Rmu_sc0004362.1_g000025

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004362.1
OG0000166
Physical Location & Seq
Forward (+)
94551 .. 94982
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004362.1_g000025.1.cds

Sequence Viewer

Length: 432 bp
atggaagttcccaagtttattcttgttttgctatttgcagcaacctttgcttggagtcgagcacagttagaagggatgccaagcttaaagcaagggaactccttgaaagttgaggaagagagcaacttcttggtttcaccaaatggaaccttttcgaacggattttacaaagttggcgccaatgcctcctgttattcaatatggttcacaaatagtgccgacaaaacagttgtttggatgcctaatcgagataagcctgtcagcgaaagacgctcgaagctaaccctccatggaaatggcaacctggttttgactgatgcactaggttcggttgtgtggtcaaccaacacaatctctaaggaagacatggaacttcagcttcttgaaacaggaaacttggtgctgaggaaccaagacgacaagatcatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

143

Amino Acids

15.93

Weight (kDa)

5.82

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AcuI CTGAAG 1 cut(s) 359
AcyI GRCGYC 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 3 cut(s) 106, 198, 386
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 3 cut(s) 84, 280, 379
AluI AGCT 3 cut(s) 84, 280, 379
Alw21I GWGCWC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 151
AspLEI GCGC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 129
AsuII TTCGAA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 64
BbvCI CCTCAGC 1 cut(s) 404
BbvI GCAGC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 309, 343
BciT130I CCWGG 1 cut(s) 305
BfaI CTAG 2 cut(s) 323, 430
BfoI RGCGCY 1 cut(s) 180
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 305
BmiI GGNNCC 3 cut(s) 148, 178, 410
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 3 cut(s) 66, 228, 307
BpiI GAAGAC 1 cut(s) 369
Bpu10I CCTNAGC 1 cut(s) 404
Bpu14I TTCGAA 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 1 cut(s) 51
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 2 cut(s) 81, 243
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 395
BseXI GCAGC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 176
BsiHKAI GWGCWC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 51
Bsp119I TTCGAA 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 423
Bsp19I CCATGG 1 cut(s) 289
BspCNI CTCAG 1 cut(s) 396
BspLI GGNNCC 3 cut(s) 148, 178, 410
BspT104I TTCGAA 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 1 cut(s) 423
BssNI GRCGYC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 2 cut(s) 66, 229
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 155
BstDEI CTNAG 2 cut(s) 357, 404
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 2 cut(s) 81, 243
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 1 cut(s) 426
BstMBI GATC 1 cut(s) 423
BstMWI GCNNNNNNNGC 2 cut(s) 47, 270
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 369
BstXI CCANNNNNNTGG 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 2 cut(s) 81, 243
CfoI GCGC 1 cut(s) 179
CseI GACGC 1 cut(s) 279
CsiI ACCWGGT 1 cut(s) 303
CviAII CATG 2 cut(s) 290, 367
CviJI RGCY 4 cut(s) 84, 256, 280, 379
CviKI_1 RGCY 4 cut(s) 84, 256, 280, 379
DdeI CTNAG 2 cut(s) 357, 404
DinI GGCGCC 1 cut(s) 178
DpnI GATC 1 cut(s) 425
DpnII GATC 1 cut(s) 423
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 289
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 2 cut(s) 293, 370
FaiI YATR 3 cut(s) 202, 291, 368
FatI CATG 2 cut(s) 289, 366
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 2 cut(s) 88, 250
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 2 cut(s) 323, 430
GlaI GCGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 39
HaeII RGCGCY 1 cut(s) 180
HgaI GACGC 1 cut(s) 279
HhaI GCGC 1 cut(s) 179
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 2 cut(s) 293, 370
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HindIII AAGCTT 1 cut(s) 82
HinfI GANTC 1 cut(s) 55
HphI GGTGA 1 cut(s) 129
Hpy166II GTNNAC 2 cut(s) 207, 342
Hpy188III TCNNGA 2 cut(s) 248, 383
Hpy8I GTNNAC 2 cut(s) 207, 342
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 2 cut(s) 66, 229
HpyCH4V TGCA 2 cut(s) 38, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 270
HpyF3I CTNAG 2 cut(s) 357, 404
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 2 cut(s) 293, 370
HspAI GCGC 1 cut(s) 177
KasI GGCGCC 1 cut(s) 176
Kzo9I GATC 1 cut(s) 423
LpnPI CCDG 5 cut(s) 202, 270, 290, 317, 375
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 3 cut(s) 66, 228, 307
MabI ACCWGGT 1 cut(s) 303
MaeI CTAG 2 cut(s) 323, 430
MalI GATC 1 cut(s) 425
MboI GATC 1 cut(s) 423
MboII GAAGA 2 cut(s) 128, 374
MhlI GDGCHC 1 cut(s) 64
Mly113I GGCGCC 1 cut(s) 177
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 4 cut(s) 106, 196, 296, 399
MroXI GAANNNNTTC 1 cut(s) 151
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 2 cut(s) 47, 270
NarI GGCGCC 1 cut(s) 177
NcoI CCATGG 1 cut(s) 289
NdeII GATC 1 cut(s) 423
NlaIII CATG 2 cut(s) 293, 370
NlaIV GGNNCC 3 cut(s) 148, 178, 410
NspV TTCGAA 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 63
PluTI GGCGCC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 3 cut(s) 148, 178, 410
PsrI GAACNNNNNNTAC 2 cut(s) 149, 181
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 423
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 64
SetI ASST 7 cut(s) 47, 86, 152, 282, 306, 328, 381
SexAI ACCWGGT 1 cut(s) 303
SfaNI GCATC 3 cut(s) 66, 228, 307
SfoI GGCGCC 1 cut(s) 178
SfuI TTCGAA 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 294
SspDI GGCGCC 1 cut(s) 176
SspMI CTAG 2 cut(s) 323, 430
StyD4I CCNGG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 2 cut(s) 66, 229
TaqI TCGA 4 cut(s) 58, 155, 247, 275
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TseI GCWGC 1 cut(s) 38
TspGWI ACGGA 1 cut(s) 174
XmnI GAANNNNTTC 1 cut(s) 151
XspI CTAG 2 cut(s) 323, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.