MD12G1151500.v1.1

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
23127816 .. 23128244
429 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1151500.v1.1.491

Sequence Viewer

Length: 429 bp
ATGTCAAAGCTATTCACAGATATCTATGGCATCAAAGATATGCAAAGAAGGAGATTTTCAAAAGCATGGGGAACCAGAGGTTATATGGCTCTAGAGTGGATGATGAACCTGAAAATTGATGCCAAGGCGGATGTGTACAACTATGGGATTGTTTTGCTGGAACTGTTGAGTGGAAAGAGTGCTTCGATTCTCATTTCGACACTTGCCAAAGAGTACAATGAGTGCAACCAACTGGTTCAATATGTGACTGAAAAGATCCAAATAGAAGGGCTCGAGAAAGTGATTAACCCGAAATTACTGTGTGAGTACAAAAAGAAGAAGCTCGAAGGGCTGATGAAAGTTACCCTATTGTGTGTTCAAGAGGACCGCAATGCAAGGCCAACCATGAGTAAGGTTGTGGAGCTTCTACTTGACAATGATCATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

143

Amino Acids

16.46

Weight (kDa)

8.68

Isoelectric Point (pI)

25.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 16 - 134 1.5e-09 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 27 - 136 5.9e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 128, 367
AclWI GGATC 1 cut(s) 250
AfaI GTAC 3 cut(s) 137, 215, 308
AgsI TTSAA 3 cut(s) 60, 239, 359
AluBI AGCT 3 cut(s) 10, 322, 403
AluI AGCT 3 cut(s) 10, 322, 403
AlwI GGATC 1 cut(s) 250
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 1 cut(s) 377
AspS9I GGNCC 1 cut(s) 364
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 273
BclI TGATCA 1 cut(s) 418
BfaI CTAG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 364
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 364
BmiI GGNNCC 1 cut(s) 73
BmsI GCATC 2 cut(s) 39, 109
BsaJI CCNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 237
Bse3DI GCAATG 1 cut(s) 376
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 105, 136
BseMI GCAATG 1 cut(s) 376
BseNI ACTGG 1 cut(s) 237
BshFI GGCC 1 cut(s) 379
BsiHKCI CYCGRG 1 cut(s) 272
BsnI GGCC 1 cut(s) 379
BsoBI CYCGRG 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 273
Bsp1407I TGTACA 1 cut(s) 135
Bsp143I GATC 2 cut(s) 255, 418
BspACI CCGC 2 cut(s) 128, 367
BspANI GGCC 1 cut(s) 379
BspHI TCATGA 1 cut(s) 421
BspLI GGNNCC 1 cut(s) 73
BspPI GGATC 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 376
BsrGI TGTACA 1 cut(s) 135
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 2 cut(s) 255, 418
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 165, 300
BstAUI TGTACA 1 cut(s) 135
BstF5I GGATG 2 cut(s) 105, 136
BstKTI GATC 2 cut(s) 258, 421
BstMBI GATC 2 cut(s) 255, 418
BstMWI GCNNNNNNNGC 1 cut(s) 328
BstX2I RGATCY 1 cut(s) 255
BstYI RGATCY 1 cut(s) 255
BsuRI GGCC 1 cut(s) 379
BtsCI GGATG 2 cut(s) 105, 136
CciI TCATGA 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 364
Csp6I GTAC 3 cut(s) 136, 214, 307
CviAII CATG 3 cut(s) 66, 385, 422
CviJI RGCY 7 cut(s) 10, 89, 271, 322, 331, 379, 403
CviKI_1 RGCY 7 cut(s) 10, 89, 271, 322, 331, 379, 403
CviQI GTAC 3 cut(s) 136, 214, 307
DpnI GATC 2 cut(s) 257, 420
DpnII GATC 2 cut(s) 255, 418
EciI GGCGGA 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 273
Eco32I GATATC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 364
Eco88I CYCGRG 1 cut(s) 272
EcoRV GATATC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 3 cut(s) 69, 388, 425
FaiI YATR 9 cut(s) 27, 41, 67, 84, 86, 144, 243, 386, 423
FatI CATG 3 cut(s) 65, 384, 421
FbaI TGATCA 1 cut(s) 418
FokI GGATG 2 cut(s) 112, 143
FriOI GRGCYC 1 cut(s) 273
FspBI CTAG 1 cut(s) 92
HaeIII GGCC 1 cut(s) 379
Hin1II CATG 3 cut(s) 69, 388, 425
HinfI GANTC 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 136
Hpy188III TCNNGA 4 cut(s) 92, 274, 359, 422
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 3 cut(s) 42, 260, 320
HpyCH4III ACNGT 2 cut(s) 165, 300
HpyCH4V TGCA 3 cut(s) 43, 225, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 328
Hsp92II CATG 3 cut(s) 69, 388, 425
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 2 cut(s) 255, 418
LmnI GCTCC 1 cut(s) 400
LpnPI CCDG 4 cut(s) 88, 122, 143, 218
LweI GCATC 2 cut(s) 39, 109
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 244, 340
MalI GATC 2 cut(s) 257, 420
MboI GATC 2 cut(s) 255, 418
MboII GAAGA 1 cut(s) 328
MflI RGATCY 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 2 cut(s) 114, 293
MnlI CCTC 2 cut(s) 71, 355
MseI TTAA 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 328
NdeII GATC 2 cut(s) 255, 418
NlaIII CATG 3 cut(s) 69, 388, 425
NlaIV GGNNCC 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 244
PaeR7I CTCGAG 1 cut(s) 272
PagI TCATGA 1 cut(s) 421
PfeI GAWTC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 73
PspPI GGNCC 1 cut(s) 364
PsuI RGATCY 1 cut(s) 255
RsaI GTAC 3 cut(s) 137, 215, 308
RsaNI GTAC 3 cut(s) 136, 214, 307
SaqAI TTAA 1 cut(s) 285
Sau3AI GATC 2 cut(s) 255, 418
Sau96I GGNCC 1 cut(s) 364
SduI GDGCHC 1 cut(s) 273
SetI ASST 6 cut(s) 12, 82, 111, 324, 396, 405
SfaNI GCATC 2 cut(s) 39, 109
Sfr274I CTCGAG 1 cut(s) 272
SinI GGWCC 1 cut(s) 364
SlaI CTCGAG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 2 cut(s) 114, 293
SsiI CCGC 2 cut(s) 128, 367
SspMI CTAG 1 cut(s) 92
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 2 cut(s) 165, 300
TaqI TCGA 4 cut(s) 185, 197, 273, 324
TasI AATT 2 cut(s) 114, 293
TatI WGTACW 3 cut(s) 135, 213, 306
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 2 cut(s) 119, 350
VpaK11BI GGWCC 1 cut(s) 364
XbaI TCTAGA 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XhoI CTCGAG 1 cut(s) 272
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.