGTGAGGCATTTAGCTATAGGCTAAATGGGGAAGGGAGGTGTTACACCAAAAGTGCTCTTTTCAATGGCTACAAGTCTCCAGATTTTGTGGGCAGTATATACTTGAGAATGCCTGTGAGTGTGGAAGCACCATTACTAGTCACCAGGCTCAATGCCCTGGATTCATGTAAGAGTACTGAGGCCCAAAAAATGGGTTCTGCTTCAATGTATGACAATACTAGTAAAAGGGTAAGATGGGCATATCTGTATTGGTTTGCTACTGCAGCTGGTGCAGTTGAAATTCTCTTCATACTTTCAGGTTGGTGGTTACTTTTCAGAAGACATGGCGCTAGAGCTCCTATCGAAGATGGATATCATGTGATTTCGAGTCAATTTAGAATGTTTCGGTACGCTGAGCTCAAGAAGGCGACCAAAACATTCAAGGAAGAGCTGGGAAGAGGGGCTTCTGGGGCTGTGTTTAAGGGTGTTCTGGAAGATGAGAGAGTGGTTGCTGTGAAGAAATTGGCAGACATTTATCAAGGTGAAGATGTGTTTTGGGCGGAAGTAAGAGTAAGCATAATTGGTAAAATCAATCACATGAACCTAGTGAGAATATGGGGATTCTGTTCAGAAGATAAACACAGACTCCTGGTGTCTGAGTTTATTGAAAATGGATCACTAGACAAGCACTTGTTCCCCCCAAATTTTCTTGGATGGCAAGAAAGGTTTAAAGTTGCAATAGGGGTTGCAAAGGGTTTAGCCTATCTTCACCATGAGTGTCTAGAATGGGTTATACATTGTGATGTGAAGCCTGAAAATATACTCTTAGACAGTAACTTTGAGGCAAAGATTGCAGATTTCGGGCTAGCAAAGTTGACTCAGAGAGGCAGCCAGAGCTCTATGTTCTCTAAAGTTCGAGGAACAAAAGGGTATATGGCCCCGGAGTGGGCTCTAAACCTTCCAATCACTGCGAAAGTGGATGTTTACAGTTACGGAGTGGTGATTCTAGAGTTGGTGAAGGGCATTCGACTTTCGAATTGGGCATTGGAGGATAGCGAGGAGCAAGAGGCAGAGCTGACTAGGTGTGTGAGGATAGTGAAAAGGAAGATTCAATGTGGAGAAGATTCATGGATGGAGGATATGTTGGATCCAAGACTAAAAGGGCAGTTCAGCAGGAAACAAGCAGAAAAGATGGTTGAGATTGGTATTTCTTGTGTGGAAGAAGATAGGAGCAGAAGACCGACAATGGATTCAGTATTACAAGATTTGCTAGAATGTGAAGATGAGTCCTATGTGCATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

809

Amino Acids

91.37

Weight (kDa)

6.51

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 83 - 174 4.1e-24 D-mannose binding lectin
S_locus_glycop PF00954 245 - 322 5.9e-10 S-locus glycoprotein domain
PAN_2 PF08276 341 - 399 2.4e-06 PAN-like domain
PAN_1 PF00024 348 - 400 3.8e-06 PAN domain
PK_Tyr_Ser-Thr PF07714 522 - 798 2.5e-39 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 523 - 797 3e-49 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 687
AasI GACNNNNNNGTC 2 cut(s) 278, 825
AccB7I CCANNNNNTGG 4 cut(s) 255, 284, 357, 1336
AciI CCGC 3 cut(s) 1051, 1058, 1685
AclWI GGATC 4 cut(s) 124, 1807, 2267, 2280
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 4 cut(s) 453, 1043, 1425, 1828
AcuI CTGAAG 1 cut(s) 455
AcvI CACGTG 1 cut(s) 177
AfaI GTAC 7 cut(s) 382, 487, 559, 638, 1018, 1321, 1535
AfiI CCNNNNNNNGG 7 cut(s) 255, 284, 357, 1150, 1336, 2070, 2071
AflIII ACRYGT 1 cut(s) 176
AhlI ACTAGT 2 cut(s) 1282, 1364
AjnI CCWGG 5 cut(s) 931, 955, 1289, 1302, 1773
AjuI GAANNNNNNNTTGG 2 cut(s) 2153, 2185
Alw21I GWGCWC 4 cut(s) 1204, 1483, 1545, 2024
Alw26I GTCTC 2 cut(s) 61, 1227
AlwI GGATC 4 cut(s) 124, 1807, 2267, 2280
Ama87I CYCGRG 1 cut(s) 376
AoxI GGCC 5 cut(s) 261, 641, 935, 1326, 2061
ApeKI GCWGC 4 cut(s) 366, 996, 1409, 2013
ApoI RAATTY 4 cut(s) 453, 1043, 1425, 1828
ArsI GACNNNNNNTTYG 2 cut(s) 1946, 1978
AspA2I CCTAGG 1 cut(s) 97
AspLEI GCGC 1 cut(s) 1475
AspS9I GGNCC 6 cut(s) 246, 439, 617, 935, 1327, 2062
AsuC2I CCSGG 1 cut(s) 2066
AsuHPI GGTGA 6 cut(s) 150, 1279, 1679, 1886, 2137, 2152
AsuII TTCGAA 1 cut(s) 2159
AsuNHI GCTAGC 1 cut(s) 1990
AvaI CYCGRG 1 cut(s) 376
AvaII GGWCC 3 cut(s) 246, 439, 617
AvrII CCTAGG 1 cut(s) 97
BaeI ACNNNNGTAYC 2 cut(s) 364, 397
BalI TGGCCA 1 cut(s) 263
BamHI GGATCC 1 cut(s) 2272
BanII GRGCYC 4 cut(s) 1483, 1545, 2024, 2077
BarI GAAGNNNNNNTAC 2 cut(s) 1263, 1295
BbrPI CACGTG 1 cut(s) 177
BbsI GAAGAC 3 cut(s) 62, 1471, 2368
Bbv12I GWGCWC 4 cut(s) 1204, 1483, 1545, 2024
BbvI GCAGC 4 cut(s) 378, 983, 1421, 2025
BciT130I CCWGG 5 cut(s) 933, 957, 1291, 1304, 1775
BcnI CCSGG 1 cut(s) 2066
BcoDI GTCTC 2 cut(s) 61, 1227
BcuI ACTAGT 2 cut(s) 1282, 1364
BfmI CTRYAG 2 cut(s) 1162, 1407
BfoI RGCGCY 1 cut(s) 1476
BglI GCCNNNNNGGC 1 cut(s) 318
BisI GCNGC 4 cut(s) 367, 997, 1410, 2014
BlnI CCTAGG 1 cut(s) 97
BlpI GCTNAGC 2 cut(s) 405, 1539
BlsI GCNGC 4 cut(s) 368, 998, 1411, 2015
BmcAI AGTACT 1 cut(s) 1321
Bme1390I CCNGG 6 cut(s) 933, 957, 1291, 1304, 1775, 2066
Bme18I GGWCC 3 cut(s) 246, 439, 617
BmeT110I CYCGRG 1 cut(s) 376
BmgT120I GGNCC 6 cut(s) 246, 439, 617, 935, 1327, 2062
BmiI GGNNCC 4 cut(s) 349, 441, 2064, 2274
BmrFI CCNGG 6 cut(s) 933, 957, 1291, 1304, 1775, 2066
BmsI GCATC 1 cut(s) 964
BmtI GCTAGC 1 cut(s) 1994
BpiI GAAGAC 3 cut(s) 62, 1471, 2368
BpmI CTGGAG 1 cut(s) 1209
Bpu1102I GCTNAGC 2 cut(s) 405, 1539
Bpu14I TTCGAA 1 cut(s) 2159
BpuEI CTTGAG 2 cut(s) 1270, 1529
BpuMI CCSGG 1 cut(s) 2066
BsaAI YACGTR 1 cut(s) 177
BsaBI GATNNNNATC 2 cut(s) 810, 1497
BsaJI CCNNGG 4 cut(s) 97, 932, 1302, 2064
BsaXI ACNNNNNCTCC 4 cut(s) 1755, 1785, 2252, 2282
Bsc4I CCNNNNNNNGG 7 cut(s) 255, 284, 357, 1150, 1336, 2070, 2071
Bse118I RCCGGY 1 cut(s) 1143
Bse1I ACTGG 5 cut(s) 215, 278, 487, 565, 644
Bse8I GATNNNNATC 2 cut(s) 810, 1497
BseBI CCWGG 5 cut(s) 933, 957, 1291, 1304, 1775
BseDI CCNNGG 4 cut(s) 97, 932, 1302, 2064
BseGI GGATG 5 cut(s) 142, 264, 1844, 2110, 2262
BseJI GATNNNNATC 2 cut(s) 810, 1497
BseLI CCNNNNNNNGG 7 cut(s) 255, 284, 357, 1150, 1336, 2070, 2071
BseMII CTCAG 6 cut(s) 299, 396, 1314, 1530, 1773, 2018
BseNI ACTGG 5 cut(s) 215, 278, 487, 565, 644
BseRI GAGGAG 1 cut(s) 2198
BseXI GCAGC 4 cut(s) 378, 983, 1421, 2025
BseYI CCCAGC 1 cut(s) 1576
BsgI GTGCAG 1 cut(s) 1437
BshFI GGCC 5 cut(s) 263, 643, 937, 1328, 2063
BsiHKAI GWGCWC 4 cut(s) 1204, 1483, 1545, 2024
BsiHKCI CYCGRG 1 cut(s) 376
BsiSI CCGG 2 cut(s) 1144, 2066
BslFI GGGAC 2 cut(s) 284, 1015
BslI CCNNNNNNNGG 7 cut(s) 255, 284, 357, 1150, 1336, 2070, 2071
BsmAI GTCTC 2 cut(s) 61, 1227
BsmFI GGGAC 2 cut(s) 284, 1015
BsmI GAATGC 2 cut(s) 1260, 2148
BsnI GGCC 5 cut(s) 263, 643, 937, 1328, 2063
BsoBI CYCGRG 1 cut(s) 376
Bsp119I TTCGAA 1 cut(s) 2159
Bsp1286I GDGCHC 5 cut(s) 1204, 1483, 1545, 2024, 2077
Bsp143I GATC 4 cut(s) 116, 1081, 1799, 2272
Bsp1720I GCTNAGC 2 cut(s) 405, 1539
BspACI CCGC 3 cut(s) 1051, 1058, 1685
BspANI GGCC 5 cut(s) 263, 643, 937, 1328, 2063
BspCNI CTCAG 6 cut(s) 300, 397, 1315, 1531, 1774, 2017
BspLI GGNNCC 4 cut(s) 349, 441, 2064, 2274
BspMAI CTGCAG 1 cut(s) 1411
BspOI GCTAGC 1 cut(s) 1994
BspPI GGATC 4 cut(s) 124, 1807, 2267, 2280
BspQI GCTCTTC 2 cut(s) 356, 1566
BspT104I TTCGAA 1 cut(s) 2159
BsrFI RCCGGY 1 cut(s) 1143
BsrI ACTGG 5 cut(s) 215, 278, 487, 565, 644
BssAI RCCGGY 1 cut(s) 1143
BssECI CCNNGG 4 cut(s) 97, 932, 1302, 2064
BssMI GATC 4 cut(s) 116, 1081, 1799, 2272
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 5 cut(s) 933, 957, 1291, 1304, 1775
Bst4CI ACNGT 3 cut(s) 391, 1958, 2114
Bst6I CTCTTC 6 cut(s) 356, 538, 1032, 1436, 1566, 1576
BstAPI GCANNNNNTGC 2 cut(s) 1415, 1976
BstBAI YACGTR 1 cut(s) 177
BstBI TTCGAA 1 cut(s) 2159
BstC8I GCNNGC 3 cut(s) 867, 1001, 1992
BstDEI CTNAG 9 cut(s) 308, 405, 815, 1005, 1323, 1539, 1782, 1951, 2004
BstF5I GGATG 5 cut(s) 142, 264, 1844, 2110, 2262
BstH2I RGCGCY 1 cut(s) 1476
BstHHI GCGC 1 cut(s) 1475
BstKTI GATC 4 cut(s) 119, 1084, 1802, 2275
BstMAI GTCTC 2 cut(s) 61, 1227
BstMBI GATC 4 cut(s) 116, 1081, 1799, 2272
BstMWI GCNNNNNNNGC 8 cut(s) 318, 401, 1057, 1409, 1415, 1595, 1976, 2019
BstNI CCWGG 5 cut(s) 933, 957, 1291, 1304, 1775
BstNSI RCATGY 1 cut(s) 1023
BstSCI CCNGG 6 cut(s) 931, 955, 1289, 1302, 1773, 2064
BstSFI CTRYAG 2 cut(s) 1162, 1407
BstV1I GCAGC 4 cut(s) 378, 983, 1421, 2025
BstV2I GAAGAC 3 cut(s) 62, 1471, 2368
BstX2I RGATCY 2 cut(s) 116, 2272
BstYI RGATCY 2 cut(s) 116, 2272
BsuRI GGCC 5 cut(s) 263, 643, 937, 1328, 2063
BtsCI GGATG 5 cut(s) 142, 264, 1844, 2110, 2262
BtsI GCAGTG 1 cut(s) 2091
BtsIMutI CAGTG 2 cut(s) 135, 2091
Cac8I GCNNGC 3 cut(s) 867, 1001, 1992
CfoI GCGC 1 cut(s) 1475
Cfr10I RCCGGY 1 cut(s) 1143
Cfr13I GGNCC 6 cut(s) 246, 439, 617, 935, 1327, 2062
Csp6I GTAC 7 cut(s) 381, 486, 558, 637, 1017, 1320, 1534
CviQI GTAC 7 cut(s) 381, 486, 558, 637, 1017, 1320, 1534
DdeI CTNAG 9 cut(s) 308, 405, 815, 1005, 1323, 1539, 1782, 1951, 2004
DpnI GATC 4 cut(s) 118, 1083, 1801, 2274
DpnII GATC 4 cut(s) 116, 1081, 1799, 2272
DraI TTTAAA 2 cut(s) 27, 1855
DrdI GACNNNNNNGTC 2 cut(s) 278, 825
DseDI GACNNNNNNGTC 2 cut(s) 278, 825
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 6 cut(s) 356, 538, 1032, 1436, 1566, 1576
EarI CTCTTC 6 cut(s) 356, 538, 1032, 1436, 1566, 1576
EciI GGCGGA 1 cut(s) 1700
Ecl136II GAGCTC 3 cut(s) 1481, 1543, 2022
Eco130I CCWWGG 1 cut(s) 97
Eco24I GRGCYC 4 cut(s) 1483, 1545, 2024, 2077
Eco32I GATATC 1 cut(s) 1499
Eco47I GGWCC 3 cut(s) 246, 439, 617
Eco53kI GAGCTC 3 cut(s) 1481, 1543, 2022
Eco57I CTGAAG 1 cut(s) 455
Eco72I CACGTG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 376
EcoICRI GAGCTC 3 cut(s) 1481, 1543, 2022
EcoO109I RGGNCCY 1 cut(s) 439
EcoRII CCWGG 5 cut(s) 931, 955, 1289, 1302, 1773
EcoRV GATATC 1 cut(s) 1499
EcoT14I CCWWGG 1 cut(s) 97
EcoT38I GRGCYC 4 cut(s) 1483, 1545, 2024, 2077
ErhI CCWWGG 1 cut(s) 97
FalI AAGNNNNNCTT 2 cut(s) 1573, 1605
FaqI GGGAC 2 cut(s) 284, 1015
Fnu4HI GCNGC 4 cut(s) 367, 997, 1410, 2014
FokI GGATG 5 cut(s) 149, 271, 1851, 2117, 2269
FriOI GRGCYC 4 cut(s) 1483, 1545, 2024, 2077
Fsp4HI GCNGC 4 cut(s) 367, 997, 1410, 2014
GlaI GCGC 1 cut(s) 1474
GluI GCNGC 4 cut(s) 367, 997, 1410, 2014
GsaI CCCAGC 1 cut(s) 1580
GsuI CTGGAG 1 cut(s) 1209
HaeII RGCGCY 1 cut(s) 1476
HaeIII GGCC 5 cut(s) 263, 643, 937, 1328, 2063
HapII CCGG 2 cut(s) 1144, 2066
HhaI GCGC 1 cut(s) 1475
Hin6I GCGC 1 cut(s) 1473
HinP1I GCGC 1 cut(s) 1473
HincII GTYRAC 2 cut(s) 792, 2001
HindII GTYRAC 2 cut(s) 792, 2001
HindIII AAGCTT 1 cut(s) 466
HpaII CCGG 2 cut(s) 1144, 2066
HphI GGTGA 6 cut(s) 150, 1279, 1679, 1886, 2137, 2152
Hpy166II GTNNAC 4 cut(s) 228, 792, 2001, 2110
Hpy188I TCNGA 8 cut(s) 145, 309, 435, 669, 1463, 1756, 1783, 2007
Hpy188III TCNNGA 9 cut(s) 297, 331, 358, 620, 1226, 1546, 1616, 1907, 2132
Hpy8I GTNNAC 4 cut(s) 228, 792, 2001, 2110
HpyAV CCTTC 5 cut(s) 430, 1172, 1543, 2093, 2137
HpyCH4III ACNGT 3 cut(s) 391, 1958, 2114
HpyCH4IV ACGT 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 8 cut(s) 318, 401, 1057, 1409, 1415, 1595, 1976, 2019
HpyF3I CTNAG 9 cut(s) 308, 405, 815, 1005, 1323, 1539, 1782, 1951, 2004
HpySE526I ACGT 1 cut(s) 176
HspAI GCGC 1 cut(s) 1473
Kzo9I GATC 4 cut(s) 116, 1081, 1799, 2272
LguI GCTCTTC 2 cut(s) 356, 1566
LmnI GCTCC 6 cut(s) 347, 498, 877, 1486, 2185, 2355
Lsp1109I GCAGC 4 cut(s) 378, 983, 1421, 2025
LweI GCATC 1 cut(s) 964
MaeII ACGT 1 cut(s) 176
MaeIII GTNAC 7 cut(s) 38, 980, 1187, 1285, 1452, 1958, 2114
MalI GATC 4 cut(s) 118, 1083, 1801, 2274
MboI GATC 4 cut(s) 116, 1081, 1799, 2272
MfeI CAATTG 1 cut(s) 1107
MflI RGATCY 2 cut(s) 116, 2272
MhlI GDGCHC 5 cut(s) 1204, 1483, 1545, 2024, 2077
MlsI TGGCCA 1 cut(s) 263
MluNI TGGCCA 1 cut(s) 263
MlyI GAGTC 5 cut(s) 309, 1522, 1764, 1996, 2420
MmeI TCCRAC 1 cut(s) 2250
Mox20I TGGCCA 1 cut(s) 263
MscI TGGCCA 1 cut(s) 263
MseI TTAA 5 cut(s) 5, 26, 831, 1605, 1854
MslI CAYNNNNRTG 1 cut(s) 1926
Msp20I TGGCCA 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 1412
MspI CCGG 2 cut(s) 1144, 2066
MspR9I CCNGG 6 cut(s) 933, 957, 1291, 1304, 1775, 2066
MunI CAATTG 1 cut(s) 1107
Mva1269I GAATGC 2 cut(s) 1260, 2148
MvaI CCWGG 5 cut(s) 933, 957, 1291, 1304, 1775
MwoI GCNNNNNNNGC 8 cut(s) 318, 401, 1057, 1409, 1415, 1595, 1976, 2019
NciI CCSGG 1 cut(s) 2066
NdeII GATC 4 cut(s) 116, 1081, 1799, 2272
NheI GCTAGC 1 cut(s) 1990
NlaIV GGNNCC 4 cut(s) 349, 441, 2064, 2274
NmeAIII GCCGAG 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 1285
NspI RCATGY 1 cut(s) 1023
NspV TTCGAA 1 cut(s) 2159
PaeR7I CTCGAG 1 cut(s) 376
PciSI GCTCTTC 2 cut(s) 356, 1566
PctI GAATGC 2 cut(s) 1260, 2148
PfeI GAWTC 9 cut(s) 140, 416, 1054, 1307, 1746, 2128, 2233, 2249, 2375
PflMI CCANNNNNTGG 4 cut(s) 255, 284, 357, 1336
PkrI GCNGC 4 cut(s) 368, 998, 1411, 2015
PleI GAGTC 5 cut(s) 308, 1521, 1764, 1996, 2419
PmaCI CACGTG 1 cut(s) 177
PmlI CACGTG 1 cut(s) 177
PpsI GAGTC 5 cut(s) 308, 1521, 1764, 1996, 2419
Ppu21I YACGTR 1 cut(s) 177
PpuMI RGGWCCY 1 cut(s) 439
PsiI TTATAA 1 cut(s) 687
Psp124BI GAGCTC 3 cut(s) 1483, 1545, 2024
Psp5II RGGWCCY 1 cut(s) 439
Psp6I CCWGG 5 cut(s) 931, 955, 1289, 1302, 1773
PspCI CACGTG 1 cut(s) 177
PspFI CCCAGC 1 cut(s) 1576
PspGI CCWGG 5 cut(s) 931, 955, 1289, 1302, 1773
PspN4I GGNNCC 4 cut(s) 349, 441, 2064, 2274
PspPI GGNCC 6 cut(s) 246, 439, 617, 935, 1327, 2062
PspPPI RGGWCCY 1 cut(s) 439
PspXI VCTCGAGB 1 cut(s) 376
PstI CTGCAG 1 cut(s) 1411
PsuI RGATCY 2 cut(s) 116, 2272
PvuII CAGCTG 1 cut(s) 1412
RsaI GTAC 7 cut(s) 382, 487, 559, 638, 1018, 1321, 1535
RsaNI GTAC 7 cut(s) 381, 486, 558, 637, 1017, 1320, 1534
RseI CAYNNNNRTG 1 cut(s) 1926
SacI GAGCTC 3 cut(s) 1483, 1545, 2024
SapI GCTCTTC 2 cut(s) 356, 1566
SaqAI TTAA 5 cut(s) 5, 26, 831, 1605, 1854
SatI GCNGC 4 cut(s) 367, 997, 1410, 2014
Sau3AI GATC 4 cut(s) 116, 1081, 1799, 2272
Sau96I GGNCC 6 cut(s) 246, 439, 617, 935, 1327, 2062
ScaI AGTACT 1 cut(s) 1321
SchI GAGTC 5 cut(s) 309, 1522, 1764, 1996, 2420
ScrFI CCNGG 6 cut(s) 933, 957, 1291, 1304, 1775, 2066
SduI GDGCHC 5 cut(s) 1204, 1483, 1545, 2024, 2077
SfaNI GCATC 1 cut(s) 964
SfcI CTRYAG 2 cut(s) 1162, 1407
Sfr274I CTCGAG 1 cut(s) 376
SfuI TTCGAA 1 cut(s) 2159
SinI GGWCC 3 cut(s) 246, 439, 617
SlaI CTCGAG 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 1926
SmlI CTYRAG 3 cut(s) 376, 1249, 1544
SmoI CTYRAG 3 cut(s) 376, 1249, 1544
SpeI ACTAGT 2 cut(s) 1282, 1364
SsiI CCGC 3 cut(s) 1051, 1058, 1685
SstI GAGCTC 3 cut(s) 1483, 1545, 2024
StyD4I CCNGG 6 cut(s) 931, 955, 1289, 1302, 1773, 2064
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 3 cut(s) 391, 1958, 2114
TaiI ACGT 1 cut(s) 179
TaqI TCGA 8 cut(s) 323, 377, 1025, 1488, 1511, 2041, 2152, 2159
TaqII GACCGA 1 cut(s) 2380
TatI WGTACW 2 cut(s) 636, 1319
TfiI GAWTC 9 cut(s) 140, 416, 1054, 1307, 1746, 2128, 2233, 2249, 2375
Tru1I TTAA 5 cut(s) 5, 26, 831, 1605, 1854
Tru9I TTAA 5 cut(s) 5, 26, 831, 1605, 1854
TscAI CASTG 2 cut(s) 135, 2098
TseFI GTSAC 1 cut(s) 1285
TseI GCWGC 4 cut(s) 366, 996, 1409, 2013
Tsp45I GTSAC 1 cut(s) 1285
TspGWI ACGGA 1 cut(s) 2133
TspRI CASTG 2 cut(s) 135, 2098
Van91I CCANNNNNTGG 4 cut(s) 255, 284, 357, 1336
VpaK11BI GGWCC 3 cut(s) 246, 439, 617
XapI RAATTY 4 cut(s) 453, 1043, 1425, 1828
XbaI TCTAGA 3 cut(s) 296, 1906, 2131
XceI RCATGY 1 cut(s) 1023
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XhoI CTCGAG 1 cut(s) 376
XmaJI CCTAGG 1 cut(s) 97
ZrmI AGTACT 1 cut(s) 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.