RchiOBHm_Chr6g0308551

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000166
Physical Location & Seq
Forward (+)
66604060 .. 66606507
2448 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27745

Sequence Viewer

Length: 2448 bp
ATGATATGGTCTATATTTAGAAGTGGCTGTTGCTGGTACGAATACTCTTGGATCATGGCTGCTCTGTTTCACATTCTTCTTCTTTTTCTTGCAATTTATTTCCAAATCTTGTCTTCAACGTCCGACACTCCGAATAAAGGCTCATCCCTATCTGTAGAGAAACCAGACGATGTTTTAACTTCACGGGATGGAGTTTTCACCGCCGGGTTTCACCAAGTCGGCAACAATTCATTTTGCTTTGCTATTTGGTTCAGTGAGCCATTTGACCACTACAAAAACAGAACCATAGTCTGGATGGCCAACCGTGGCCAACCAGTCAATGGCAAACACTCAAAGCTCTCCCTCCTCAAAACTGGTGATCTCATCTTAACCGACGCTGGTCAATCCATTGTTTGGTCCACAGCCACCACTTCAGTCTCACAGGCGAACTTAAGCCTCCACAATTCCGGCAATCTTGTTTTGCTAAACTCGGAGCATGTCATTCTATGGCAGAGCTTTGATCACCCTACTGATACTCTTCTTCCAGACCAACCACTCACCAGAAGCACAATCCTTGTCTCCATGAGAAGCCCGAGCAACTACTCCTCTGGCTTCTACAAGCTCTTCTTTGACAATGACAACCTTCTCCGGCTACTCTTCGACGGTCTTGAGATTTCAAGTGTGTATTGGTTTGAGCCATGGCAAACAAGCCGAACAGCCAGAAGGTCCAAAGACAACAACAGTAGAGTTGCCGTGATGGATTCCTTAGGCAAGTTTACTTCATCAGACAAATATACTTTGATCGCTTCCGATTATGGTGCAGCTTCGCAAAGAAGACTGACGGTTGATTGTGATGGAAATGTTCGGTTGCACAGCCGGGCCAAACCAGGAGACAGATGGGTTGTGACAGGGCAGATCATGGAAAATGCTTGTATGATTCATGGGGTTTGTGGTCCAAATAGTGTGTGTGACTATGAGCCTAGTACTGGAAGAAAATGTTATTGCATTCCTGGTTACAAAATGGCAAACTATACTGATTGGTATTATGGTTGTGAACCTGAGTTCAATTACACTTGCGGCAGAGGTGAGTCCAGTTTCTTCAAGCTTTCGAGGCTCGACTTTTACGAGTATGATTACGGATACTTCCCCAACTACACATTCATGCAGTGTGAGGATCTTTGTTTGCAGCTGTGTAACTGCAAGGGTTTCCAATACTCTCCCCGCAGTAGAATATATGGCTGTTATCTGAAAACGGTGTTGCTCAATGGATACAGGTCTCCTAGCTCTTCTAAAGACATATATTTGAGAGTGCCAAAGATCCATATGTCATCTTATGGATTGCCACAAGAAGAGTATAGGTTGCGTTGCTTAGAGAAGGTGGTTGAGCTAGATAGGAGCTATGAGAAGAGCCATGTAACTGGTCTAGAGAAATTTTTGCTGTGGTTTGCCTGTGGAGTTGGAGGGTTTGAGATCATTTGTATACTTTTGGTTTTGGGTTTAATAACTCAAAATCAGAGAGATTCCAATGAGGATAAGTACGGCTACCTTCTTGCTGCAACTGGATTCAAGAGGTTTAGCTACTCTGAGCTTAAGAAGGCGACGCAGAGTTTTAGTGAAGAAATTGGAAGAGGAGCAGGAGGTGTTGTTTACAAAGCTGTGTTGGCTGATCATCGAGTTGCAGCAATCAAGAGGCTTAATGAAACCAACCAAGGAGAAGGTGAGTTTTCAGCAGAAGTCAACACTATTGGGAGGCTGAACCATATGCATTTGATTGAGATGTGGGGATATTGCTCGGAGGGGAAGCGCAGGCTTCTTGTTTATGAGTACATGGAGCATGGTTCCTTGGCACAAAAGTTAGCTTCCAATGTCCTTGATTGGGAAAAGAGGTTTGAGATTGCTCTAGGCACTGCAAAGGGTCTTGCTTATTTGCATGAAGAATGTTTGGAGTGGGTTTTACATTGTGATGTTAAGCCTCAAAACATACTCTTGGACTCCAATTATCAACCAAAGGTTGCAGATTTTGGCCTATCCAAGCTCCTCAACAAAGATGACCTTAAGAATTGGAGCTTTTCGAGGATACGAGGAACTAGAGGATACATTGCTCCGGAGTGGGTTTACAATTTGCCTATCACATCCAAAGTGGATGTGTACAGCTATGGGGTTGTGGTGTTGGAGATGGTGACCGGAAAGAACCCGATTAAGCCGGATGTGGATGCCATTGATGGTGAGCAGAGAAGGCTGATCATGTGGGTGAGGGAGAAATTACATGATGGAACTTCTGCTAGTGAAATTGAAGCTCGGATAGGAGACGTCATAGACCCTTCGTTTGAAGGTAAATATGATGTAAAAAAGACAGGGATTCTGTTGGGAGTGGCTTTACATTGCGTAGAGGAAGACAGAGACGCGAGACCAACTATGAACCAAGTCGTTGAGATGCTTGTGCTGCTTGACAAAGACCAAGAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

815

Amino Acids

92.8

Weight (kDa)

6.24

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 95 - 181 4.9e-24 D-mannose binding lectin
S_locus_glycop PF00954 266 - 334 1.5e-07 S-locus glycoprotein domain
PK_Tyr_Ser-Thr PF07714 530 - 806 1.2e-38 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 531 - 804 1.5e-49 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2292
AccB7I CCANNNNNTGG 3 cut(s) 291, 320, 393
AccI GTMKAC 1 cut(s) 1459
AccII CGCG 1 cut(s) 2384
AccIII TCCGGA 1 cut(s) 2083
AciI CCGC 3 cut(s) 201, 1056, 1201
AclWI GGATC 3 cut(s) 59, 1161, 1291
AcoI YGGCCR 2 cut(s) 297, 307
AcsI RAATTY 1 cut(s) 1409
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 2289
AfaI GTAC 5 cut(s) 38, 964, 1517, 1805, 2129
AfiI CCNNNNNNNGG 6 cut(s) 137, 291, 320, 393, 965, 1855
AflII CTTAAG 3 cut(s) 430, 1568, 2033
AgsI TTSAA 7 cut(s) 117, 657, 1045, 1081, 1546, 2273, 2309
AjnI CCWGG 2 cut(s) 865, 988
AjuI GAANNNNNNNTTGG 2 cut(s) 1121, 1153
Alw26I GTCTC 7 cut(s) 421, 562, 864, 1260, 2280, 2373, 2380
AlwI GGATC 3 cut(s) 59, 1161, 1291
Ama87I CYCGRG 1 cut(s) 571
Aor13HI TCCGGA 1 cut(s) 2083
AoxI GGCC 4 cut(s) 297, 307, 858, 2002
ApeKI GCWGC 6 cut(s) 59, 800, 1165, 1532, 1658, 2422
ApoI RAATTY 1 cut(s) 1409
ArsI GACNNNNNNTTYG 2 cut(s) 2288, 2320
AspLEI GCGC 1 cut(s) 1785
AspS9I GGNCC 4 cut(s) 396, 705, 858, 932
AsuC2I CCSGG 2 cut(s) 205, 857
AvaI CYCGRG 1 cut(s) 571
AvaII GGWCC 3 cut(s) 396, 705, 932
AxyI CCTNAGG 1 cut(s) 745
BalI TGGCCA 2 cut(s) 299, 309
BbsI GAAGAC 3 cut(s) 105, 820, 2379
BbvI GCAGC 6 cut(s) 46, 812, 1177, 1519, 1670, 2409
BccI CCATC 8 cut(s) 182, 289, 730, 827, 870, 2149, 2195, 2243
BceAI ACGGC 2 cut(s) 716, 1534
BcgI CGANNNNNNTGC 2 cut(s) 779, 813
BciT130I CCWGG 2 cut(s) 867, 990
BciVI GTATCC 4 cut(s) 1112, 1241, 2049, 2066
BclI TGATCA 3 cut(s) 499, 1645, 2220
BcnI CCSGG 2 cut(s) 205, 857
BcoDI GTCTC 7 cut(s) 421, 562, 864, 1260, 2280, 2373, 2380
BfaI CTAG 7 cut(s) 960, 1260, 1367, 1403, 1880, 2067, 2262
BfmI CTRYAG 1 cut(s) 153
BfrI CTTAAG 3 cut(s) 430, 1568, 2033
BfuI GTATCC 4 cut(s) 1112, 1241, 2049, 2066
BisI GCNGC 7 cut(s) 60, 801, 1057, 1166, 1533, 1659, 2423
BlsI GCNGC 7 cut(s) 61, 802, 1058, 1167, 1534, 1660, 2424
BmcAI AGTACT 1 cut(s) 964
Bme1390I CCNGG 4 cut(s) 205, 857, 867, 990
Bme18I GGWCC 3 cut(s) 396, 705, 932
BmeT110I CYCGRG 1 cut(s) 571
BmgT120I GGNCC 4 cut(s) 396, 705, 858, 932
BmiI GGNNCC 1 cut(s) 1819
BmrFI CCNGG 4 cut(s) 205, 857, 867, 990
BmsI GCATC 2 cut(s) 2182, 2403
BoxI GACNNNNGTC 1 cut(s) 378
BpiI GAAGAC 3 cut(s) 105, 820, 2379
BpuEI CTTGAG 1 cut(s) 668
BpuMI CCSGG 2 cut(s) 205, 857
BsaHI GRCGYC 1 cut(s) 2289
BsaI GGTCTC 2 cut(s) 1260, 2380
BsaJI CCNNGG 4 cut(s) 304, 677, 1687, 1821
BsaWI WCCGGW 2 cut(s) 2083, 2162
BsaXI ACNNNNNCTCC 2 cut(s) 1608, 1638
Bsc4I CCNNNNNNNGG 6 cut(s) 137, 291, 320, 393, 965, 1855
Bse1I ACTGG 6 cut(s) 314, 358, 970, 1071, 1402, 1543
Bse21I CCTNAGG 1 cut(s) 745
Bse3DI GCAATG 2 cut(s) 2076, 2359
BseAI TCCGGA 1 cut(s) 2083
BseBI CCWGG 2 cut(s) 867, 990
BseDI CCNNGG 4 cut(s) 304, 677, 1687, 1821
BseGI GGATG 7 cut(s) 143, 193, 300, 2111, 2128, 2191, 2197
BseLI CCNNNNNNNGG 6 cut(s) 137, 291, 320, 393, 965, 1855
BseMI GCAATG 2 cut(s) 2076, 2359
BseMII CTCAG 2 cut(s) 1029, 1554
BseNI ACTGG 6 cut(s) 314, 358, 970, 1071, 1402, 1543
BseRI GAGGAG 4 cut(s) 335, 574, 1623, 2006
BseXI GCAGC 6 cut(s) 46, 812, 1177, 1519, 1670, 2409
BsgI GTGCAG 1 cut(s) 819
Bsh1236I CGCG 1 cut(s) 2384
BshFI GGCC 4 cut(s) 299, 309, 860, 2004
BsiHKCI CYCGRG 1 cut(s) 571
BsiSI CCGG 7 cut(s) 204, 447, 628, 856, 2084, 2163, 2183
BslI CCNNNNNNNGG 6 cut(s) 137, 291, 320, 393, 965, 1855
BsmAI GTCTC 7 cut(s) 421, 562, 864, 1260, 2280, 2373, 2380
BsmBI CGTCTC 2 cut(s) 2280, 2373
BsmI GAATGC 1 cut(s) 984
BsnI GGCC 4 cut(s) 299, 309, 860, 2004
Bso31I GGTCTC 2 cut(s) 1260, 2380
BsoBI CYCGRG 1 cut(s) 571
Bsp13I TCCGGA 1 cut(s) 2083
Bsp1407I TGTACA 1 cut(s) 2127
Bsp19I CCATGG 1 cut(s) 677
BspACI CCGC 3 cut(s) 201, 1056, 1201
BspANI GGCC 4 cut(s) 299, 309, 860, 2004
BspCNI CTCAG 2 cut(s) 1030, 1555
BspEI TCCGGA 1 cut(s) 2083
BspFNI CGCG 1 cut(s) 2384
BspLI GGNNCC 1 cut(s) 1819
BspPI GGATC 3 cut(s) 59, 1161, 1291
BspQI GCTCTTC 3 cut(s) 608, 1270, 1379
BspTI CTTAAG 3 cut(s) 430, 1568, 2033
BspTNI GGTCTC 2 cut(s) 1260, 2380
BsrDI GCAATG 2 cut(s) 2076, 2359
BsrGI TGTACA 1 cut(s) 2127
BsrI ACTGG 6 cut(s) 314, 358, 970, 1071, 1402, 1543
BssECI CCNNGG 4 cut(s) 304, 677, 1687, 1821
BssNAI GTATAC 1 cut(s) 1460
BssNI GRCGYC 1 cut(s) 2289
BssT1I CCWWGG 3 cut(s) 677, 1687, 1821
Bst1107I GTATAC 1 cut(s) 1460
Bst2UI CCWGG 2 cut(s) 867, 990
Bst4CI ACNGT 5 cut(s) 305, 644, 722, 823, 1234
Bst6I CTCTTC 7 cut(s) 522, 608, 641, 1270, 1323, 1379, 1600
BstACI GRCGYC 1 cut(s) 2289
BstAFI CTTAAG 3 cut(s) 430, 1568, 2033
BstAUI TGTACA 1 cut(s) 2127
BstC8I GCNNGC 1 cut(s) 1787
BstDEI CTNAG 4 cut(s) 745, 1038, 1348, 1563
BstDSI CCRYGG 2 cut(s) 304, 677
BstEII GGTNACC 1 cut(s) 2158
BstF5I GGATG 7 cut(s) 143, 193, 300, 2111, 2128, 2191, 2197
BstFNI CGCG 1 cut(s) 2384
BstHHI GCGC 1 cut(s) 1785
BstMAI GTCTC 7 cut(s) 421, 562, 864, 1260, 2280, 2373, 2380
BstMWI GCNNNNNNNGC 4 cut(s) 1090, 1640, 2215, 2422
BstNI CCWGG 2 cut(s) 867, 990
BstNSI RCATGY 1 cut(s) 479
BstPAI GACNNNNGTC 1 cut(s) 378
BstPI GGTNACC 1 cut(s) 2158
BstSCI CCNGG 4 cut(s) 203, 855, 865, 988
BstSFI CTRYAG 1 cut(s) 153
BstUI CGCG 1 cut(s) 2384
BstV1I GCAGC 6 cut(s) 46, 812, 1177, 1519, 1670, 2409
BstV2I GAAGAC 3 cut(s) 105, 820, 2379
BstX2I RGATCY 2 cut(s) 1153, 1296
BstXI CCANNNNNNTGG 1 cut(s) 1397
BstYI RGATCY 2 cut(s) 1153, 1296
BstZ17I GTATAC 1 cut(s) 1460
Bsu36I CCTNAGG 1 cut(s) 745
BsuI GTATCC 4 cut(s) 1112, 1241, 2049, 2066
BsuRI GGCC 4 cut(s) 299, 309, 860, 2004
BtgI CCRYGG 2 cut(s) 304, 677
BtsCI GGATG 7 cut(s) 143, 193, 300, 2111, 2128, 2191, 2197
BtsI GCAGTG 2 cut(s) 1151, 1884
BtsIMutI CAGTG 3 cut(s) 259, 1151, 1884
Cac8I GCNNGC 1 cut(s) 1787
CfoI GCGC 1 cut(s) 1785
Cfr13I GGNCC 4 cut(s) 396, 705, 858, 932
CseI GACGC 3 cut(s) 383, 1588, 2390
Csp6I GTAC 5 cut(s) 37, 963, 1516, 1804, 2128
CviQI GTAC 5 cut(s) 37, 963, 1516, 1804, 2128
DdeI CTNAG 4 cut(s) 745, 1038, 1348, 1563
EaeI YGGCCR 2 cut(s) 297, 307
Eam1104I CTCTTC 7 cut(s) 522, 608, 641, 1270, 1323, 1379, 1600
EarI CTCTTC 7 cut(s) 522, 608, 641, 1270, 1323, 1379, 1600
Eco130I CCWWGG 3 cut(s) 677, 1687, 1821
Eco31I GGTCTC 2 cut(s) 1260, 2380
Eco47I GGWCC 3 cut(s) 396, 705, 932
Eco57I CTGAAG 1 cut(s) 396
Eco81I CCTNAGG 1 cut(s) 745
Eco88I CYCGRG 1 cut(s) 571
Eco91I GGTNACC 1 cut(s) 2158
EcoO65I GGTNACC 1 cut(s) 2158
EcoRII CCWGG 2 cut(s) 865, 988
EcoT14I CCWWGG 3 cut(s) 677, 1687, 1821
EcoT22I ATGCAT 1 cut(s) 1746
ErhI CCWWGG 3 cut(s) 677, 1687, 1821
Esp3I CGTCTC 2 cut(s) 2280, 2373
FalI AAGNNNNNCTT 4 cut(s) 590, 622, 2016, 2048
FauI CCCGC 1 cut(s) 1208
FauNDI CATATG 2 cut(s) 1302, 1740
FbaI TGATCA 3 cut(s) 499, 1645, 2220
FblI GTMKAC 1 cut(s) 1459
Fnu4HI GCNGC 7 cut(s) 60, 801, 1057, 1166, 1533, 1659, 2423
FokI GGATG 7 cut(s) 130, 200, 307, 2098, 2135, 2198, 2204
Fsp4HI GCNGC 7 cut(s) 60, 801, 1057, 1166, 1533, 1659, 2423
FspBI CTAG 7 cut(s) 960, 1260, 1367, 1403, 1880, 2067, 2262
GlaI GCGC 1 cut(s) 1784
GluI GCNGC 7 cut(s) 60, 801, 1057, 1166, 1533, 1659, 2423
HaeIII GGCC 4 cut(s) 299, 309, 860, 2004
HapII CCGG 7 cut(s) 204, 447, 628, 856, 2084, 2163, 2183
HgaI GACGC 3 cut(s) 383, 1588, 2390
HhaI GCGC 1 cut(s) 1785
Hin1I GRCGYC 1 cut(s) 2289
Hin6I GCGC 1 cut(s) 1783
HinP1I GCGC 1 cut(s) 1783
HincII GTYRAC 1 cut(s) 1717
HindII GTYRAC 1 cut(s) 1717
HindIII AAGCTT 1 cut(s) 1082
HinfI GANTC 7 cut(s) 740, 916, 1067, 1499, 1542, 1970, 2338
HpaII CCGG 7 cut(s) 204, 447, 628, 856, 2084, 2163, 2183
Hpy166II GTNNAC 8 cut(s) 399, 756, 1034, 1460, 1627, 1717, 2095, 2128
Hpy188III TCNNGA 7 cut(s) 292, 524, 647, 1403, 1546, 1666, 2084
Hpy8I GTNNAC 8 cut(s) 399, 756, 1034, 1460, 1627, 1717, 2095, 2128
Hpy99I CGWCG 3 cut(s) 377, 644, 1582
HpyAV CCTTC 9 cut(s) 632, 696, 1348, 1535, 1567, 1688, 2208, 2303, 2310
HpyCH4III ACNGT 5 cut(s) 305, 644, 722, 823, 1234
HpyCH4IV ACGT 2 cut(s) 119, 2289
HpyF10VI GCNNNNNNNGC 4 cut(s) 1090, 1640, 2215, 2422
HpyF3I CTNAG 4 cut(s) 745, 1038, 1348, 1563
HpySE526I ACGT 2 cut(s) 119, 2289
Hsp92I GRCGYC 1 cut(s) 2289
HspAI GCGC 1 cut(s) 1783
Kpn2I TCCGGA 1 cut(s) 2083
Ksp22I TGATCA 3 cut(s) 499, 1645, 2220
LguI GCTCTTC 3 cut(s) 608, 1270, 1379
LmnI GCTCC 7 cut(s) 472, 1374, 1610, 1810, 2019, 2043, 2086
Lsp1109I GCAGC 6 cut(s) 46, 812, 1177, 1519, 1670, 2409
LweI GCATC 2 cut(s) 2182, 2403
MaeI CTAG 7 cut(s) 960, 1260, 1367, 1403, 1880, 2067, 2262
MaeII ACGT 2 cut(s) 119, 2289
MaeIII GTNAC 6 cut(s) 883, 947, 992, 1172, 1393, 2158
MflI RGATCY 2 cut(s) 1153, 1296
MlsI TGGCCA 2 cut(s) 299, 309
MluNI TGGCCA 2 cut(s) 299, 309
MlyI GAGTC 2 cut(s) 1076, 1964
MmeI TCCRAC 3 cut(s) 147, 1417, 2130
Mox20I TGGCCA 2 cut(s) 299, 309
Mph1103I ATGCAT 1 cut(s) 1746
MroI TCCGGA 1 cut(s) 2083
MscI TGGCCA 2 cut(s) 299, 309
MseI TTAA 9 cut(s) 176, 368, 431, 1478, 1569, 1674, 1947, 2034, 2178
MslI CAYNNNNRTG 3 cut(s) 1139, 1941, 2228
Msp20I TGGCCA 2 cut(s) 299, 309
MspA1I CMGCKG 1 cut(s) 1168
MspCI CTTAAG 3 cut(s) 430, 1568, 2033
MspI CCGG 7 cut(s) 204, 447, 628, 856, 2084, 2163, 2183
MspR9I CCNGG 4 cut(s) 205, 857, 867, 990
Mva1269I GAATGC 1 cut(s) 984
MvaI CCWGG 2 cut(s) 867, 990
MvnI CGCG 1 cut(s) 2384
MwoI GCNNNNNNNGC 4 cut(s) 1090, 1640, 2215, 2422
NciI CCSGG 2 cut(s) 205, 857
NcoI CCATGG 1 cut(s) 677
NdeI CATATG 2 cut(s) 1302, 1740
NlaIV GGNNCC 1 cut(s) 1819
NmuCI GTSAC 3 cut(s) 883, 947, 2158
NsiI ATGCAT 1 cut(s) 1746
NspI RCATGY 1 cut(s) 479
PciSI GCTCTTC 3 cut(s) 608, 1270, 1379
PcsI WCGNNNNNNNCGW 1 cut(s) 1101
PctI GAATGC 1 cut(s) 984
PfeI GAWTC 5 cut(s) 740, 916, 1499, 1542, 2338
PflMI CCANNNNNTGG 3 cut(s) 291, 320, 393
PkrI GCNGC 7 cut(s) 61, 802, 1058, 1167, 1534, 1660, 2424
PleI GAGTC 2 cut(s) 1075, 1964
PpsI GAGTC 2 cut(s) 1075, 1964
PshAI GACNNNNGTC 1 cut(s) 378
Psp6I CCWGG 2 cut(s) 865, 988
PspEI GGTNACC 1 cut(s) 2158
PspGI CCWGG 2 cut(s) 865, 988
PspN4I GGNNCC 1 cut(s) 1819
PspPI GGNCC 4 cut(s) 396, 705, 858, 932
PsuI RGATCY 2 cut(s) 1153, 1296
PvuII CAGCTG 1 cut(s) 1168
RsaI GTAC 5 cut(s) 38, 964, 1517, 1805, 2129
RsaNI GTAC 5 cut(s) 37, 963, 1516, 1804, 2128
RseI CAYNNNNRTG 3 cut(s) 1139, 1941, 2228
SapI GCTCTTC 3 cut(s) 608, 1270, 1379
SaqAI TTAA 9 cut(s) 176, 368, 431, 1478, 1569, 1674, 1947, 2034, 2178
SatI GCNGC 7 cut(s) 60, 801, 1057, 1166, 1533, 1659, 2423
Sau96I GGNCC 4 cut(s) 396, 705, 858, 932
ScaI AGTACT 1 cut(s) 964
SchI GAGTC 2 cut(s) 1076, 1964
ScrFI CCNGG 4 cut(s) 205, 857, 867, 990
SfaNI GCATC 2 cut(s) 2182, 2403
SfcI CTRYAG 1 cut(s) 153
SinI GGWCC 3 cut(s) 396, 705, 932
SmiMI CAYNNNNRTG 3 cut(s) 1139, 1941, 2228
SmlI CTYRAG 4 cut(s) 430, 647, 1568, 2033
SmoI CTYRAG 4 cut(s) 430, 647, 1568, 2033
SsiI CCGC 3 cut(s) 201, 1056, 1201
SspMI CTAG 7 cut(s) 960, 1260, 1367, 1403, 1880, 2067, 2262
StyD4I CCNGG 4 cut(s) 203, 855, 865, 988
StyI CCWWGG 3 cut(s) 677, 1687, 1821
TaaI ACNGT 5 cut(s) 305, 644, 722, 823, 1234
TaiI ACGT 2 cut(s) 122, 2292
TaqI TCGA 5 cut(s) 639, 1088, 1095, 1651, 2051
TatI WGTACW 3 cut(s) 962, 1803, 2127
TauI GCSGC 1 cut(s) 1059
TfiI GAWTC 5 cut(s) 740, 916, 1499, 1542, 2338
Tru1I TTAA 9 cut(s) 176, 368, 431, 1478, 1569, 1674, 1947, 2034, 2178
Tru9I TTAA 9 cut(s) 176, 368, 431, 1478, 1569, 1674, 1947, 2034, 2178
TscAI CASTG 3 cut(s) 259, 1151, 1891
TseFI GTSAC 3 cut(s) 883, 947, 2158
TseI GCWGC 6 cut(s) 59, 800, 1165, 1532, 1658, 2422
Tsp45I GTSAC 3 cut(s) 883, 947, 2158
TspDTI ATGAA 7 cut(s) 219, 750, 908, 1129, 1692, 1926, 2411
TspGWI ACGGA 1 cut(s) 1131
TspRI CASTG 3 cut(s) 259, 1151, 1891
Van91I CCANNNNNTGG 3 cut(s) 291, 320, 393
Vha464I CTTAAG 3 cut(s) 430, 1568, 2033
VpaK11BI GGWCC 3 cut(s) 396, 705, 932
XapI RAATTY 1 cut(s) 1409
XbaI TCTAGA 1 cut(s) 1402
XceI RCATGY 1 cut(s) 479
XcmI CCANNNNNNNNNTGG 3 cut(s) 292, 317, 873
XmiI GTMKAC 1 cut(s) 1459
XspI CTAG 7 cut(s) 960, 1260, 1367, 1403, 1880, 2067, 2262
ZraI GACGTC 1 cut(s) 2290
ZrmI AGTACT 1 cut(s) 964
Zsp2I ATGCAT 1 cut(s) 1746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.