MD04G1137300.v1.1

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000166
Physical Location & Seq
Forward (+)
22477789 .. 22478133
345 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1137300.v1.1.491

Sequence Viewer

Length: 345 bp
ATGGCTCCCGAGTGGGCTCTAAACCATCCAATCACTGCAAAAGTGGATGTTTATGGTTATGGAGTGGTAATTCTAGAGATAGTTAAGGGCATTCGCCTTTCAAGTTGGGCAGTTGAAGACACTGATGATCAAGAGTCGGAGTTGACAAGGTTCGTGAGGGTAGCCAAGAGGAAAATTCATTCTGGGAAGGATCTGTGGATCAAGCATGTGATGGATCAAAGGCTGCAAGGGCAGTTCAGTAGGATCCAAGTAGCAAAGATGGTTAAGATTGGGATTTCCTGTGTGGAGGAAGAGGAGCAAAAGACCAACCATGGATTCAGTAGTAAATTTTTTACTAGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

115

Amino Acids

13.15

Weight (kDa)

8.76

Isoelectric Point (pI)

33.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 5 cut(s) 198, 206, 222, 238, 251
AcsI RAATTY 2 cut(s) 174, 326
AgsI TTSAA 2 cut(s) 102, 116
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AlwI GGATC 5 cut(s) 198, 206, 222, 238, 251
Ama87I CYCGRG 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 223
ApoI RAATTY 2 cut(s) 174, 326
AvaI CYCGRG 1 cut(s) 8
BamHI GGATCC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 210
BccI CCATC 3 cut(s) 33, 205, 253
BclI TGATCA 1 cut(s) 127
BfaI CTAG 2 cut(s) 74, 336
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
BmeT110I CYCGRG 1 cut(s) 8
BmiI GGNNCC 2 cut(s) 6, 245
BpiI GAAGAC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 2 cut(s) 25, 52
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 8
BsmI GAATGC 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 5 cut(s) 127, 190, 198, 214, 243
Bsp19I CCATGG 1 cut(s) 310
BspLI GGNNCC 2 cut(s) 6, 245
BspPI GGATC 5 cut(s) 198, 206, 222, 238, 251
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 5 cut(s) 127, 190, 198, 214, 243
BssT1I CCWWGG 1 cut(s) 310
Bst6I CTCTTC 1 cut(s) 285
BstDSI CCRYGG 1 cut(s) 310
BstF5I GGATG 2 cut(s) 25, 52
BstKTI GATC 5 cut(s) 130, 193, 201, 217, 246
BstMBI GATC 5 cut(s) 127, 190, 198, 214, 243
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNSI RCATGY 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 2 cut(s) 190, 243
BstYI RGATCY 2 cut(s) 190, 243
BtgI CCRYGG 1 cut(s) 310
BtsCI GGATG 2 cut(s) 25, 52
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 33, 120
CviAII CATG 2 cut(s) 206, 311
CviJI RGCY 4 cut(s) 5, 17, 164, 223
CviKI_1 RGCY 4 cut(s) 5, 17, 164, 223
DpnI GATC 5 cut(s) 129, 192, 200, 216, 245
DpnII GATC 5 cut(s) 127, 190, 198, 214, 243
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 310
EcoT38I GRGCYC 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 2 cut(s) 209, 314
FaiI YATR 4 cut(s) 54, 60, 207, 312
FatI CATG 2 cut(s) 205, 310
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 2 cut(s) 12, 59
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 2 cut(s) 74, 336
GluI GCNGC 1 cut(s) 224
Hin1II CATG 2 cut(s) 209, 314
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 2 cut(s) 134, 315
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 4 cut(s) 8, 74, 131, 154
Hpy8I GTNNAC 1 cut(s) 144
HpyAV CCTTC 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 38, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
Hsp92II CATG 2 cut(s) 209, 314
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 5 cut(s) 127, 190, 198, 214, 243
LmnI GCTCC 2 cut(s) 10, 295
LpnPI CCDG 2 cut(s) 168, 292
Lsp1109I GCAGC 1 cut(s) 210
MaeI CTAG 2 cut(s) 74, 336
MalI GATC 5 cut(s) 129, 192, 200, 216, 245
MboI GATC 5 cut(s) 127, 190, 198, 214, 243
MboII GAAGA 2 cut(s) 128, 302
MflI RGATCY 2 cut(s) 190, 243
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 3 cut(s) 69, 174, 326
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 4 cut(s) 150, 162, 280, 286
MseI TTAA 2 cut(s) 84, 264
Mva1269I GAATGC 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 229
NcoI CCATGG 1 cut(s) 310
NdeII GATC 5 cut(s) 127, 190, 198, 214, 243
NlaIII CATG 2 cut(s) 209, 314
NlaIV GGNNCC 2 cut(s) 6, 245
NspI RCATGY 1 cut(s) 209
PctI GAATGC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 315
PkrI GCNGC 1 cut(s) 225
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 6, 245
PsuI RGATCY 2 cut(s) 190, 243
SaqAI TTAA 2 cut(s) 84, 264
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 5 cut(s) 127, 190, 198, 214, 243
SchI GAGTC 1 cut(s) 143
SduI GDGCHC 1 cut(s) 19
SetI ASST 1 cut(s) 152
Sse9I AATT 3 cut(s) 69, 174, 326
SspMI CTAG 2 cut(s) 74, 336
StyI CCWWGG 1 cut(s) 310
TasI AATT 3 cut(s) 69, 174, 326
TfiI GAWTC 1 cut(s) 315
Tru1I TTAA 2 cut(s) 84, 264
Tru9I TTAA 2 cut(s) 84, 264
TscAI CASTG 2 cut(s) 40, 127
TseI GCWGC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 167
TspRI CASTG 2 cut(s) 40, 127
XapI RAATTY 2 cut(s) 174, 326
XbaI TCTAGA 1 cut(s) 73
XceI RCATGY 1 cut(s) 209
XspI CTAG 2 cut(s) 74, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.