RLG00000001262

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000166
Physical Location & Seq
Forward (+)
13124519 .. 13124944
426 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001262

Sequence Viewer

Length: 426 bp
ATGATTCTTAACAGAGATGAGCTCAGGAATTCAAGCTTTTCGAGGATACGAGGAACCAGAGGTTACATTGCTCCGGAGTGGGTGTATAATCTTCCCATCACATCCAAAGTGGATGTATACAGCTATGGAGTGGTTGTATTGGAGATGGTGACCGGAAAGAACCCAACAATGGATATGGAAATCAGTGATGGTGAGCAGAGAAGACTAATTATGTGGGTGAGAGAAAAACTAAATGGAACTGAAATTGCGCCCAGAATTGGAGAGATCATAGATCCCTCGTTTGAAGGCAACTATGATGTGGAAAGGATGGAAATTTTGTTAACAGTAGCTTTACATTGTGTGGAAGAAGACAAAGATTCAAGACCAACCATGAGTCAAGTCGTTGAGATGCTTCAACACCACGGCAAAGAATCTCAGAGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

142

Amino Acids

16.32

Weight (kDa)

5.11

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 9 - 129 1.5e-14 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 22 - 131 2.9e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 117
AccIII TCCGGA 1 cut(s) 73
AclWI GGATC 1 cut(s) 266
AcsI RAATTY 2 cut(s) 28, 312
AfiI CCNNNNNNNGG 2 cut(s) 169, 257
AgsI TTSAA 4 cut(s) 33, 284, 360, 395
AluBI AGCT 4 cut(s) 22, 36, 123, 329
AluI AGCT 4 cut(s) 22, 36, 123, 329
Alw21I GWGCWC 1 cut(s) 24
AlwI GGATC 1 cut(s) 266
Aor13HI TCCGGA 1 cut(s) 73
ApoI RAATTY 2 cut(s) 28, 312
AspLEI GCGC 1 cut(s) 250
AsuHPI GGTGA 3 cut(s) 160, 203, 229
BanII GRGCYC 1 cut(s) 24
BbsI GAAGAC 2 cut(s) 208, 354
Bbv12I GWGCWC 1 cut(s) 24
BccI CCATC 4 cut(s) 104, 139, 182, 301
BceAI ACGGC 1 cut(s) 418
BciVI GTATCC 1 cut(s) 39
BfuI GTATCC 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 55
BmsI GCATC 1 cut(s) 378
BpiI GAAGAC 2 cut(s) 208, 354
BplI GAGNNNNNCTC 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 400
BsaWI WCCGGW 2 cut(s) 73, 152
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 120, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 257
Bse3DI GCAATG 1 cut(s) 66
BseAI TCCGGA 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 400
BseGI GGATG 3 cut(s) 101, 118, 312
BseLI CCNNNNNNNGG 2 cut(s) 169, 257
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 2 cut(s) 74, 153
BslI CCNNNNNNNGG 2 cut(s) 169, 257
Bsp1286I GDGCHC 1 cut(s) 24
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 2 cut(s) 264, 271
BspCNI CTCAG 1 cut(s) 36
BspEI TCCGGA 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 400
BssMI GATC 2 cut(s) 264, 271
BssNAI GTATAC 1 cut(s) 118
Bst1107I GTATAC 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 325
BstDEI CTNAG 2 cut(s) 23, 414
BstDSI CCRYGG 1 cut(s) 400
BstEII GGTNACC 1 cut(s) 148
BstF5I GGATG 3 cut(s) 101, 118, 312
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 2 cut(s) 267, 274
BstMBI GATC 2 cut(s) 264, 271
BstPI GGTNACC 1 cut(s) 148
BstV2I GAAGAC 2 cut(s) 208, 354
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BstZ17I GTATAC 1 cut(s) 118
BsuI GTATCC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 400
BtsCI GGATG 3 cut(s) 101, 118, 312
BtsIMutI CAGTG 1 cut(s) 190
CfoI GCGC 1 cut(s) 250
CviAII CATG 1 cut(s) 370
CviJI RGCY 4 cut(s) 22, 36, 123, 329
CviKI_1 RGCY 4 cut(s) 22, 36, 123, 329
DdeI CTNAG 2 cut(s) 23, 414
DpnI GATC 2 cut(s) 266, 273
DpnII GATC 2 cut(s) 264, 271
Ecl136II GAGCTC 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 24
Eco53kI GAGCTC 1 cut(s) 22
Eco91I GGTNACC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 22
EcoO65I GGTNACC 1 cut(s) 148
EcoRI GAATTC 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 24
FaeI CATG 1 cut(s) 373
FaiI YATR 8 cut(s) 87, 118, 126, 176, 212, 269, 294, 371
FatI CATG 1 cut(s) 369
FblI GTMKAC 1 cut(s) 117
FokI GGATG 3 cut(s) 88, 125, 319
FriOI GRGCYC 1 cut(s) 24
GlaI GCGC 1 cut(s) 249
HapII CCGG 2 cut(s) 74, 153
HhaI GCGC 1 cut(s) 250
Hin1II CATG 1 cut(s) 373
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 4 cut(s) 4, 356, 373, 410
HpaI GTTAAC 1 cut(s) 321
HpaII CCGG 2 cut(s) 74, 153
HphI GGTGA 3 cut(s) 160, 203, 229
Hpy166II GTNNAC 2 cut(s) 118, 321
Hpy188I TCNGA 1 cut(s) 417
Hpy188III TCNNGA 3 cut(s) 25, 74, 360
Hpy8I GTNNAC 2 cut(s) 118, 321
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 1 cut(s) 325
HpyF3I CTNAG 2 cut(s) 23, 414
Hsp92II CATG 1 cut(s) 373
HspAI GCGC 1 cut(s) 248
Kpn2I TCCGGA 1 cut(s) 73
KspAI GTTAAC 1 cut(s) 321
Kzo9I GATC 2 cut(s) 264, 271
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 5 cut(s) 10, 70, 87, 166, 265
LweI GCATC 1 cut(s) 378
MaeIII GTNAC 2 cut(s) 62, 148
MalI GATC 2 cut(s) 266, 273
MboI GATC 2 cut(s) 264, 271
MboII GAAGA 4 cut(s) 83, 213, 356, 359
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 5 cut(s) 28, 207, 243, 255, 312
MlyI GAGTC 1 cut(s) 382
MnlI CCTC 5 cut(s) 36, 44, 53, 286, 411
MroI TCCGGA 1 cut(s) 73
MseI TTAA 2 cut(s) 9, 320
MspI CCGG 2 cut(s) 74, 153
NdeII GATC 2 cut(s) 264, 271
NlaIII CATG 1 cut(s) 373
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 148
PfeI GAWTC 3 cut(s) 4, 356, 410
PleI GAGTC 1 cut(s) 381
PpsI GAGTC 1 cut(s) 381
Psp124BI GAGCTC 1 cut(s) 24
PspEI GGTNACC 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 55
PsuI RGATCY 1 cut(s) 271
SacI GAGCTC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 9, 320
Sau3AI GATC 2 cut(s) 264, 271
SchI GAGTC 1 cut(s) 382
SduI GDGCHC 1 cut(s) 24
SetI ASST 5 cut(s) 24, 38, 64, 125, 331
SfaNI GCATC 1 cut(s) 378
Sse9I AATT 5 cut(s) 28, 207, 243, 255, 312
SstI GAGCTC 1 cut(s) 24
TaaI ACNGT 1 cut(s) 325
TaqI TCGA 1 cut(s) 41
TasI AATT 5 cut(s) 28, 207, 243, 255, 312
TfiI GAWTC 3 cut(s) 4, 356, 410
Tru1I TTAA 2 cut(s) 9, 320
Tru9I TTAA 2 cut(s) 9, 320
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
TspRI CASTG 1 cut(s) 190
XapI RAATTY 2 cut(s) 28, 312
XmiI GTMKAC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.