Rh3BG137800

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000166
Physical Location & Seq
Reverse (-)
11687092 .. 11688061
970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG137800.1

Sequence Viewer

Length: 879 bp
ATGAGAAGCCAAGGTACATACTTATCTGGATTCTATAACTTCAAGTTCGATGATAACAGTATCTTGTTTCTCATCTACAATGGCCCTATACTTTCTAGTGTTTATTGGCCCCAGATTGTTTCAACTGTTTTTGAAAGTGGTAGAAATCCTTACAACAGCTCTAGAGTGGCAATTTTAGATGTGGCTGGACAATTTATATCTAGTGACAATATGCAGTTCTATGCATCTGACTATGGGGTTGGTCCAAAGCGGCGTTTAACAATGGATTATGATGGCATCTTAAGATTGTACAGTCTTGATGAATCAGCCGGGAATTGGAAACTGTCATGGTTGCCTGATGGTGTTGATGCATGCCTGGTTCAGGGCTTATGTGGTGAATATGGTATTTGCACATACAAACCACTACCTACTTGTACTTGCCCTTCAGGGTTTTCCCTAAACGTTCCCTCAGACTGGTCCAAAGGCTGCTCACCTCCCTTCAATTTGACTCAACTCACTCAAGATACAAGCAAGCTAGACTTCCTGGAGCTCCCTTACACAGATTACTATGGATATGACTTGGAAACCTATCAACTTGGAATTTCTTTTGAAGCATGCAGGAATTCATGCCTAGTGGATTCTAGATGCTTGGGATTCGGATATGCGCTGGACGGATTAGGACAATGTTACCCTAAGAGTCTTCTGCTTAATGGATACCGTATGTCAAATGTTAAGAGCATCTTGTATGTTAAGATTCCAAAAGATTTTCTGACCCCTGGTGCAGTCCAGAGCAAACTAGAAGCACATGATTTGAGTTGTTCCGCAGCTCGTTTTTTTCAATCTGCATTGGTTTGGCATGGTGGTATGTGTTCCGAAAACAAGCTCATGAGGAACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

292

Amino Acids

32.72

Weight (kDa)

5.23

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 83 - 145 4.2e-09 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 250, 801
AclI AACGTT 1 cut(s) 441
AcsI RAATTY 2 cut(s) 579, 601
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 3 cut(s) 16, 290, 415
AfiI CCNNNNNNNGG 3 cut(s) 315, 361, 453
AflII CTTAAG 1 cut(s) 280
AgsI TTSAA 6 cut(s) 43, 123, 134, 481, 590, 818
AjnI CCWGG 3 cut(s) 354, 522, 754
AluBI AGCT 5 cut(s) 159, 514, 529, 806, 862
AluI AGCT 5 cut(s) 159, 514, 529, 806, 862
Alw21I GWGCWC 1 cut(s) 531
AoxI GGCC 2 cut(s) 82, 107
ApeKI GCWGC 2 cut(s) 465, 803
ApoI RAATTY 2 cut(s) 579, 601
AspLEI GCGC 1 cut(s) 646
AspS9I GGNCC 4 cut(s) 83, 108, 242, 456
AsuC2I CCSGG 1 cut(s) 310
AsuHPI GGTGA 2 cut(s) 386, 462
AvaII GGWCC 2 cut(s) 242, 456
BanII GRGCYC 1 cut(s) 531
BarI GAAGNNNNNNTAC 3 cut(s) 30, 406, 438
BbsI GAAGAC 1 cut(s) 671
Bbv12I GWGCWC 1 cut(s) 531
BbvI GCAGC 2 cut(s) 452, 815
BccI CCATC 2 cut(s) 266, 332
BciT130I CCWGG 3 cut(s) 356, 524, 756
BciVI GTATCC 1 cut(s) 686
BcnI CCSGG 1 cut(s) 310
BfaI CTAG 7 cut(s) 96, 162, 201, 515, 611, 621, 776
BfrI CTTAAG 1 cut(s) 280
BfuI GTATCC 1 cut(s) 686
BisI GCNGC 3 cut(s) 251, 466, 804
BlsI GCNGC 3 cut(s) 252, 467, 805
Bme1390I CCNGG 4 cut(s) 310, 356, 524, 756
Bme18I GGWCC 2 cut(s) 242, 456
BmgT120I GGNCC 4 cut(s) 83, 108, 242, 456
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 4 cut(s) 310, 356, 524, 756
BmsI GCATC 5 cut(s) 233, 285, 337, 614, 726
BpiI GAAGAC 1 cut(s) 671
BpmI CTGGAG 1 cut(s) 545
BpuEI CTTGAG 1 cut(s) 483
BpuMI CCSGG 1 cut(s) 310
BsaJI CCNNGG 2 cut(s) 10, 754
Bsc4I CCNNNNNNNGG 3 cut(s) 315, 361, 453
Bse1I ACTGG 2 cut(s) 458, 878
BseBI CCWGG 3 cut(s) 356, 524, 756
BseDI CCNNGG 2 cut(s) 10, 754
BseLI CCNNNNNNNGG 3 cut(s) 315, 361, 453
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 2 cut(s) 458, 878
BseXI GCAGC 2 cut(s) 452, 815
BsgI GTGCAG 1 cut(s) 780
BshFI GGCC 2 cut(s) 84, 109
BsiHKAI GWGCWC 1 cut(s) 531
BsiSI CCGG 1 cut(s) 309
BslI CCNNNNNNNGG 3 cut(s) 315, 361, 453
BsnI GGCC 2 cut(s) 84, 109
Bsp1286I GDGCHC 1 cut(s) 531
Bsp1407I TGTACA 1 cut(s) 288
BspACI CCGC 2 cut(s) 250, 801
BspANI GGCC 2 cut(s) 84, 109
BspCNI CTCAG 1 cut(s) 461
BspHI TCATGA 1 cut(s) 864
BspLI GGNNCC 1 cut(s) 110
BspTI CTTAAG 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 288
BsrI ACTGG 2 cut(s) 458, 878
BssECI CCNNGG 2 cut(s) 10, 754
BssT1I CCWWGG 1 cut(s) 10
Bst2UI CCWGG 3 cut(s) 356, 524, 756
Bst4CI ACNGT 5 cut(s) 59, 127, 293, 324, 698
BstAFI CTTAAG 1 cut(s) 280
BstAUI TGTACA 1 cut(s) 288
BstC8I GCNNGC 3 cut(s) 352, 512, 595
BstDEI CTNAG 2 cut(s) 448, 672
BstENI CCTNNNNNAGG 1 cut(s) 359
BstHHI GCGC 1 cut(s) 646
BstNI CCWGG 3 cut(s) 356, 524, 756
BstNSI RCATGY 2 cut(s) 354, 597
BstSCI CCNGG 4 cut(s) 308, 354, 522, 754
BstV1I GCAGC 2 cut(s) 452, 815
BstV2I GAAGAC 1 cut(s) 671
BsuI GTATCC 1 cut(s) 686
BsuRI GGCC 2 cut(s) 84, 109
Cac8I GCNNGC 3 cut(s) 352, 512, 595
CciI TCATGA 1 cut(s) 864
CfoI GCGC 1 cut(s) 646
Cfr13I GGNCC 4 cut(s) 83, 108, 242, 456
Csp6I GTAC 3 cut(s) 15, 289, 414
CviAII CATG 7 cut(s) 327, 351, 594, 606, 785, 836, 865
CviQI GTAC 3 cut(s) 15, 289, 414
DdeI CTNAG 2 cut(s) 448, 672
Ecl136II GAGCTC 1 cut(s) 529
Eco130I CCWWGG 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 531
Eco47I GGWCC 2 cut(s) 242, 456
Eco53kI GAGCTC 1 cut(s) 529
Eco57I CTGAAG 1 cut(s) 408
EcoICRI GAGCTC 1 cut(s) 529
EcoNI CCTNNNNNAGG 1 cut(s) 359
EcoRI GAATTC 1 cut(s) 601
EcoRII CCWGG 3 cut(s) 354, 522, 754
EcoT14I CCWWGG 1 cut(s) 10
EcoT22I ATGCAT 2 cut(s) 226, 352
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 7 cut(s) 330, 354, 597, 609, 788, 839, 868
FalI AAGNNNNNCTT 4 cut(s) 503, 535, 704, 736
FatI CATG 7 cut(s) 326, 350, 593, 605, 784, 835, 864
Fnu4HI GCNGC 3 cut(s) 251, 466, 804
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 3 cut(s) 251, 466, 804
FspBI CTAG 7 cut(s) 96, 162, 201, 515, 611, 621, 776
GlaI GCGC 1 cut(s) 645
GluI GCNGC 3 cut(s) 251, 466, 804
GsuI CTGGAG 1 cut(s) 545
HaeIII GGCC 2 cut(s) 84, 109
HapII CCGG 1 cut(s) 309
HhaI GCGC 1 cut(s) 646
Hin1II CATG 7 cut(s) 330, 354, 597, 609, 788, 839, 868
Hin6I GCGC 1 cut(s) 644
HinP1I GCGC 1 cut(s) 644
HinfI GANTC 7 cut(s) 30, 302, 487, 617, 633, 676, 733
HpaII CCGG 1 cut(s) 309
HphI GGTGA 2 cut(s) 386, 462
Hpy188I TCNGA 5 cut(s) 229, 451, 638, 750, 853
Hpy188III TCNNGA 7 cut(s) 27, 162, 296, 500, 621, 766, 865
HpyAV CCTTC 2 cut(s) 432, 487
HpyCH4III ACNGT 5 cut(s) 59, 127, 293, 324, 698
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 7 cut(s) 214, 224, 350, 390, 597, 761, 824
HpyF3I CTNAG 2 cut(s) 448, 672
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 7 cut(s) 330, 354, 597, 609, 788, 839, 868
HspAI GCGC 1 cut(s) 644
LmnI GCTCC 2 cut(s) 526, 534
Lsp1109I GCAGC 2 cut(s) 452, 815
LweI GCATC 5 cut(s) 233, 285, 337, 614, 726
MaeI CTAG 7 cut(s) 96, 162, 201, 515, 611, 621, 776
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 2 cut(s) 203, 665
MboII GAAGA 1 cut(s) 671
MhlI GDGCHC 1 cut(s) 531
MluCI AATT 6 cut(s) 171, 191, 313, 481, 579, 601
MlyI GAGTC 2 cut(s) 481, 685
MnlI CCTC 3 cut(s) 457, 483, 861
Mph1103I ATGCAT 2 cut(s) 226, 352
MseI TTAA 5 cut(s) 257, 281, 687, 711, 729
MspCI CTTAAG 1 cut(s) 280
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 4 cut(s) 310, 356, 524, 756
MvaI CCWGG 3 cut(s) 356, 524, 756
NciI CCSGG 1 cut(s) 310
NlaIII CATG 7 cut(s) 330, 354, 597, 609, 788, 839, 868
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 203
NsiI ATGCAT 2 cut(s) 226, 352
NspI RCATGY 2 cut(s) 354, 597
PaeI GCATGC 2 cut(s) 354, 597
PagI TCATGA 1 cut(s) 864
PfeI GAWTC 5 cut(s) 30, 302, 617, 633, 733
PfoI TCCNGGA 1 cut(s) 522
PkrI GCNGC 3 cut(s) 252, 467, 805
PleI GAGTC 2 cut(s) 481, 684
PpsI GAGTC 2 cut(s) 481, 684
Psp124BI GAGCTC 1 cut(s) 531
Psp1406I AACGTT 1 cut(s) 441
Psp6I CCWGG 3 cut(s) 354, 522, 754
PspGI CCWGG 3 cut(s) 354, 522, 754
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 4 cut(s) 83, 108, 242, 456
RsaI GTAC 3 cut(s) 16, 290, 415
RsaNI GTAC 3 cut(s) 15, 289, 414
SacI GAGCTC 1 cut(s) 531
SaqAI TTAA 5 cut(s) 257, 281, 687, 711, 729
SatI GCNGC 3 cut(s) 251, 466, 804
Sau96I GGNCC 4 cut(s) 83, 108, 242, 456
SchI GAGTC 2 cut(s) 481, 685
ScrFI CCNGG 4 cut(s) 310, 356, 524, 756
SduI GDGCHC 1 cut(s) 531
SfaNI GCATC 5 cut(s) 233, 285, 337, 614, 726
SinI GGWCC 2 cut(s) 242, 456
SmlI CTYRAG 2 cut(s) 280, 498
SmoI CTYRAG 2 cut(s) 280, 498
SphI GCATGC 2 cut(s) 354, 597
Sse9I AATT 6 cut(s) 171, 191, 313, 481, 579, 601
SsiI CCGC 2 cut(s) 250, 801
SspMI CTAG 7 cut(s) 96, 162, 201, 515, 611, 621, 776
SstI GAGCTC 1 cut(s) 531
StyD4I CCNGG 4 cut(s) 308, 354, 522, 754
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 5 cut(s) 59, 127, 293, 324, 698
TaiI ACGT 1 cut(s) 444
TaqI TCGA 1 cut(s) 48
TasI AATT 6 cut(s) 171, 191, 313, 481, 579, 601
TatI WGTACW 2 cut(s) 288, 413
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 5 cut(s) 30, 302, 617, 633, 733
Tru1I TTAA 5 cut(s) 257, 281, 687, 711, 729
Tru9I TTAA 5 cut(s) 257, 281, 687, 711, 729
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 2 cut(s) 465, 803
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 2 cut(s) 315, 594
TspGWI ACGGA 1 cut(s) 666
Vha464I CTTAAG 1 cut(s) 280
VpaK11BI GGWCC 2 cut(s) 242, 456
XagI CCTNNNNNAGG 1 cut(s) 359
XapI RAATTY 2 cut(s) 579, 601
XbaI TCTAGA 2 cut(s) 161, 620
XceI RCATGY 2 cut(s) 354, 597
XspI CTAG 7 cut(s) 96, 162, 201, 515, 611, 621, 776
Zsp2I ATGCAT 2 cut(s) 226, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.