Rw6G041680

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000166
Physical Location & Seq
Forward (+)
65311142 .. 65313610
2469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G041680.1

Sequence Viewer

Length: 2469 bp
ATGATATGGTCTATATTTAGAAGTGGCTGTTGCTGGTACGAATACTCTTGGATCATGGCTGCTCTGTTTCACATTCTTCTTCTTTTTCTTGCAATTTATTTCCAAATCTCGTCTTCAACGTCCGACACTCTGAATAAAGGCTCATCCCTATCTGTAGAGAAACCAGACGATGTTTTAACTTCACCGGATGGAGTTTTCACCGCCGGGTTTCACCAAGTCGGCAACAATTCATTTTGCTTTGCTATTTGGTTCAGTGAGCCATTTGACCACTACAAAAACAGAACCATAGTCTGGATGGCCAACCGTGGCCAACCAGTCAATGGCAAACACTCAAAGCTCTCCCTCCTCAAAACTGGTGATCTCATCTTAACCGACGCTGGTCAATCCATTGTTTGGTCCACAGCCACCACTTCAGTCTCTCCAGCTAACTTAAGCCTCCACAATTTGGGCAATCTTGTTTTGCTCAACTCGGAGCATGTCAGTCTATGGCAGAGCTTTGATTACCCTACTGATACTCTTCTTCCAGACCAACCACTCACTAGAAGCACAATCCTTGTCTCCATGAGAAGCCCGAGCAACCACTCCTCTGGCTTCTACAAGCTCTTCTTTGACAATGACAACCTTCTCCGGCTACTCTTCGACGGTCTTGAGATTTCAAGTTTGTATTGGTTTGAGCCGTGGCTCACAGGCCGACAAGCAGGAAGGTCCAAAGACAACAACAGTAGAGTTGCCGTGATGGATTCCTTAGGCAAGTTTACTTCATCAGACAAATATACTTTGATCGCTTCCGATTGTGGTGTAGCTTGGCAAAGAAGACTGACGGTTGATTGTGATGGAAATGTTCGGTTGCACAGCCGGACCAAACCCGGAGACAGATGGGTTGTGACAGGGCAGATCATGGAAAATGCTTGTATGATTCATGGGGTTTGTGGTCCTAATAGTGTGTGTGACTATGAGCCTAGTACTGGAAGAAAATGTTCTTGCATTCCTGGTTACAAAATGGCAAACTATACTGATTGGTATTATGGTTGTGAACCTGAGTTCAATTACACTTGCGGCAGAGGTGAGTCCAGTTTCTTCAAGCTTTCGAGGCTCGACTTTTACGGGTATGATTACGGATTCTTTCCCAACTACACATTCATGCAGTGTGAGGATCTCTGTTTGCAGCTGTGTAACTGCAAGGGTTTCCAATACTCTCTCCGCGATAAATTCTCTAACTCCCGCAGTGGAATATATGGCTGTTATCCGAAAATGGTGTTGCTCAATGGATACAGGACTCCAAGCTCTTCTAAAGACACATATTTGAGAGTGCCAAAGATCCATATGTCATCTTATGGATTGCCACAAGAAGAGTATAGGTTGCGTTGCATAGATAAGGTGGTTGAGCTAGATAGGAGCTATGAGAAGAGCCATGTAACTGGTCTAGAGAAATTTTTGCTGTGGTTTGCCTGTGGAGTTGGAGGGTTTGAGATCATTTGTATACTTTTGGTTTTGGGTTTAATAACTCAAAATTGGAGAGATTCCAATGAGGATAAGCACGGCTACCTTCTTGCTGCAACTGGATTCAAGAGGTTTAGCTACTCTGAGCTTAGGAAGGCGACGCGGGGTTTTAGTGAAGAAATTGGAAGAGGAGCAGGAGGTGTTGTTTACAAAGCTGTGTTAGCTGATCATCGAGTTGCAGCGATCAAGAGGCTTAATGAAACCAACCAAGGAGAAGGTGAGTTTTCAGCAGAAGTCAACACTATTGGGAGGCTGAACCATATGCATTTGATTGAGATGTGGGGATATTGCTCGGAGGGAAAGCACAGGCTTCTTGTTTATGAGTACATGGAGCATGGTTCCTTGGCACAGAAGTTAGCTTCCCATGAGCTTGATTGGGAGATGAGGTTTGAGATTGCTCTAGGCACTGCAAAGGGTCTTGCTTATTTGCATGAAGAATGTTTGGAGTGGGTTTTACATTGTGATGTTAAGCCTCAAAACATACTCTTGGACTCCAATTATCAACCAAAGGTTGCAGATTTTGGCCTATCCAAGCTTCTCAACAGAGATGACCTTAAGAACTGGAGCTTTTCGAGGATACGAGGAACTAGAGGTTACATTGCTCCGGAGTGGGTTTACAATTTGCCTATCACATCCAAAGTGGATGTGTATAGCTATGGGGTTGTGGTGTTGGAGATGGTGACCGGAAAGAACCCGATTAAGCCAGATGTGGATGCCATTGATGGTGAGCAGAGAAGGCTGATCATGTGGGTGAGGGAGAAATTACATAATGGAACTTCAGCTAGTGAAATTGAAGCTCGGATAGGAGATGTCATAGACCCTTCGTTTGAAGGTAAATATGATGTAAAAAAGATGGGGATTCTTTTGGGAGTGGCTTTACACTGCGTAGAGGAAGACAGAGACGCGAGACCAACTATGAGCCAAGTCATTGAGATGCTTGTGCTGCTTGACAAAGACCAAGAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

822

Amino Acids

93.42

Weight (kDa)

6.18

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 95 - 181 2.5e-22 D-mannose binding lectin
S_locus_glycop PF00954 270 - 334 2.3e-07 S-locus glycoprotein domain
PK_Tyr_Ser-Thr PF07714 537 - 812 1.8e-38 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 538 - 811 5e-49 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 4 cut(s) 291, 320, 393, 445
AccI GTMKAC 1 cut(s) 1480
AccII CGCG 3 cut(s) 1203, 1603, 2405
AccIII TCCGGA 1 cut(s) 2104
AciI CCGC 5 cut(s) 201, 1056, 1201, 1222, 1603
AclWI GGATC 3 cut(s) 59, 1161, 1312
AcoI YGGCCR 2 cut(s) 297, 307
AcsI RAATTY 2 cut(s) 1208, 1430
AcuI CTGAAG 2 cut(s) 396, 2262
AfaI GTAC 3 cut(s) 38, 964, 1826
AfiI CCNNNNNNNGG 5 cut(s) 291, 320, 393, 445, 965
AflII CTTAAG 2 cut(s) 430, 2054
AgsI TTSAA 7 cut(s) 117, 657, 1045, 1081, 1567, 2294, 2330
AjnI CCWGG 1 cut(s) 988
AjuI GAANNNNNNNTTGG 2 cut(s) 1121, 1153
Alw26I GTCTC 5 cut(s) 421, 562, 864, 2394, 2401
AlwI GGATC 3 cut(s) 59, 1161, 1312
Ama87I CYCGRG 1 cut(s) 571
Aor13HI TCCGGA 1 cut(s) 2104
AoxI GGCC 4 cut(s) 297, 307, 688, 2023
ApeKI GCWGC 5 cut(s) 59, 1165, 1553, 1679, 2443
ApoI RAATTY 2 cut(s) 1208, 1430
ArsI GACNNNNNNTTYG 2 cut(s) 2309, 2341
Asp700I GAANNNNTTC 1 cut(s) 976
AspS9I GGNCC 4 cut(s) 396, 705, 858, 932
AsuC2I CCSGG 2 cut(s) 205, 867
AsuHPI GGTGA 9 cut(s) 174, 190, 203, 368, 1076, 1730, 2191, 2237, 2263
AvaI CYCGRG 1 cut(s) 571
AvaII GGWCC 4 cut(s) 396, 705, 858, 932
AxyI CCTNAGG 1 cut(s) 745
BalI TGGCCA 2 cut(s) 299, 309
BbsI GAAGAC 3 cut(s) 105, 820, 2400
BbvI GCAGC 5 cut(s) 46, 1177, 1540, 1691, 2430
BccI CCATC 8 cut(s) 182, 289, 730, 827, 870, 2170, 2216, 2347
BceAI ACGGC 3 cut(s) 661, 716, 1555
BciT130I CCWGG 1 cut(s) 990
BciVI GTATCC 2 cut(s) 1262, 2070
BclI TGATCA 2 cut(s) 1666, 2241
BcnI CCSGG 2 cut(s) 205, 867
BcoDI GTCTC 5 cut(s) 421, 562, 864, 2394, 2401
BfaI CTAG 7 cut(s) 540, 960, 1388, 1424, 1901, 2088, 2283
BfmI CTRYAG 1 cut(s) 153
BfrI CTTAAG 2 cut(s) 430, 2054
BfuI GTATCC 2 cut(s) 1262, 2070
BisI GCNGC 6 cut(s) 60, 1057, 1166, 1554, 1680, 2444
BlsI GCNGC 6 cut(s) 61, 1058, 1167, 1555, 1681, 2445
BmcAI AGTACT 1 cut(s) 964
Bme1390I CCNGG 3 cut(s) 205, 867, 990
Bme18I GGWCC 4 cut(s) 396, 705, 858, 932
BmeT110I CYCGRG 1 cut(s) 571
BmgT120I GGNCC 4 cut(s) 396, 705, 858, 932
BmiI GGNNCC 1 cut(s) 1840
BmrFI CCNGG 3 cut(s) 205, 867, 990
BmsI GCATC 2 cut(s) 2203, 2424
BoxI GACNNNNGTC 1 cut(s) 378
BpiI GAAGAC 3 cut(s) 105, 820, 2400
BpmI CTGGAG 2 cut(s) 405, 2083
Bpu10I CCTNAGC 1 cut(s) 1589
BpuEI CTTGAG 1 cut(s) 668
BpuMI CCSGG 2 cut(s) 205, 867
BsaI GGTCTC 1 cut(s) 2401
BsaJI CCNNGG 4 cut(s) 304, 677, 1708, 1842
BsaWI WCCGGW 3 cut(s) 184, 2104, 2183
BsaXI ACNNNNNCTCC 4 cut(s) 1629, 1659, 1871, 1901
Bsc4I CCNNNNNNNGG 5 cut(s) 291, 320, 393, 445, 965
Bse1I ACTGG 7 cut(s) 314, 358, 970, 1071, 1423, 1564, 2066
Bse21I CCTNAGG 1 cut(s) 745
Bse3DI GCAATG 1 cut(s) 2097
BseAI TCCGGA 1 cut(s) 2104
BseBI CCWGG 1 cut(s) 990
BseDI CCNNGG 4 cut(s) 304, 677, 1708, 1842
BseGI GGATG 6 cut(s) 143, 193, 300, 2132, 2149, 2218
BseLI CCNNNNNNNGG 5 cut(s) 291, 320, 393, 445, 965
BseMI GCAATG 1 cut(s) 2097
BseMII CTCAG 2 cut(s) 1029, 1575
BseNI ACTGG 7 cut(s) 314, 358, 970, 1071, 1423, 1564, 2066
BseRI GAGGAG 3 cut(s) 335, 574, 1644
BseXI GCAGC 5 cut(s) 46, 1177, 1540, 1691, 2430
Bsh1236I CGCG 3 cut(s) 1203, 1603, 2405
BshFI GGCC 4 cut(s) 299, 309, 690, 2025
BsiHKCI CYCGRG 1 cut(s) 571
BsiSI CCGG 7 cut(s) 185, 204, 628, 856, 867, 2105, 2184
BslI CCNNNNNNNGG 5 cut(s) 291, 320, 393, 445, 965
BsmAI GTCTC 5 cut(s) 421, 562, 864, 2394, 2401
BsmBI CGTCTC 1 cut(s) 2394
BsmI GAATGC 1 cut(s) 984
BsnI GGCC 4 cut(s) 299, 309, 690, 2025
Bso31I GGTCTC 1 cut(s) 2401
BsoBI CYCGRG 1 cut(s) 571
Bsp13I TCCGGA 1 cut(s) 2104
BspACI CCGC 5 cut(s) 201, 1056, 1201, 1222, 1603
BspANI GGCC 4 cut(s) 299, 309, 690, 2025
BspCNI CTCAG 2 cut(s) 1030, 1576
BspEI TCCGGA 1 cut(s) 2104
BspFNI CGCG 3 cut(s) 1203, 1603, 2405
BspLI GGNNCC 1 cut(s) 1840
BspPI GGATC 3 cut(s) 59, 1161, 1312
BspQI GCTCTTC 3 cut(s) 608, 1291, 1400
BspTI CTTAAG 2 cut(s) 430, 2054
BspTNI GGTCTC 1 cut(s) 2401
BsrDI GCAATG 1 cut(s) 2097
BsrI ACTGG 7 cut(s) 314, 358, 970, 1071, 1423, 1564, 2066
BssECI CCNNGG 4 cut(s) 304, 677, 1708, 1842
BssNAI GTATAC 1 cut(s) 1481
BssT1I CCWWGG 2 cut(s) 1708, 1842
Bst1107I GTATAC 1 cut(s) 1481
Bst2UI CCWGG 1 cut(s) 990
Bst4CI ACNGT 4 cut(s) 305, 644, 722, 823
Bst6I CTCTTC 7 cut(s) 522, 608, 641, 1291, 1344, 1400, 1621
BstAFI CTTAAG 2 cut(s) 430, 2054
BstDEI CTNAG 4 cut(s) 745, 1038, 1584, 1589
BstDSI CCRYGG 2 cut(s) 304, 677
BstEII GGTNACC 1 cut(s) 2179
BstF5I GGATG 6 cut(s) 143, 193, 300, 2132, 2149, 2218
BstFNI CGCG 3 cut(s) 1203, 1603, 2405
BstMAI GTCTC 5 cut(s) 421, 562, 864, 2394, 2401
BstMWI GCNNNNNNNGC 4 cut(s) 1090, 1661, 2236, 2443
BstNI CCWGG 1 cut(s) 990
BstNSI RCATGY 1 cut(s) 479
BstPAI GACNNNNGTC 1 cut(s) 378
BstPI GGTNACC 1 cut(s) 2179
BstSCI CCNGG 3 cut(s) 203, 865, 988
BstSFI CTRYAG 1 cut(s) 153
BstUI CGCG 3 cut(s) 1203, 1603, 2405
BstV1I GCAGC 5 cut(s) 46, 1177, 1540, 1691, 2430
BstV2I GAAGAC 3 cut(s) 105, 820, 2400
BstX2I RGATCY 2 cut(s) 1153, 1317
BstXI CCANNNNNNTGG 2 cut(s) 587, 1418
BstYI RGATCY 2 cut(s) 1153, 1317
BstZ17I GTATAC 1 cut(s) 1481
Bsu36I CCTNAGG 1 cut(s) 745
BsuI GTATCC 2 cut(s) 1262, 2070
BsuRI GGCC 4 cut(s) 299, 309, 690, 2025
BtgI CCRYGG 2 cut(s) 304, 677
BtsCI GGATG 6 cut(s) 143, 193, 300, 2132, 2149, 2218
BtsI GCAGTG 4 cut(s) 1151, 1231, 1905, 2380
BtsIMutI CAGTG 5 cut(s) 259, 1151, 1231, 1905, 2380
Cfr13I GGNCC 4 cut(s) 396, 705, 858, 932
CseI GACGC 3 cut(s) 383, 1609, 2411
Csp6I GTAC 3 cut(s) 37, 963, 1825
CviQI GTAC 3 cut(s) 37, 963, 1825
DdeI CTNAG 4 cut(s) 745, 1038, 1584, 1589
EaeI YGGCCR 2 cut(s) 297, 307
Eam1104I CTCTTC 7 cut(s) 522, 608, 641, 1291, 1344, 1400, 1621
EarI CTCTTC 7 cut(s) 522, 608, 641, 1291, 1344, 1400, 1621
Eco130I CCWWGG 2 cut(s) 1708, 1842
Eco31I GGTCTC 1 cut(s) 2401
Eco47I GGWCC 4 cut(s) 396, 705, 858, 932
Eco57I CTGAAG 2 cut(s) 396, 2262
Eco81I CCTNAGG 1 cut(s) 745
Eco88I CYCGRG 1 cut(s) 571
Eco91I GGTNACC 1 cut(s) 2179
EcoO65I GGTNACC 1 cut(s) 2179
EcoRII CCWGG 1 cut(s) 988
EcoT14I CCWWGG 2 cut(s) 1708, 1842
EcoT22I ATGCAT 1 cut(s) 1767
ErhI CCWWGG 2 cut(s) 1708, 1842
Esp3I CGTCTC 1 cut(s) 2394
FalI AAGNNNNNCTT 2 cut(s) 590, 622
FauI CCCGC 2 cut(s) 1229, 1596
FauNDI CATATG 2 cut(s) 1323, 1761
FbaI TGATCA 2 cut(s) 1666, 2241
FblI GTMKAC 1 cut(s) 1480
Fnu4HI GCNGC 6 cut(s) 60, 1057, 1166, 1554, 1680, 2444
FokI GGATG 6 cut(s) 130, 200, 307, 2119, 2156, 2225
Fsp4HI GCNGC 6 cut(s) 60, 1057, 1166, 1554, 1680, 2444
FspBI CTAG 7 cut(s) 540, 960, 1388, 1424, 1901, 2088, 2283
GluI GCNGC 6 cut(s) 60, 1057, 1166, 1554, 1680, 2444
GsuI CTGGAG 2 cut(s) 405, 2083
HaeIII GGCC 4 cut(s) 299, 309, 690, 2025
HapII CCGG 7 cut(s) 185, 204, 628, 856, 867, 2105, 2184
HgaI GACGC 3 cut(s) 383, 1609, 2411
HincII GTYRAC 1 cut(s) 1738
HindII GTYRAC 1 cut(s) 1738
HindIII AAGCTT 2 cut(s) 1082, 2033
HinfI GANTC 9 cut(s) 740, 916, 1067, 1119, 1276, 1520, 1563, 1991, 2359
HpaII CCGG 7 cut(s) 185, 204, 628, 856, 867, 2105, 2184
HphI GGTGA 9 cut(s) 174, 190, 203, 368, 1076, 1730, 2191, 2237, 2263
Hpy166II GTNNAC 7 cut(s) 399, 756, 1034, 1481, 1648, 1738, 2116
Hpy188I TCNGA 9 cut(s) 124, 132, 472, 766, 790, 1248, 1585, 1795, 2301
Hpy188III TCNNGA 7 cut(s) 292, 524, 647, 1424, 1567, 1687, 2105
Hpy8I GTNNAC 7 cut(s) 399, 756, 1034, 1481, 1648, 1738, 2116
Hpy99I CGWCG 3 cut(s) 377, 644, 1603
HpyAV CCTTC 8 cut(s) 632, 696, 1556, 1588, 1709, 2229, 2324, 2331
HpyCH4III ACNGT 4 cut(s) 305, 644, 722, 823
HpyCH4IV ACGT 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 4 cut(s) 1090, 1661, 2236, 2443
HpyF3I CTNAG 4 cut(s) 745, 1038, 1584, 1589
HpySE526I ACGT 1 cut(s) 119
Kpn2I TCCGGA 1 cut(s) 2104
Ksp22I TGATCA 2 cut(s) 1666, 2241
LguI GCTCTTC 3 cut(s) 608, 1291, 1400
LmnI GCTCC 6 cut(s) 472, 1395, 1631, 1831, 2064, 2107
Lsp1109I GCAGC 5 cut(s) 46, 1177, 1540, 1691, 2430
LweI GCATC 2 cut(s) 2203, 2424
MaeI CTAG 7 cut(s) 540, 960, 1388, 1424, 1901, 2088, 2283
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 7 cut(s) 883, 947, 992, 1172, 1414, 2093, 2179
MflI RGATCY 2 cut(s) 1153, 1317
MlsI TGGCCA 2 cut(s) 299, 309
MluNI TGGCCA 2 cut(s) 299, 309
MlyI GAGTC 3 cut(s) 1076, 1270, 1985
MmeI TCCRAC 3 cut(s) 147, 1438, 2151
Mox20I TGGCCA 2 cut(s) 299, 309
Mph1103I ATGCAT 1 cut(s) 1767
MroI TCCGGA 1 cut(s) 2104
MroXI GAANNNNTTC 1 cut(s) 976
MscI TGGCCA 2 cut(s) 299, 309
MseI TTAA 8 cut(s) 176, 368, 431, 1499, 1695, 1968, 2055, 2199
MslI CAYNNNNRTG 4 cut(s) 1139, 1962, 2249, 2432
Msp20I TGGCCA 2 cut(s) 299, 309
MspA1I CMGCKG 1 cut(s) 1168
MspCI CTTAAG 2 cut(s) 430, 2054
MspI CCGG 7 cut(s) 185, 204, 628, 856, 867, 2105, 2184
MspR9I CCNGG 3 cut(s) 205, 867, 990
Mva1269I GAATGC 1 cut(s) 984
MvaI CCWGG 1 cut(s) 990
MvnI CGCG 3 cut(s) 1203, 1603, 2405
MwoI GCNNNNNNNGC 4 cut(s) 1090, 1661, 2236, 2443
NciI CCSGG 2 cut(s) 205, 867
NdeI CATATG 2 cut(s) 1323, 1761
NlaIV GGNNCC 1 cut(s) 1840
NmuCI GTSAC 3 cut(s) 883, 947, 2179
NsiI ATGCAT 1 cut(s) 1767
NspI RCATGY 1 cut(s) 479
PciSI GCTCTTC 3 cut(s) 608, 1291, 1400
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PctI GAATGC 1 cut(s) 984
PdmI GAANNNNTTC 1 cut(s) 976
PfeI GAWTC 6 cut(s) 740, 916, 1119, 1520, 1563, 2359
PflMI CCANNNNNTGG 4 cut(s) 291, 320, 393, 445
PkrI GCNGC 6 cut(s) 61, 1058, 1167, 1555, 1681, 2445
PleI GAGTC 3 cut(s) 1075, 1270, 1985
PpsI GAGTC 3 cut(s) 1075, 1270, 1985
PshAI GACNNNNGTC 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 988
PspEI GGTNACC 1 cut(s) 2179
PspGI CCWGG 1 cut(s) 988
PspN4I GGNNCC 1 cut(s) 1840
PspPI GGNCC 4 cut(s) 396, 705, 858, 932
PsuI RGATCY 2 cut(s) 1153, 1317
PvuII CAGCTG 1 cut(s) 1168
RsaI GTAC 3 cut(s) 38, 964, 1826
RsaNI GTAC 3 cut(s) 37, 963, 1825
RseI CAYNNNNRTG 4 cut(s) 1139, 1962, 2249, 2432
SapI GCTCTTC 3 cut(s) 608, 1291, 1400
SaqAI TTAA 8 cut(s) 176, 368, 431, 1499, 1695, 1968, 2055, 2199
SatI GCNGC 6 cut(s) 60, 1057, 1166, 1554, 1680, 2444
Sau96I GGNCC 4 cut(s) 396, 705, 858, 932
ScaI AGTACT 1 cut(s) 964
SchI GAGTC 3 cut(s) 1076, 1270, 1985
ScrFI CCNGG 3 cut(s) 205, 867, 990
SfaNI GCATC 2 cut(s) 2203, 2424
SfcI CTRYAG 1 cut(s) 153
SinI GGWCC 4 cut(s) 396, 705, 858, 932
SmiMI CAYNNNNRTG 4 cut(s) 1139, 1962, 2249, 2432
SmlI CTYRAG 3 cut(s) 430, 647, 2054
SmoI CTYRAG 3 cut(s) 430, 647, 2054
SsiI CCGC 5 cut(s) 201, 1056, 1201, 1222, 1603
SspMI CTAG 7 cut(s) 540, 960, 1388, 1424, 1901, 2088, 2283
StyD4I CCNGG 3 cut(s) 203, 865, 988
StyI CCWWGG 2 cut(s) 1708, 1842
TaaI ACNGT 4 cut(s) 305, 644, 722, 823
TaiI ACGT 1 cut(s) 122
TaqI TCGA 5 cut(s) 639, 1088, 1095, 1672, 2072
TatI WGTACW 2 cut(s) 962, 1824
TauI GCSGC 1 cut(s) 1059
TfiI GAWTC 6 cut(s) 740, 916, 1119, 1520, 1563, 2359
Tru1I TTAA 8 cut(s) 176, 368, 431, 1499, 1695, 1968, 2055, 2199
Tru9I TTAA 8 cut(s) 176, 368, 431, 1499, 1695, 1968, 2055, 2199
TscAI CASTG 5 cut(s) 259, 1151, 1231, 1912, 2387
TseFI GTSAC 3 cut(s) 883, 947, 2179
TseI GCWGC 5 cut(s) 59, 1165, 1553, 1679, 2443
Tsp45I GTSAC 3 cut(s) 883, 947, 2179
TspDTI ATGAA 6 cut(s) 219, 750, 908, 1129, 1713, 1947
TspGWI ACGGA 1 cut(s) 1131
TspRI CASTG 5 cut(s) 259, 1151, 1231, 1912, 2387
Van91I CCANNNNNTGG 4 cut(s) 291, 320, 393, 445
Vha464I CTTAAG 2 cut(s) 430, 2054
VpaK11BI GGWCC 4 cut(s) 396, 705, 858, 932
XapI RAATTY 2 cut(s) 1208, 1430
XbaI TCTAGA 1 cut(s) 1423
XceI RCATGY 1 cut(s) 479
XcmI CCANNNNNNNNNTGG 2 cut(s) 292, 317
XmiI GTMKAC 1 cut(s) 1480
XmnI GAANNNNTTC 1 cut(s) 976
XspI CTAG 7 cut(s) 540, 960, 1388, 1424, 1901, 2088, 2283
ZrmI AGTACT 1 cut(s) 964
Zsp2I ATGCAT 1 cut(s) 1767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.