Rorug03G0074600

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000166
Physical Location & Seq
Forward (+)
5867012 .. 5868170
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0074600.1

Sequence Viewer

Length: 531 bp
ATGGCTGAGGTGGCAGAGACAGAGCGGAAGATCCTGGTGGCAGTCGACGAGGGCGAGGAGAGCATGTACGCTCTCTCCTGGTGCCTCAAGAACGTGGTTTCTCAAAATTCCAAAGATACCCTTATCCTGGTCTACGTTAAGCCCCCGAAAGCTGTGTACATGCCCCTAGATGGCACAGGTAGGAGAGAGAGTCCGTCAGGGTATATGTTTTCGACTGATATTTTTGCGGCGATGGAGAAGTACAGCGGCCAGGTGGCCAGCTCCGTCGTCGAGAAGGCCAAGAAGATGTGCAGGGATGTTCTTCCTGAGCAGGATGTTAAGGTGGAGACGAGAGTAGAGAATGGTGATCCGAGGGATGTGATCTGCCATCTGGTGGAGCAGATCGGTGCTGATGTTCTTGTCATGGGTAGTCATGGCTATGGTCTCATCAAGAGGGCTTTCCTTGGAAGTGTGAGCAACCACTGTGCACAGAATGTGAAGTGTCCTGTGTTGATTGTGAAGAAGCCGAAAACAAATTGTGGGAGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

176

Amino Acids

19.33

Weight (kDa)

7.57

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 9 - 167 9.8e-31 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 373
AccBSI CCGCTC 1 cut(s) 25
AccI GTMKAC 2 cut(s) 45, 132
AciI CCGC 3 cut(s) 25, 227, 246
AclWI GGATC 2 cut(s) 25, 341
AcoI YGGCCR 2 cut(s) 247, 255
AcsI RAATTY 1 cut(s) 106
AfaI GTAC 3 cut(s) 68, 158, 242
AfiI CCNNNNNNNGG 3 cut(s) 127, 170, 373
AjnI CCWGG 4 cut(s) 33, 77, 126, 249
AluBI AGCT 2 cut(s) 152, 261
AluI AGCT 2 cut(s) 152, 261
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 3 cut(s) 11, 320, 428
Alw44I GTGCAC 1 cut(s) 465
AlwI GGATC 2 cut(s) 25, 341
AoxI GGCC 3 cut(s) 247, 255, 276
ApaLI GTGCAC 1 cut(s) 465
ApoI RAATTY 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 469
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 469
BbvCI CCTCAGC 1 cut(s) 6
BccI CCATC 3 cut(s) 164, 226, 375
BciT130I CCWGG 4 cut(s) 35, 79, 128, 251
BcoDI GTCTC 3 cut(s) 11, 320, 428
BfaI CTAG 1 cut(s) 167
BisI GCNGC 2 cut(s) 228, 247
BlsI GCNGC 2 cut(s) 229, 248
Bme1390I CCNGG 4 cut(s) 35, 79, 128, 251
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 4 cut(s) 35, 79, 128, 251
Bpu10I CCTNAGC 2 cut(s) 6, 306
BpuEI CTTGAG 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 2 cut(s) 350, 442
BsaXI ACNNNNNCTCC 6 cut(s) 50, 59, 80, 89, 175, 205
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 170, 373
BseBI CCWGG 4 cut(s) 35, 79, 128, 251
BseDI CCNNGG 2 cut(s) 350, 442
BseGI GGATG 3 cut(s) 301, 319, 361
BseLI CCNNNNNNNGG 3 cut(s) 127, 170, 373
BseMII CTCAG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 469
BsgI GTGCAG 1 cut(s) 310
BshFI GGCC 3 cut(s) 249, 257, 278
BshNI GGYRCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 469
BslI CCNNNNNNNGG 3 cut(s) 127, 170, 373
BsmAI GTCTC 3 cut(s) 11, 320, 428
BsmBI CGTCTC 1 cut(s) 320
BsnI GGCC 3 cut(s) 249, 257, 278
Bso31I GGTCTC 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 469
Bsp1407I TGTACA 1 cut(s) 156
Bsp143I GATC 4 cut(s) 30, 346, 360, 381
BspACI CCGC 3 cut(s) 25, 227, 246
BspANI GGCC 3 cut(s) 249, 257, 278
BspCNI CTCAG 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 83
BspPI GGATC 2 cut(s) 25, 341
BspT107I GGYRCC 1 cut(s) 81
BspTNI GGTCTC 1 cut(s) 428
BsrBI CCGCTC 1 cut(s) 25
BsrGI TGTACA 1 cut(s) 156
BssECI CCNNGG 2 cut(s) 350, 442
BssMI GATC 4 cut(s) 30, 346, 360, 381
BssT1I CCWWGG 1 cut(s) 442
Bst2UI CCWGG 4 cut(s) 35, 79, 128, 251
Bst4CI ACNGT 1 cut(s) 464
BstAUI TGTACA 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 6, 306
BstF5I GGATG 3 cut(s) 301, 319, 361
BstKTI GATC 4 cut(s) 33, 349, 363, 384
BstMAI GTCTC 3 cut(s) 11, 320, 428
BstMBI GATC 4 cut(s) 30, 346, 360, 381
BstMWI GCNNNNNNNGC 2 cut(s) 11, 60
BstNI CCWGG 4 cut(s) 35, 79, 128, 251
BstNSI RCATGY 2 cut(s) 67, 163
BstSCI CCNGG 4 cut(s) 33, 77, 126, 249
BstSLI GKGCMC 1 cut(s) 469
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 3 cut(s) 249, 257, 278
BtgZI GCGATG 1 cut(s) 245
BtsCI GGATG 3 cut(s) 301, 319, 361
BtsIMutI CAGTG 1 cut(s) 460
Cac8I GCNNGC 1 cut(s) 259
Csp6I GTAC 3 cut(s) 67, 157, 241
CviAII CATG 4 cut(s) 64, 160, 403, 413
CviQI GTAC 3 cut(s) 67, 157, 241
DdeI CTNAG 2 cut(s) 6, 306
DpnI GATC 4 cut(s) 32, 348, 362, 383
DpnII GATC 4 cut(s) 30, 346, 360, 381
EaeI YGGCCR 2 cut(s) 247, 255
Eco130I CCWWGG 1 cut(s) 442
Eco31I GGTCTC 1 cut(s) 428
EcoRII CCWGG 4 cut(s) 33, 77, 126, 249
EcoT14I CCWWGG 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 442
Esp3I CGTCTC 1 cut(s) 320
FaeI CATG 4 cut(s) 67, 163, 406, 416
FaiI YATR 7 cut(s) 65, 161, 204, 206, 404, 414, 420
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 4 cut(s) 63, 159, 402, 412
FblI GTMKAC 2 cut(s) 45, 132
Fnu4HI GCNGC 2 cut(s) 228, 247
FokI GGATG 3 cut(s) 308, 326, 368
Fsp4HI GCNGC 2 cut(s) 228, 247
FspBI CTAG 1 cut(s) 167
GluI GCNGC 2 cut(s) 228, 247
HaeIII GGCC 3 cut(s) 249, 257, 278
Hin1II CATG 4 cut(s) 67, 163, 406, 416
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 1 cut(s) 190
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 4 cut(s) 46, 133, 157, 467
Hpy188I TCNGA 1 cut(s) 351
Hpy188III TCNNGA 4 cut(s) 88, 271, 305, 430
Hpy8I GTNNAC 4 cut(s) 46, 133, 157, 467
Hpy99I CGWCG 3 cut(s) 50, 269, 272
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4IV ACGT 2 cut(s) 93, 135
HpyCH4V TGCA 2 cut(s) 291, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 60
HpyF3I CTNAG 2 cut(s) 6, 306
HpySE526I ACGT 2 cut(s) 93, 135
Hsp92II CATG 4 cut(s) 67, 163, 406, 416
Kzo9I GATC 4 cut(s) 30, 346, 360, 381
LmnI GCTCC 3 cut(s) 266, 376, 522
MaeI CTAG 1 cut(s) 167
MaeII ACGT 2 cut(s) 93, 135
MalI GATC 4 cut(s) 32, 348, 362, 383
MbiI CCGCTC 1 cut(s) 25
MboI GATC 4 cut(s) 30, 346, 360, 381
MboII GAAGA 4 cut(s) 40, 293, 295, 511
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 1 cut(s) 469
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 2 cut(s) 106, 514
MluNI TGGCCA 1 cut(s) 257
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 5 cut(s) 43, 49, 95, 345, 426
Mox20I TGGCCA 1 cut(s) 257
MscI TGGCCA 1 cut(s) 257
MseI TTAA 2 cut(s) 138, 318
MslI CAYNNNNRTG 1 cut(s) 417
Msp20I TGGCCA 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 246
MspR9I CCNGG 4 cut(s) 35, 79, 128, 251
MvaI CCWGG 4 cut(s) 35, 79, 128, 251
MwoI GCNNNNNNNGC 2 cut(s) 11, 60
NdeII GATC 4 cut(s) 30, 346, 360, 381
NlaIII CATG 4 cut(s) 67, 163, 406, 416
NlaIV GGNNCC 1 cut(s) 83
NspI RCATGY 2 cut(s) 67, 163
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PflMI CCANNNNNTGG 1 cut(s) 373
PkrI GCNGC 2 cut(s) 229, 248
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
Psp6I CCWGG 4 cut(s) 33, 77, 126, 249
PspGI CCWGG 4 cut(s) 33, 77, 126, 249
PspN4I GGNNCC 1 cut(s) 83
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 3 cut(s) 68, 158, 242
RsaNI GTAC 3 cut(s) 67, 157, 241
RseI CAYNNNNRTG 1 cut(s) 417
SalI GTCGAC 1 cut(s) 44
SaqAI TTAA 2 cut(s) 138, 318
SatI GCNGC 2 cut(s) 228, 247
Sau3AI GATC 4 cut(s) 30, 346, 360, 381
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 4 cut(s) 35, 79, 128, 251
SduI GDGCHC 1 cut(s) 469
SetI ASST 8 cut(s) 12, 96, 138, 154, 181, 255, 263, 324
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 106, 514
SsiI CCGC 3 cut(s) 25, 227, 246
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 4 cut(s) 33, 77, 126, 249
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 1 cut(s) 464
TaiI ACGT 2 cut(s) 96, 138
TaqI TCGA 3 cut(s) 45, 212, 270
TasI AATT 2 cut(s) 106, 514
TatI WGTACW 2 cut(s) 156, 240
TauI GCSGC 2 cut(s) 230, 249
Tru1I TTAA 2 cut(s) 138, 318
Tru9I TTAA 2 cut(s) 138, 318
TscAI CASTG 1 cut(s) 467
TspGWI ACGGA 2 cut(s) 183, 253
TspRI CASTG 1 cut(s) 467
Van91I CCANNNNNTGG 1 cut(s) 373
VneI GTGCAC 1 cut(s) 465
XapI RAATTY 1 cut(s) 106
XceI RCATGY 2 cut(s) 67, 163
XmiI GTMKAC 2 cut(s) 45, 132
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.