RchiOBHm_Chr6g0308541

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000166
Physical Location & Seq
Forward (+)
66602638 .. 66603271
634 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27744

Sequence Viewer

Length: 633 bp
ATGGAGCATGGTTCCTTGGCACAAAATTTAGCTTCTAATGGGCTTGATTGGGAGAAGAGGTTTGACATTGCTGTCGGCACTGCAAAGGGTCTAGCTTATTTGCACGAAGAGTGCTTGGAGTGGGTTCTACATTGTGATGTAAAGCCTCAAAACATACTGTTGGACTCCAATTTTCAACCAAAGGTTGCAGATTTCGGGCTCTCCAAGATTCTTAACAGAGATGAGCTTAGGAATTCAACCTTTTCGAGGATACGAGGAACCAGAGGTTACATTGCTCCGGAGTGGGTGTATAATCTTCCCATCACATCCAAAGTGGATGTATACAGCTATGGAGTGGTTGTGTTGGAGATGGTGACCGGAAAGAACCCGACAATGGGTGTGGAAATCAGTGATGGTGAGCAGAGAAGACTAATTATGTGGGTGAGGGAGAAACTAAATGGAACTGAAATTGCATCCAGAATCGGAGAGATCATAGATCCCTCGTTTGATGAAGGCAACTATGATGTGGAAAAGATGGAAATTTTGTTAACAGTAGCTTTACATTGTGTGGAAGAAGACAAAGATTCAAGACCAACCATGAGTCAAGTCGTTGAGATGCTTCAACACCACGGCAAAGAATCTCAGTGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

210

Amino Acids

23.91

Weight (kDa)

5.01

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 200 1.2e-23 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 198 9.3e-33 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 321
AccIII TCCGGA 1 cut(s) 277
AclWI GGATC 1 cut(s) 470
AcsI RAATTY 3 cut(s) 25, 232, 519
AfiI CCNNNNNNNGG 3 cut(s) 246, 373, 374
AgsI TTSAA 4 cut(s) 176, 237, 567, 602
AluBI AGCT 5 cut(s) 32, 95, 226, 327, 536
AluI AGCT 5 cut(s) 32, 95, 226, 327, 536
AlwI GGATC 1 cut(s) 470
Aor13HI TCCGGA 1 cut(s) 277
ApoI RAATTY 3 cut(s) 25, 232, 519
AsuHPI GGTGA 3 cut(s) 364, 407, 433
BanII GRGCYC 1 cut(s) 201
BbsI GAAGAC 2 cut(s) 412, 561
BccI CCATC 4 cut(s) 308, 343, 386, 508
BceAI ACGGC 1 cut(s) 625
BciVI GTATCC 1 cut(s) 243
BfaI CTAG 1 cut(s) 92
BfuI GTATCC 1 cut(s) 243
BmiI GGNNCC 2 cut(s) 13, 259
BmsI GCATC 2 cut(s) 461, 585
BpiI GAAGAC 2 cut(s) 412, 561
Bpu10I CCTNAGC 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 15, 607
BsaWI WCCGGW 2 cut(s) 277, 356
BsaXI ACNNNNNCTCC 6 cut(s) 44, 74, 272, 302, 324, 354
Bsc4I CCNNNNNNNGG 3 cut(s) 246, 373, 374
Bse3DI GCAATG 2 cut(s) 66, 270
BseAI TCCGGA 1 cut(s) 277
BseDI CCNNGG 2 cut(s) 15, 607
BseGI GGATG 3 cut(s) 305, 322, 452
BseLI CCNNNNNNNGG 3 cut(s) 246, 373, 374
BseMI GCAATG 2 cut(s) 66, 270
BsiSI CCGG 2 cut(s) 278, 357
BslI CCNNNNNNNGG 3 cut(s) 246, 373, 374
Bsp1286I GDGCHC 1 cut(s) 201
Bsp13I TCCGGA 1 cut(s) 277
Bsp143I GATC 2 cut(s) 468, 475
BspEI TCCGGA 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 13, 259
BspPI GGATC 1 cut(s) 470
BsrDI GCAATG 2 cut(s) 66, 270
BssECI CCNNGG 2 cut(s) 15, 607
BssMI GATC 2 cut(s) 468, 475
BssNAI GTATAC 1 cut(s) 322
BssT1I CCWWGG 1 cut(s) 15
Bst1107I GTATAC 1 cut(s) 322
Bst4CI ACNGT 2 cut(s) 159, 532
Bst6I CTCTTC 2 cut(s) 50, 102
BstDEI CTNAG 2 cut(s) 227, 621
BstDSI CCRYGG 1 cut(s) 607
BstEII GGTNACC 1 cut(s) 352
BstENI CCTNNNNNAGG 1 cut(s) 244
BstF5I GGATG 3 cut(s) 305, 322, 452
BstKTI GATC 2 cut(s) 471, 478
BstMBI GATC 2 cut(s) 468, 475
BstPI GGTNACC 1 cut(s) 352
BstV2I GAAGAC 2 cut(s) 412, 561
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BstZ17I GTATAC 1 cut(s) 322
BsuI GTATCC 1 cut(s) 243
BtgI CCRYGG 1 cut(s) 607
BtsCI GGATG 3 cut(s) 305, 322, 452
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 3 cut(s) 78, 394, 629
CspCI CAANNNNNGTGG 2 cut(s) 360, 395
CviAII CATG 2 cut(s) 8, 577
CviJI RGCY 8 cut(s) 32, 43, 95, 145, 199, 226, 327, 536
CviKI_1 RGCY 8 cut(s) 32, 43, 95, 145, 199, 226, 327, 536
DdeI CTNAG 2 cut(s) 227, 621
DpnI GATC 2 cut(s) 470, 477
DpnII GATC 2 cut(s) 468, 475
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
Eam1104I CTCTTC 2 cut(s) 50, 102
EarI CTCTTC 2 cut(s) 50, 102
Eco130I CCWWGG 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 201
Eco91I GGTNACC 1 cut(s) 352
EcoNI CCTNNNNNAGG 1 cut(s) 244
EcoO65I GGTNACC 1 cut(s) 352
EcoRI GAATTC 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 2 cut(s) 11, 580
FaiI YATR 9 cut(s) 9, 155, 291, 322, 330, 416, 473, 501, 578
FatI CATG 2 cut(s) 7, 576
FblI GTMKAC 1 cut(s) 321
FokI GGATG 3 cut(s) 292, 329, 439
FriOI GRGCYC 1 cut(s) 201
FspBI CTAG 1 cut(s) 92
HapII CCGG 2 cut(s) 278, 357
Hin1II CATG 2 cut(s) 11, 580
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HinfI GANTC 6 cut(s) 164, 208, 459, 563, 580, 617
HpaI GTTAAC 1 cut(s) 528
HpaII CCGG 2 cut(s) 278, 357
HphI GGTGA 3 cut(s) 364, 407, 433
Hpy166II GTNNAC 2 cut(s) 322, 528
Hpy188I TCNGA 1 cut(s) 464
Hpy188III TCNNGA 3 cut(s) 278, 456, 567
Hpy8I GTNNAC 2 cut(s) 322, 528
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 2 cut(s) 159, 532
HpyCH4V TGCA 4 cut(s) 83, 103, 188, 452
HpyF3I CTNAG 2 cut(s) 227, 621
Hsp92II CATG 2 cut(s) 11, 580
Kpn2I TCCGGA 1 cut(s) 277
KspAI GTTAAC 1 cut(s) 528
Kzo9I GATC 2 cut(s) 468, 475
LmnI GCTCC 2 cut(s) 4, 280
LpnPI CCDG 4 cut(s) 274, 291, 370, 469
LweI GCATC 2 cut(s) 461, 585
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 266, 352
MalI GATC 2 cut(s) 470, 477
MboI GATC 2 cut(s) 468, 475
MboII GAAGA 6 cut(s) 67, 119, 287, 417, 563, 566
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 6 cut(s) 25, 169, 232, 411, 447, 519
MlyI GAGTC 2 cut(s) 158, 589
MmeI TCCRAC 2 cut(s) 141, 324
MnlI CCTC 7 cut(s) 51, 156, 240, 248, 257, 417, 490
MroI TCCGGA 1 cut(s) 277
MseI TTAA 2 cut(s) 213, 527
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 2 cut(s) 278, 357
NdeII GATC 2 cut(s) 468, 475
NlaIII CATG 2 cut(s) 11, 580
NlaIV GGNNCC 2 cut(s) 13, 259
NmuCI GTSAC 1 cut(s) 352
PfeI GAWTC 4 cut(s) 208, 459, 563, 617
PleI GAGTC 2 cut(s) 158, 588
PpsI GAGTC 2 cut(s) 158, 588
PspEI GGTNACC 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 13, 259
PsuI RGATCY 1 cut(s) 475
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 2 cut(s) 213, 527
Sau3AI GATC 2 cut(s) 468, 475
SchI GAGTC 2 cut(s) 158, 589
SduI GDGCHC 1 cut(s) 201
SetI ASST 9 cut(s) 34, 62, 97, 186, 228, 242, 268, 329, 538
SfaNI GCATC 2 cut(s) 461, 585
SmiMI CAYNNNNRTG 1 cut(s) 135
Sse9I AATT 6 cut(s) 25, 169, 232, 411, 447, 519
SspMI CTAG 1 cut(s) 92
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 2 cut(s) 159, 532
TaqI TCGA 1 cut(s) 245
TasI AATT 6 cut(s) 25, 169, 232, 411, 447, 519
TfiI GAWTC 4 cut(s) 208, 459, 563, 617
Tru1I TTAA 2 cut(s) 213, 527
Tru9I TTAA 2 cut(s) 213, 527
TscAI CASTG 3 cut(s) 85, 394, 629
TseFI GTSAC 1 cut(s) 352
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 504
TspRI CASTG 3 cut(s) 85, 394, 629
XagI CCTNNNNNAGG 1 cut(s) 244
XapI RAATTY 3 cut(s) 25, 232, 519
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.