Rh3BG137500

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
11659099 .. 11661847
2749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG137500.1

Sequence Viewer

Length: 2376 bp
ATGGAAGTTCCCAAATTTCTCATTCTTTTACTGTTTGCAGCAACGGTTGCTCGGACTCAAGCGCGGTCACTAGGGTTGCAAAGCCTAAGGCAAGGGGGCTCCTTGAAAGTCGAGGAAGAGAGTGACTTCTTAGTTTCACCAAATGGAACATTTTCCAGTGGATTTTACAACGTCAACGCCAATTCCTCCTGCTATTCAGTATGGTACACCAACACTATCAACAAAACAGTTGTCTGGATGGCTAACAGAGATACACCTGTCAGCATTAGACAGTCGAAGTTAGCCCTCCGCAGAAATGGCAACCTGGTCTTGACTGATGGAGTTGGTTCGACAGTATGGTCAACCAACACTTTGTCTAATGCAAGCATGGAGTTTCATCTTCGACTTCTTGAAACCGGAAACTTGGTGCTGATCAACCAAGCAGAGAGGATCATCTGGCAGAGTTTTGATTCTCCCACAGATACACTTTTACCATCTCAGCAATTTGACAAGAGCAAAACCTTGGTGTGCATGAGAAGTCGAGGTACATACTTGTCTGGTTTCTATAACTTCAAATTTGATGGTAATAATGTCTTGTACCTCACCCACGATGGCCCTCTACTTTCAAGTGTTTATTGGCCAAAGATGGATACATCTGTTTTTATTAGTGGCAGATCACCTTACAATAGCTCTAGAGTAGCAGTCTTGGATAAACGAGGGGAATTTGTATCAAGTGACAATTTAAAGTTCAATGCATCTGACTATGGGGTTGGTCCAAAGCGCCGTCTAACCTTGGATTATGATGGCCTCTTAAGATTGTACAGTCTAAATGAATCAGCTGGGCTTTGGAAAGTCTCATGGTTGCCTGAAATTGATTTTTGCCGGGTTCATGGCTTGTGCGGTGAGTATGGTATTTGCACTTACAAACCAGAACCAACTTGTACTTGCCCTCATGGTTTTTCCATGACCGATCCTTCAGACTGGTCTAAAGGCTGCTCACCTCCATTCAATTTGACTCATGACTCAAAAAAGTTGGACTTCATGGAGCTTCCTTACACAGATTACTATGGATCTGATTTGGACACATATCATATGGGAATCTCTTTTGAAGAATGCAGGAATACATGCCTGAATGATTCAAGGTGCAAAGGGTTTGGATTTGCACTGGACGGATATGGACAATGTTACCCTAAGAACTTTCTTCTTAATGGATTTCGTGTGCCGAGTACTCCCAGCATCATCCATATTAAGATTACAAAAGGTTCTCTGAGTCGTGATGAAGTATCCCAGCTACAAACATATGATTTGAACTGTTCAAGGGCAGAAGTTGCTAAAAAATTTAGTGGTCCTCAAGTAAAAAAGAGCAATCAGTACGTGAAGTACTTGACTGGTTTTGTAAGTTCTTTTGCGATAATTGAAGCAATCTGTGTTGGTTTGACATGGTGGTGCGTGTTACGAAAGCATGCTGATGAGGACTATATGAACATTGGTTACATGGAATTAGTCATGGAAATCAAACGCTTCACCTATGCAGAACTAAAAAGAGCAACCAAGGGTTTCACACAGGAGATAGGAAAAGGCGGTTTTGGAGCAGTTTATAAAGGGGTTCTCGGTGATGGAAGAGTTGTTGCTGTGAAGAGATTAGAGGGCATTGTGCAAGGAGACGCAGAGTTTTGGGCAGAGGTTAGTGTGATAGGGAATATCAACCACAGGAACTTGGTTAAGCTTTGGGGTTTCTGTGCTGAGAATGAACATAAGCTGTTGGTGTATGAGTACCAGGAGAATGGATCCTTGGATAAAATATTGTTCTCAGATGTGGAATTAGGATTGGAGCAGCGATACAACATTGCATTAGGTACTGCAAAGGGTTTGTCATATTTGCATGAGGAGTGCTTGGAATGGGTGCTCCACTGTGATGTAAAGCCTCAAAACATTCTCTTGGATGACCATCTTGAACCGAAAGTGGCAGATTTTGGCATGTCAAAGTTGTTCAAGGGCATTCCTGACGACATTGAGTTTTCAAGAGCTCGCGGCACCAGAGGTTATATGGCTCCAGAGTGGATGATGAATCTGAAGATTGATGCAAAGGTAGATGTATACAGCTATGGGATTGTTTTGTTGGAACTATTAACTGGAAAGAGTGCTTCTATTTTGCTTTCACCCGAGGCTAGTCCTGTTTCGAAGCACAAAGAACACAACCAAGTGGTACAATGTGTGACTGTGAAAATCGGCAGAGAGGGGCTTGAGGATGTGATTGATCCTAGACTACACCACGAATTCAACAACAAGAAGCTTGAAAGATTGATGACAGTTGCCTTACTTTGCGTGCACGAAGACCGCAATGCAAGGCCAGCCATGAGTAAGGTTGTGGAGCTTCTGGTTCAGAAGGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

791

Amino Acids

89.16

Weight (kDa)

6.55

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 76 - 166 1.3e-26 D-mannose binding lectin
S_locus_glycop PF00954 254 - 314 9.2e-10 S-locus glycoprotein domain
PK_Tyr_Ser-Thr PF07714 513 - 786 1.5e-40 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 514 - 783 1.1e-47 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1578
AasI GACNNNNNNGTC 1 cut(s) 337
AccB1I GGYRCC 1 cut(s) 2012
AccI GTMKAC 1 cut(s) 2076
AccII CGCG 2 cut(s) 64, 2010
AciI CCGC 6 cut(s) 64, 289, 879, 1560, 2010, 2317
AclWI GGATC 6 cut(s) 437, 944, 1057, 1761, 1774, 2231
AcoI YGGCCR 1 cut(s) 617
AcsI RAATTY 5 cut(s) 14, 554, 701, 1316, 2255
AcuI CTGAAG 2 cut(s) 939, 2072
AflII CTTAAG 1 cut(s) 790
AjnI CCWGG 2 cut(s) 303, 1755
AjuI GAANNNNNNNTTGG 2 cut(s) 1754, 1786
Alw21I GWGCWC 3 cut(s) 1887, 2008, 2310
Alw26I GTCTC 2 cut(s) 838, 1635
Alw44I GTGCAC 1 cut(s) 2306
AlwI GGATC 6 cut(s) 437, 944, 1057, 1761, 1774, 2231
Ama87I CYCGRG 1 cut(s) 2141
AoxI GGCC 4 cut(s) 592, 617, 784, 2327
ApaLI GTGCAC 1 cut(s) 2306
ApeKI GCWGC 3 cut(s) 38, 972, 1813
ApoI RAATTY 5 cut(s) 14, 554, 701, 1316, 2255
ArsI GACNNNNNNTTYG 4 cut(s) 216, 248, 1835, 1867
Asp700I GAANNNNTTC 1 cut(s) 151
AspLEI GCGC 2 cut(s) 64, 762
AspS9I GGNCC 3 cut(s) 593, 752, 1325
AsuC2I CCSGG 1 cut(s) 863
AsuHPI GGTGA 8 cut(s) 129, 574, 648, 893, 969, 1495, 1604, 2130
AsuII TTCGAA 1 cut(s) 2159
AvaI CYCGRG 1 cut(s) 2141
AvaII GGWCC 2 cut(s) 752, 1325
AxyI CCTNAGG 1 cut(s) 86
BaeGI GKGCMC 1 cut(s) 2310
BaeI ACNNNNGTAYC 4 cut(s) 243, 276, 621, 654
BalI TGGCCA 1 cut(s) 619
BamHI GGATCC 1 cut(s) 1766
BanI GGYRCC 1 cut(s) 2012
BanII GRGCYC 2 cut(s) 101, 2008
BarI GAAGNNNNNNTAC 2 cut(s) 508, 540
BbsI GAAGAC 1 cut(s) 2319
Bbv12I GWGCWC 3 cut(s) 1887, 2008, 2310
BbvI GCAGC 3 cut(s) 50, 959, 1825
BccI CCATC 9 cut(s) 232, 311, 481, 554, 584, 619, 776, 1589, 1935
BceAI ACGGC 1 cut(s) 747
BciT130I CCWGG 2 cut(s) 305, 1757
BciVI GTATCC 2 cut(s) 622, 1273
BclI TGATCA 1 cut(s) 411
BcnI CCSGG 1 cut(s) 863
BcoDI GTCTC 2 cut(s) 838, 1635
BfaI CTAG 4 cut(s) 71, 672, 2148, 2241
BfoI RGCGCY 1 cut(s) 763
BfrI CTTAAG 1 cut(s) 790
BfuI GTATCC 2 cut(s) 622, 1273
BisI GCNGC 4 cut(s) 39, 973, 1814, 2011
BlsI GCNGC 4 cut(s) 40, 974, 1815, 2012
BmcAI AGTACT 2 cut(s) 1207, 1361
Bme1390I CCNGG 3 cut(s) 305, 863, 1757
Bme18I GGWCC 2 cut(s) 752, 1325
BmeT110I CYCGRG 1 cut(s) 2141
BmgT120I GGNCC 3 cut(s) 593, 752, 1325
BmiI GGNNCC 4 cut(s) 100, 1768, 2014, 2031
BmrFI CCNGG 3 cut(s) 305, 863, 1757
BmsI GCATC 3 cut(s) 743, 1224, 2050
BpiI GAAGAC 1 cut(s) 2319
BpmI CTGGAG 1 cut(s) 2016
Bpu14I TTCGAA 1 cut(s) 2159
BpuEI CTTGAG 3 cut(s) 42, 1314, 2243
BpuMI CCSGG 1 cut(s) 863
BsaAI YACGTR 1 cut(s) 1354
BsaBI GATNNNNATC 1 cut(s) 1926
BsaJI CCNNGG 5 cut(s) 501, 771, 1530, 1770, 2142
BsaWI WCCGGW 1 cut(s) 395
Bse1I ACTGG 5 cut(s) 156, 965, 1149, 1372, 2116
Bse21I CCTNAGG 1 cut(s) 86
Bse3DI GCAATG 2 cut(s) 1824, 2326
Bse8I GATNNNNATC 1 cut(s) 1926
BseBI CCWGG 2 cut(s) 305, 1757
BseDI CCNNGG 5 cut(s) 501, 771, 1530, 1770, 2142
BseGI GGATG 6 cut(s) 243, 1218, 1927, 2046, 2233, 2374
BseJI GATNNNNATC 1 cut(s) 1926
BseMI GCAATG 2 cut(s) 1824, 2326
BseMII CTCAG 4 cut(s) 491, 1238, 1713, 1803
BseNI ACTGG 5 cut(s) 156, 965, 1149, 1372, 2116
BseRI GAGGAG 1 cut(s) 1880
BseSI GKGCMC 1 cut(s) 2310
BseXI GCAGC 3 cut(s) 50, 959, 1825
BseYI CCCAGC 3 cut(s) 818, 1211, 1266
Bsh1236I CGCG 2 cut(s) 64, 2010
BshFI GGCC 4 cut(s) 594, 619, 786, 2329
BshNI GGYRCC 1 cut(s) 2012
BsiHKAI GWGCWC 3 cut(s) 1887, 2008, 2310
BsiHKCI CYCGRG 1 cut(s) 2141
BsiSI CCGG 2 cut(s) 396, 862
BsmAI GTCTC 2 cut(s) 838, 1635
BsmBI CGTCTC 1 cut(s) 1635
BsmI GAATGC 2 cut(s) 1097, 1977
BsnI GGCC 4 cut(s) 594, 619, 786, 2329
BsoBI CYCGRG 1 cut(s) 2141
Bsp119I TTCGAA 1 cut(s) 2159
Bsp1286I GDGCHC 4 cut(s) 101, 1887, 2008, 2310
Bsp1407I TGTACA 1 cut(s) 798
Bsp143I GATC 7 cut(s) 411, 429, 653, 949, 1049, 1766, 2236
BspACI CCGC 6 cut(s) 64, 289, 879, 1560, 2010, 2317
BspANI GGCC 4 cut(s) 594, 619, 786, 2329
BspCNI CTCAG 4 cut(s) 490, 1239, 1714, 1802
BspFNI CGCG 2 cut(s) 64, 2010
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 4 cut(s) 100, 1768, 2014, 2031
BspPI GGATC 6 cut(s) 437, 944, 1057, 1761, 1774, 2231
BspT104I TTCGAA 1 cut(s) 2159
BspT107I GGYRCC 1 cut(s) 2012
BspTI CTTAAG 1 cut(s) 790
BsrDI GCAATG 2 cut(s) 1824, 2326
BsrGI TGTACA 1 cut(s) 798
BsrI ACTGG 5 cut(s) 156, 965, 1149, 1372, 2116
BssECI CCNNGG 5 cut(s) 501, 771, 1530, 1770, 2142
BssMI GATC 7 cut(s) 411, 429, 653, 949, 1049, 1766, 2236
BssNAI GTATAC 1 cut(s) 2077
BssT1I CCWWGG 4 cut(s) 501, 771, 1530, 1770
Bst1107I GTATAC 1 cut(s) 2077
Bst2UI CCWGG 2 cut(s) 305, 1757
Bst6I CTCTTC 3 cut(s) 111, 1594, 1610
BstAFI CTTAAG 1 cut(s) 790
BstAPI GCANNNNNTGC 2 cut(s) 47, 1307
BstAUI TGTACA 1 cut(s) 798
BstBAI YACGTR 1 cut(s) 1354
BstBI TTCGAA 1 cut(s) 2159
BstC8I GCNNGC 5 cut(s) 364, 1443, 2008, 2306, 2331
BstDEI CTNAG 7 cut(s) 86, 130, 477, 1170, 1247, 1722, 1789
BstF5I GGATG 6 cut(s) 243, 1218, 1927, 2046, 2233, 2374
BstFNI CGCG 2 cut(s) 64, 2010
BstH2I RGCGCY 1 cut(s) 763
BstHHI GCGC 2 cut(s) 64, 762
BstKTI GATC 7 cut(s) 414, 432, 656, 952, 1052, 1769, 2239
BstMAI GTCTC 2 cut(s) 838, 1635
BstMBI GATC 7 cut(s) 411, 429, 653, 949, 1049, 1766, 2236
BstMWI GCNNNNNNNGC 4 cut(s) 47, 297, 1307, 2330
BstNI CCWGG 2 cut(s) 305, 1757
BstNSI RCATGY 3 cut(s) 1107, 1445, 1960
BstSCI CCNGG 3 cut(s) 303, 861, 1755
BstSLI GKGCMC 1 cut(s) 2310
BstUI CGCG 2 cut(s) 64, 2010
BstV1I GCAGC 3 cut(s) 50, 959, 1825
BstV2I GAAGAC 1 cut(s) 2319
BstX2I RGATCY 2 cut(s) 1049, 1766
BstXI CCANNNNNNTGG 1 cut(s) 1763
BstYI RGATCY 2 cut(s) 1049, 1766
BstZ17I GTATAC 1 cut(s) 2077
Bsu36I CCTNAGG 1 cut(s) 86
BsuI GTATCC 2 cut(s) 622, 1273
BsuRI GGCC 4 cut(s) 594, 619, 786, 2329
BtsCI GGATG 6 cut(s) 243, 1218, 1927, 2046, 2233, 2374
BtsIMutI CAGTG 3 cut(s) 163, 1142, 1888
Cac8I GCNNGC 5 cut(s) 364, 1443, 2008, 2306, 2331
CciI TCATGA 1 cut(s) 997
CfoI GCGC 2 cut(s) 64, 762
Cfr13I GGNCC 3 cut(s) 593, 752, 1325
CseI GACGC 1 cut(s) 1652
CsiI ACCWGGT 1 cut(s) 303
DdeI CTNAG 7 cut(s) 86, 130, 477, 1170, 1247, 1722, 1789
DpnI GATC 7 cut(s) 413, 431, 655, 951, 1051, 1768, 2238
DpnII GATC 7 cut(s) 411, 429, 653, 949, 1049, 1766, 2236
DraI TTTAAA 1 cut(s) 723
DrdI GACNNNNNNGTC 1 cut(s) 337
DseDI GACNNNNNNGTC 1 cut(s) 337
EaeI YGGCCR 1 cut(s) 617
Eam1104I CTCTTC 3 cut(s) 111, 1594, 1610
EarI CTCTTC 3 cut(s) 111, 1594, 1610
Ecl136II GAGCTC 1 cut(s) 2006
Eco130I CCWWGG 4 cut(s) 501, 771, 1530, 1770
Eco24I GRGCYC 2 cut(s) 101, 2008
Eco47I GGWCC 2 cut(s) 752, 1325
Eco53kI GAGCTC 1 cut(s) 2006
Eco57I CTGAAG 2 cut(s) 939, 2072
Eco81I CCTNAGG 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 2141
EcoICRI GAGCTC 1 cut(s) 2006
EcoRI GAATTC 1 cut(s) 2255
EcoRII CCWGG 2 cut(s) 303, 1755
EcoT14I CCWWGG 4 cut(s) 501, 771, 1530, 1770
EcoT22I ATGCAT 1 cut(s) 736
EcoT38I GRGCYC 2 cut(s) 101, 2008
ErhI CCWWGG 4 cut(s) 501, 771, 1530, 1770
Esp3I CGTCTC 1 cut(s) 1635
FalI AAGNNNNNCTT 2 cut(s) 1001, 1033
FauNDI CATATG 2 cut(s) 1071, 1279
FbaI TGATCA 1 cut(s) 411
FblI GTMKAC 1 cut(s) 2076
Fnu4HI GCNGC 4 cut(s) 39, 973, 1814, 2011
FokI GGATG 5 cut(s) 250, 1205, 1934, 2053, 2240
FriOI GRGCYC 2 cut(s) 101, 2008
Fsp4HI GCNGC 4 cut(s) 39, 973, 1814, 2011
FspBI CTAG 4 cut(s) 71, 672, 2148, 2241
GlaI GCGC 2 cut(s) 63, 761
GluI GCNGC 4 cut(s) 39, 973, 1814, 2011
GsaI CCCAGC 3 cut(s) 822, 1215, 1270
GsuI CTGGAG 1 cut(s) 2016
HaeII RGCGCY 1 cut(s) 763
HaeIII GGCC 4 cut(s) 594, 619, 786, 2329
HapII CCGG 2 cut(s) 396, 862
HgaI GACGC 1 cut(s) 1652
HhaI GCGC 2 cut(s) 64, 762
Hin6I GCGC 2 cut(s) 62, 760
HinP1I GCGC 2 cut(s) 62, 760
HincII GTYRAC 2 cut(s) 175, 342
HindII GTYRAC 2 cut(s) 175, 342
HindIII AAGCTT 2 cut(s) 1703, 2270
HinfI GANTC 9 cut(s) 55, 449, 812, 994, 1001, 1077, 1115, 1249, 2047
HpaII CCGG 2 cut(s) 396, 862
HphI GGTGA 8 cut(s) 129, 574, 648, 893, 969, 1495, 1604, 2130
Hpy166II GTNNAC 5 cut(s) 175, 207, 342, 2077, 2308
Hpy188I TCNGA 8 cut(s) 54, 739, 958, 1054, 1248, 1792, 2052, 2364
Hpy8I GTNNAC 5 cut(s) 175, 207, 342, 2077, 2308
HpyAV CCTTC 2 cut(s) 963, 2359
HpyCH4IV ACGT 2 cut(s) 171, 1353
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 297, 1307, 2330
HpyF3I CTNAG 7 cut(s) 86, 130, 477, 1170, 1247, 1722, 1789
HpySE526I ACGT 2 cut(s) 171, 1353
HspAI GCGC 2 cut(s) 62, 760
Ksp22I TGATCA 1 cut(s) 411
Kzo9I GATC 7 cut(s) 411, 429, 653, 949, 1049, 1766, 2236
LmnI GCTCC 7 cut(s) 104, 1024, 1568, 1810, 1890, 2035, 2350
Lsp1109I GCAGC 3 cut(s) 50, 959, 1825
LweI GCATC 3 cut(s) 743, 1224, 2050
MabI ACCWGGT 1 cut(s) 303
MaeI CTAG 4 cut(s) 71, 672, 2148, 2241
MaeII ACGT 2 cut(s) 171, 1353
MaeIII GTNAC 7 cut(s) 66, 122, 713, 1163, 1431, 1469, 2194
MalI GATC 7 cut(s) 413, 431, 655, 951, 1051, 1768, 2238
MboI GATC 7 cut(s) 411, 429, 653, 949, 1049, 1766, 2236
MboII GAAGA 8 cut(s) 128, 371, 1100, 1172, 1611, 1627, 2065, 2324
MflI RGATCY 2 cut(s) 1049, 1766
MhlI GDGCHC 4 cut(s) 101, 1887, 2008, 2310
MlsI TGGCCA 1 cut(s) 619
MluNI TGGCCA 1 cut(s) 619
MlyI GAGTC 4 cut(s) 49, 988, 995, 1258
MmeI TCCRAC 2 cut(s) 993, 2079
Mox20I TGGCCA 1 cut(s) 619
Mph1103I ATGCAT 1 cut(s) 736
MroXI GAANNNNTTC 1 cut(s) 151
MscI TGGCCA 1 cut(s) 619
MseI TTAA 6 cut(s) 722, 791, 1185, 1227, 1701, 2108
MslI CAYNNNNRTG 3 cut(s) 1423, 1446, 1893
Msp20I TGGCCA 1 cut(s) 619
MspA1I CMGCKG 1 cut(s) 818
MspCI CTTAAG 1 cut(s) 790
MspI CCGG 2 cut(s) 396, 862
MspR9I CCNGG 3 cut(s) 305, 863, 1757
Mva1269I GAATGC 2 cut(s) 1097, 1977
MvaI CCWGG 2 cut(s) 305, 1757
MvnI CGCG 2 cut(s) 64, 2010
MwoI GCNNNNNNNGC 4 cut(s) 47, 297, 1307, 2330
NciI CCSGG 1 cut(s) 863
NdeI CATATG 2 cut(s) 1071, 1279
NdeII GATC 7 cut(s) 411, 429, 653, 949, 1049, 1766, 2236
NlaIV GGNNCC 4 cut(s) 100, 1768, 2014, 2031
NmeAIII GCCGAG 1 cut(s) 1227
NmuCI GTSAC 4 cut(s) 66, 122, 713, 2194
NsiI ATGCAT 1 cut(s) 736
NspI RCATGY 3 cut(s) 1107, 1445, 1960
NspV TTCGAA 1 cut(s) 2159
PaeI GCATGC 1 cut(s) 1445
PagI TCATGA 1 cut(s) 997
PctI GAATGC 2 cut(s) 1097, 1977
PdmI GAANNNNTTC 1 cut(s) 151
PfeI GAWTC 5 cut(s) 449, 812, 1077, 1115, 2047
PkrI GCNGC 4 cut(s) 40, 974, 1815, 2012
PleI GAGTC 4 cut(s) 49, 988, 995, 1257
PpsI GAGTC 4 cut(s) 49, 988, 995, 1257
Ppu21I YACGTR 1 cut(s) 1354
PsiI TTATAA 1 cut(s) 1578
Psp124BI GAGCTC 1 cut(s) 2008
Psp6I CCWGG 2 cut(s) 303, 1755
PspFI CCCAGC 3 cut(s) 818, 1211, 1266
PspGI CCWGG 2 cut(s) 303, 1755
PspN4I GGNNCC 4 cut(s) 100, 1768, 2014, 2031
PspPI GGNCC 3 cut(s) 593, 752, 1325
PsrI GAACNNNNNNTAC 2 cut(s) 1454, 1486
PsuI RGATCY 2 cut(s) 1049, 1766
PvuII CAGCTG 1 cut(s) 818
RseI CAYNNNNRTG 3 cut(s) 1423, 1446, 1893
SacI GAGCTC 1 cut(s) 2008
SaqAI TTAA 6 cut(s) 722, 791, 1185, 1227, 1701, 2108
SatI GCNGC 4 cut(s) 39, 973, 1814, 2011
Sau3AI GATC 7 cut(s) 411, 429, 653, 949, 1049, 1766, 2236
Sau96I GGNCC 3 cut(s) 593, 752, 1325
ScaI AGTACT 2 cut(s) 1207, 1361
SchI GAGTC 4 cut(s) 49, 988, 995, 1258
ScrFI CCNGG 3 cut(s) 305, 863, 1757
SduI GDGCHC 4 cut(s) 101, 1887, 2008, 2310
SexAI ACCWGGT 1 cut(s) 303
SfaNI GCATC 3 cut(s) 743, 1224, 2050
SfuI TTCGAA 1 cut(s) 2159
SinI GGWCC 2 cut(s) 752, 1325
SmiMI CAYNNNNRTG 3 cut(s) 1423, 1446, 1893
SmlI CTYRAG 4 cut(s) 57, 790, 1329, 2222
SmoI CTYRAG 4 cut(s) 57, 790, 1329, 2222
SphI GCATGC 1 cut(s) 1445
SsiI CCGC 6 cut(s) 64, 289, 879, 1560, 2010, 2317
SspI AATATT 1 cut(s) 1782
SspMI CTAG 4 cut(s) 71, 672, 2148, 2241
SstI GAGCTC 1 cut(s) 2008
StyD4I CCNGG 3 cut(s) 303, 861, 1755
StyI CCWWGG 4 cut(s) 501, 771, 1530, 1770
TaiI ACGT 2 cut(s) 174, 1356
TaqI TCGA 6 cut(s) 111, 275, 329, 382, 520, 2159
TaqII GACCGA 1 cut(s) 962
TatI WGTACW 4 cut(s) 798, 920, 1205, 1359
TauI GCSGC 1 cut(s) 2013
TfiI GAWTC 5 cut(s) 449, 812, 1077, 1115, 2047
Tru1I TTAA 6 cut(s) 722, 791, 1185, 1227, 1701, 2108
Tru9I TTAA 6 cut(s) 722, 791, 1185, 1227, 1701, 2108
TscAI CASTG 3 cut(s) 163, 1149, 1895
TseFI GTSAC 4 cut(s) 66, 122, 713, 2194
TseI GCWGC 3 cut(s) 38, 972, 1813
Tsp45I GTSAC 4 cut(s) 66, 122, 713, 2194
TspDTI ATGAA 8 cut(s) 365, 825, 857, 1009, 1272, 1475, 1743, 2060
TspGWI ACGGA 1 cut(s) 1164
TspRI CASTG 3 cut(s) 163, 1149, 1895
Vha464I CTTAAG 1 cut(s) 790
VneI GTGCAC 1 cut(s) 2306
VpaK11BI GGWCC 2 cut(s) 752, 1325
XapI RAATTY 5 cut(s) 14, 554, 701, 1316, 2255
XbaI TCTAGA 1 cut(s) 671
XceI RCATGY 3 cut(s) 1107, 1445, 1960
XcmI CCANNNNNNNNNTGG 1 cut(s) 2023
XmiI GTMKAC 1 cut(s) 2076
XmnI GAANNNNTTC 1 cut(s) 151
XspI CTAG 4 cut(s) 71, 672, 2148, 2241
ZrmI AGTACT 2 cut(s) 1207, 1361
Zsp2I ATGCAT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.