RchiOBHm_Chr3g0464981

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000166
Physical Location & Seq
Reverse (-)
11907064 .. 11907984
921 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43116

Sequence Viewer

Length: 921 bp
ATGAAATACCTCATTGGATTTTTGAGTTCCTTTGGGCTAATTGAAGCAATCGGCATCAGTTTGACATGGTGGTTTGTGTTCCGAAAGCAAGCTCGTGACGAAATGATGAACATGGGGTACATGGCATTAGCCATAAATGCTGTGGGATTCAAAAGTTTCACCTATGCAGAACTAAAGAAAGCAACCAATGACTTCAAACAGGAGATAGGAAAAGGGGGGTTCGGCACAGTCTATAAAGGGGTTCTGGATGGTGACAGAGTTGTAGCTGTGAAGAGACTAGAAGGCATTGTACAAGGAGATGCAGAGTTTTGGGCAGAGGTTAGTGTGATAGGGAATATCAACCACAGGAACTTGGTTAAGCTTTGGGGTTTCTGTGCTGAGAATGAACATAAGCTGTTGGTATATGAGTATCTGGAGAATGGATCCTTGGATAAACTCTTGTTTTCTGATGTTGAATTAGGATTGGAGCAGCGATACAATATTGCATTAGGCACTGCAAAGGGTTTGTCATATCTACATGAGGAGTGTCTGGAATGGGTACTCCACTGTGATGTAAAGCCTCAAAATATACTGTTAGGTGACCATCTTGAACCTAAGGTGGCAGATTTTGGCATGTCAAAGTTATTCAAAGTCAACATTGATGATGCAGGCATTGGATTTTCCAGAGTTCGAGGCACCAGAGGTTATATGGCTCCAGAGTGGATGGTGAACCTTAAAATTGATGCAAAGGCAGATGTCTACAGCTATGGGATTGTTTTGTTGGAGCTACTGAGTGGAAAGAGTGCATCTATTCTACTTTCAGCTTTTGCACAAGAGTACACTGAGCACAACCAACCAATGTTTTCAAAGGCGATTCCGGTGCGCGCACTGGGCGAGCTTCGGTGTGAAGCGACCGGAAATCGCCTCGCTAGTCCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

306

Amino Acids

34.21

Weight (kDa)

5.93

Isoelectric Point (pI)

25.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 65 - 261 3e-39 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 66 - 261 3.7e-46 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 674
AccI GTMKAC 1 cut(s) 738
AccII CGCG 1 cut(s) 864
AclWI GGATC 2 cut(s) 417, 430
AfaI GTAC 4 cut(s) 119, 291, 540, 818
AgsI TTSAA 7 cut(s) 44, 151, 196, 455, 590, 628, 846
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AluBI AGCT 8 cut(s) 92, 266, 361, 394, 744, 766, 803, 877
AluI AGCT 8 cut(s) 92, 266, 361, 394, 744, 766, 803, 877
Alw21I GWGCWC 1 cut(s) 828
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 2 cut(s) 417, 430
ApeKI GCWGC 1 cut(s) 469
ArsI GACNNNNNNTTYG 2 cut(s) 491, 523
AspLEI GCGC 2 cut(s) 864, 866
AsuHPI GGTGA 4 cut(s) 151, 263, 590, 718
AxyI CCTNAGG 1 cut(s) 594
BamHI GGATCC 1 cut(s) 422
BanI GGYRCC 1 cut(s) 674
BarI GAAGNNNNNNTAC 2 cut(s) 273, 305
BauI CACGAG 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 828
BbvI GCAGC 1 cut(s) 481
BccI CCATC 3 cut(s) 242, 591, 697
BcgI CGANNNNNNTGC 2 cut(s) 841, 875
BcoDI GTCTC 1 cut(s) 268
BfaI CTAG 3 cut(s) 278, 909, 919
BfmI CTRYAG 1 cut(s) 739
BisI GCNGC 1 cut(s) 470
BlsI GCNGC 1 cut(s) 471
BmiI GGNNCC 3 cut(s) 424, 676, 693
BmrI ACTGGG 1 cut(s) 878
BmsI GCATC 5 cut(s) 63, 289, 634, 712, 794
BmuI ACTGGG 1 cut(s) 878
BpmI CTGGAG 2 cut(s) 434, 678
BsaJI CCNNGG 1 cut(s) 426
BsaWI WCCGGW 2 cut(s) 856, 893
Bse1I ACTGG 1 cut(s) 873
Bse21I CCTNAGG 1 cut(s) 594
BseDI CCNNGG 1 cut(s) 426
BseGI GGATG 2 cut(s) 253, 708
BseMII CTCAG 3 cut(s) 369, 761, 813
BseNI ACTGG 1 cut(s) 873
BsePI GCGCGC 1 cut(s) 862
BseRI GAGGAG 1 cut(s) 536
BseXI GCAGC 1 cut(s) 481
Bsh1236I CGCG 1 cut(s) 864
Bsh1285I CGRYCG 1 cut(s) 894
BshNI GGYRCC 1 cut(s) 674
BsiEI CGRYCG 1 cut(s) 894
BsiHKAI GWGCWC 1 cut(s) 828
BsiSI CCGG 2 cut(s) 857, 894
BsmAI GTCTC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 828
Bsp1407I TGTACA 1 cut(s) 289
Bsp143I GATC 1 cut(s) 422
BspCNI CTCAG 3 cut(s) 370, 762, 814
BspFNI CGCG 1 cut(s) 864
BspLI GGNNCC 3 cut(s) 424, 676, 693
BspPI GGATC 2 cut(s) 417, 430
BspT107I GGYRCC 1 cut(s) 674
BsrGI TGTACA 1 cut(s) 289
BsrI ACTGG 1 cut(s) 873
BssECI CCNNGG 1 cut(s) 426
BssHII GCGCGC 1 cut(s) 862
BssMI GATC 1 cut(s) 422
BssSI CACGAG 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 426
Bst2BI CACGAG 1 cut(s) 93
Bst4CI ACNGT 3 cut(s) 229, 548, 573
Bst6I CTCTTC 1 cut(s) 266
BstAUI TGTACA 1 cut(s) 289
BstC8I GCNNGC 4 cut(s) 90, 649, 864, 875
BstDEI CTNAG 4 cut(s) 378, 594, 770, 822
BstEII GGTNACC 1 cut(s) 578
BstF5I GGATG 2 cut(s) 253, 708
BstFNI CGCG 1 cut(s) 864
BstHHI GCGC 2 cut(s) 864, 866
BstKTI GATC 1 cut(s) 425
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 1 cut(s) 422
BstMCI CGRYCG 1 cut(s) 894
BstMWI GCNNNNNNNGC 2 cut(s) 137, 870
BstNSI RCATGY 1 cut(s) 616
BstPI GGTNACC 1 cut(s) 578
BstSFI CTRYAG 1 cut(s) 739
BstUI CGCG 1 cut(s) 864
BstV1I GCAGC 1 cut(s) 481
BstX2I RGATCY 1 cut(s) 422
BstYI RGATCY 1 cut(s) 422
Bsu36I CCTNAGG 1 cut(s) 594
BtsCI GGATG 2 cut(s) 253, 708
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 4 cut(s) 492, 544, 819, 866
Cac8I GCNNGC 4 cut(s) 90, 649, 864, 875
CfoI GCGC 2 cut(s) 864, 866
Csp6I GTAC 4 cut(s) 118, 290, 539, 817
CviAII CATG 5 cut(s) 66, 112, 121, 518, 613
CviQI GTAC 4 cut(s) 118, 290, 539, 817
DdeI CTNAG 4 cut(s) 378, 594, 770, 822
DpnI GATC 1 cut(s) 424
DpnII GATC 1 cut(s) 422
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 426
Eco81I CCTNAGG 1 cut(s) 594
Eco91I GGTNACC 1 cut(s) 578
EcoO65I GGTNACC 1 cut(s) 578
EcoT14I CCWWGG 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 5 cut(s) 69, 115, 124, 521, 616
FatI CATG 5 cut(s) 65, 111, 120, 517, 612
FblI GTMKAC 1 cut(s) 738
Fnu4HI GCNGC 1 cut(s) 470
FokI GGATG 2 cut(s) 260, 715
Fsp4HI GCNGC 1 cut(s) 470
FspBI CTAG 3 cut(s) 278, 909, 919
GlaI GCGC 2 cut(s) 863, 865
GluI GCNGC 1 cut(s) 470
GsuI CTGGAG 2 cut(s) 434, 678
HapII CCGG 2 cut(s) 857, 894
HhaI GCGC 2 cut(s) 864, 866
Hin1II CATG 5 cut(s) 69, 115, 124, 521, 616
Hin6I GCGC 2 cut(s) 862, 864
HinP1I GCGC 2 cut(s) 862, 864
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 2 cut(s) 147, 853
HpaII CCGG 2 cut(s) 857, 894
HphI GGTGA 4 cut(s) 151, 263, 590, 718
Hpy166II GTNNAC 4 cut(s) 634, 709, 739, 819
Hpy188I TCNGA 2 cut(s) 83, 448
Hpy188III TCNNGA 7 cut(s) 95, 245, 413, 530, 587, 663, 695
Hpy8I GTNNAC 4 cut(s) 634, 709, 739, 819
HpyAV CCTTC 1 cut(s) 275
HpyCH4III ACNGT 3 cut(s) 229, 548, 573
HpyCH4V TGCA 8 cut(s) 167, 302, 485, 497, 647, 725, 785, 809
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 870
HpyF3I CTNAG 4 cut(s) 378, 594, 770, 822
Hsp92II CATG 5 cut(s) 69, 115, 124, 521, 616
HspAI GCGC 2 cut(s) 862, 864
Kzo9I GATC 1 cut(s) 422
LmnI GCTCC 3 cut(s) 466, 697, 763
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 5 cut(s) 63, 289, 634, 712, 794
MaeI CTAG 3 cut(s) 278, 909, 919
MaeIII GTNAC 3 cut(s) 95, 251, 578
MalI GATC 1 cut(s) 424
MboI GATC 1 cut(s) 422
MboII GAAGA 1 cut(s) 283
MflI RGATCY 1 cut(s) 422
MhlI GDGCHC 1 cut(s) 828
MluCI AATT 3 cut(s) 39, 455, 717
MmeI TCCRAC 1 cut(s) 741
MnlI CCTC 7 cut(s) 20, 310, 514, 570, 665, 674, 914
MseI TTAA 2 cut(s) 357, 714
MslI CAYNNNNRTG 1 cut(s) 549
MspI CCGG 2 cut(s) 857, 894
MvnI CGCG 1 cut(s) 864
MwoI GCNNNNNNNGC 2 cut(s) 137, 870
NdeII GATC 1 cut(s) 422
NlaIII CATG 5 cut(s) 69, 115, 124, 521, 616
NlaIV GGNNCC 3 cut(s) 424, 676, 693
NmuCI GTSAC 3 cut(s) 95, 251, 578
NspI RCATGY 1 cut(s) 616
PauI GCGCGC 1 cut(s) 862
PfeI GAWTC 2 cut(s) 147, 853
PkrI GCNGC 1 cut(s) 471
PspEI GGTNACC 1 cut(s) 578
PspN4I GGNNCC 3 cut(s) 424, 676, 693
PsrI GAACNNNNNNTAC 2 cut(s) 101, 133
PsuI RGATCY 1 cut(s) 422
PteI GCGCGC 1 cut(s) 862
RsaI GTAC 4 cut(s) 119, 291, 540, 818
RsaNI GTAC 4 cut(s) 118, 290, 539, 817
RseI CAYNNNNRTG 1 cut(s) 549
SaqAI TTAA 2 cut(s) 357, 714
SatI GCNGC 1 cut(s) 470
Sau3AI GATC 1 cut(s) 422
SduI GDGCHC 1 cut(s) 828
SfaNI GCATC 5 cut(s) 63, 289, 634, 712, 794
SfcI CTRYAG 1 cut(s) 739
SmiMI CAYNNNNRTG 1 cut(s) 549
Sse9I AATT 3 cut(s) 39, 455, 717
SspI AATATT 1 cut(s) 481
SspMI CTAG 3 cut(s) 278, 909, 919
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 3 cut(s) 229, 548, 573
TaqI TCGA 1 cut(s) 670
TasI AATT 3 cut(s) 39, 455, 717
TatI WGTACW 2 cut(s) 289, 816
TfiI GAWTC 2 cut(s) 147, 853
Tru1I TTAA 2 cut(s) 357, 714
Tru9I TTAA 2 cut(s) 357, 714
TscAI CASTG 4 cut(s) 499, 551, 826, 873
TseFI GTSAC 3 cut(s) 95, 251, 578
TseI GCWGC 1 cut(s) 469
Tsp45I GTSAC 3 cut(s) 95, 251, 578
TspDTI ATGAA 3 cut(s) 17, 122, 399
TspRI CASTG 4 cut(s) 499, 551, 826, 873
XceI RCATGY 1 cut(s) 616
XcmI CCANNNNNNNNNTGG 2 cut(s) 139, 685
XmiI GTMKAC 1 cut(s) 738
XspI CTAG 3 cut(s) 278, 909, 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.