Rroxscaffold_7G00160030

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000166
Physical Location & Seq
Reverse (-)
3053980 .. 3056072
2093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00160030.1

Sequence Viewer

Length: 336 bp
ATGAAAGAACCCGACAATGGATGTGGAAATCGGTCTTTGGTGAGCGAGAGAAGACTAATTATGTGGGTGAGGGAGAAACTAAATGGAACCGAAATTGCGTCCAGAATCGGAGAGATCATAGATCCCTCGTTTGAAGGCAACTATGATGTGGAAAAGATGGAAATTTTGTTAACGGTAGATTTACATTGTGTGGAAGAAGACAAAGATTCAAGACCAACCATGAGTCAAGTCGTTGAGATGCTTCGACACCACGGCAAAGAATCTCGGAGACTGGGAATTCTGGAAAAAGATGGTTGGAAGTTAATTTGCAGTCGGCATCAGACATTCATTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

111

Amino Acids

12.88

Weight (kDa)

5.81

Isoelectric Point (pI)

59.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 116
AcsI RAATTY 2 cut(s) 162, 276
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 2 cut(s) 134, 210
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 1 cut(s) 116
ApoI RAATTY 2 cut(s) 162, 276
AsuHPI GGTGA 2 cut(s) 52, 79
BbsI GAAGAC 2 cut(s) 58, 204
BccI CCATC 2 cut(s) 151, 284
BceAI ACGGC 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 88
BmrI ACTGGG 1 cut(s) 281
BmsI GCATC 2 cut(s) 228, 325
BmuI ACTGGG 1 cut(s) 281
BpiI GAAGAC 2 cut(s) 58, 204
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 17
BseNI ACTGG 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 262
Bsp143I GATC 2 cut(s) 114, 121
BspLI GGNNCC 1 cut(s) 88
BspPI GGATC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 114, 121
Bst4CI ACNGT 1 cut(s) 175
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 26
BstKTI GATC 2 cut(s) 117, 124
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 2 cut(s) 114, 121
BstV2I GAAGAC 2 cut(s) 58, 204
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 1 cut(s) 26
CseI GACGC 1 cut(s) 87
CspCI CAANNNNNGTGG 2 cut(s) 4, 39
CviAII CATG 2 cut(s) 220, 333
DpnI GATC 2 cut(s) 116, 123
DpnII GATC 2 cut(s) 114, 121
EcoRI GAATTC 1 cut(s) 276
FaeI CATG 2 cut(s) 223, 336
FaiI YATR 5 cut(s) 62, 119, 144, 221, 334
FatI CATG 2 cut(s) 219, 332
FokI GGATG 1 cut(s) 33
HgaI GACGC 1 cut(s) 87
Hin1II CATG 2 cut(s) 223, 336
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 4 cut(s) 105, 206, 223, 260
HpaI GTTAAC 1 cut(s) 171
HphI GGTGA 2 cut(s) 52, 79
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 3 cut(s) 110, 267, 321
Hpy188III TCNNGA 3 cut(s) 102, 210, 281
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 309
Hsp92II CATG 2 cut(s) 223, 336
KspAI GTTAAC 1 cut(s) 171
Kzo9I GATC 2 cut(s) 114, 121
LpnPI CCDG 3 cut(s) 115, 257, 266
LweI GCATC 2 cut(s) 228, 325
MalI GATC 2 cut(s) 116, 123
MboI GATC 2 cut(s) 114, 121
MboII GAAGA 3 cut(s) 63, 206, 209
MflI RGATCY 1 cut(s) 121
MluCI AATT 5 cut(s) 57, 93, 162, 276, 303
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 275
MnlI CCTC 2 cut(s) 63, 136
MseI TTAA 2 cut(s) 170, 302
NdeII GATC 2 cut(s) 114, 121
NlaIII CATG 2 cut(s) 223, 336
NlaIV GGNNCC 1 cut(s) 88
PfeI GAWTC 3 cut(s) 105, 206, 260
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 88
PsuI RGATCY 1 cut(s) 121
SaqAI TTAA 2 cut(s) 170, 302
Sau3AI GATC 2 cut(s) 114, 121
SchI GAGTC 1 cut(s) 232
SfaNI GCATC 2 cut(s) 228, 325
Sse9I AATT 5 cut(s) 57, 93, 162, 276, 303
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 244
TaqII GACCGA 1 cut(s) 21
TasI AATT 5 cut(s) 57, 93, 162, 276, 303
TfiI GAWTC 3 cut(s) 105, 206, 260
Tru1I TTAA 2 cut(s) 170, 302
Tru9I TTAA 2 cut(s) 170, 302
TspDTI ATGAA 2 cut(s) 17, 316
XapI RAATTY 2 cut(s) 162, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.