Rw3G011090

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000166
Physical Location & Seq
Forward (+)
10764285 .. 10770957
6673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G011090.1

Sequence Viewer

Length: 2415 bp
ATGGCACACCAAACTGTTGTTTCATCTTCAAAATTGACTTGTTTTTTTATGTTTCTACTTTCCCTCTGTTTTGCAACCGCAAATACCCTGAACAGAGGCTCTTCGCTTTCGGTGAAAAATGCTCATTCAGACTTGCTAACTTCCCCAGACAAATCATTTACGTGTGGATTCTATAGGGTACCGGGTAGAAATGCCTATTGGTTCTCCATATGGTTCACAAATTCCAAAGATAAAACCGTTGTTTGGATGGCTAACAGAGACAGACCCGTTGGCCTGGAATCCCGAGTTTCGTTGCGTCGAGATGGCTCCATGGTCTTGACTAATCATGTGGATTTCACAACCATAATCTGGGAGACCAGCACCTGCTCCACTGGCGTTGACAGAGCGGAGCTTCTGAATTCGGGCAACCTTGTTCTGAAAGATCCAAATGGTACAATTCTGTGGCAAAGCTTTGATTTTCCCACTGATACTCTCCTCCCAAACCAACCATTTACAAAAAGCAGCACTCTGGTATCAAATTTAGGAAGAGGGAATTTTGGTGCTGGATATTTCAATTTCTATTTTGATAATGATAATGTTTTGAAGTTGATGTATGATGGTCCTGACATTTCAAGCTTGTATTGGCCCGACCCTGGTTATAGTATGCCTGAGAATGGTAGAAATGCTGTCAATAGTAGTAGAATTGCTGTTTTAGATGAACTTGGTAGTTTTTCATCTAGTGATGAACTGCAGTTCAGTGCTATCGACATGGGTTCGAGAGTGAAAAGGCGGTTGACAATGGATTATGATGGAAATCTAAGACTTTATAGTCTTAATAGCTCAACGGGATTGTGGGTGATCACTTGGCAAGCTATGGCGAAGCCTTGTAAGGTTCATGGAATTTGTGGGAGAAATGGGATTTGCATTTATACTCCAGCACCCAAGTGTTCATGTCCTCCTGGCTATGAAGCAGTCGATGCAAGTAACTTGAACTTGGGCTGCAAGCCTAAATTCAAGCGTACATGCTCGAAGTCCCAAGAGGAGAAATTCGTGCAGATTCCGCAAGTAAATTTCTATGGATCTGATCTCAATTTTAATAACTTTTCTGGTAGTGCAGTTTCAATGGATGATTGCAGACAGCTCTGCTTGGGGGATTGCCGGTGTGAGGCATTTAGCTATTGGCTAAATGGGGAAGGGAGGTGTTACACCAAAAGTGTTCTTTTCAATGGCTACAAGTCTCCGGATTTTTGGGACGCTATATACTTGAGAATGCCTGTGAGTTTCAGTGTGAATACATCAAAACCCCAATATTCTAATGCCTCTATTCCATGCAAGACCAATGGTTCTGCAATGTATGGCACTACCGGTAAAAGGGTGAGATGGGTATATCTGTATAGTTTTGCTTTTGCAGTTGGTGCTGTTGAGTTTCTTTTTGTAGTATCAGGTTGGTGGCTACTTTTCAGAAGACATGGTAGTGCTGTAACTCCTGTGGAAGACGGATATCGTGTGATTTCAAGTCAATTTAGAAGGTTTCGCTTCAATGAGCTCAAGAATGCAACCAAAAACTTCCAGGAAGAGCTGGGAAGAGGGGCTTCAGGGTCTGTCTATAAGGGTGTTCTGGAGGATGAAAGAGTAGTGGCTGTCAAGAAATTGGCAGATATTCATCAAGGGGAAGATGCGTTTTGGGCAGAAGTAAGCACAATTGGCAAAATCAATCACATGAATCTAGTGAGAATTTGGGGATTTTGCTCAGAAGATGAGCAGAGACTACTGGTTTCTGAGTTTGTTGAAAATGGGTCTTTGGACAAGCACTTGTTCACCTCAAATTTACTTGGATGGAAAGAGAGGTATAAAGTTGCACTAGGGATAGCAAAGGGCTTAGCCTATCTTCACCATGAATGTCTGGAATGGGTTATACACTGTGACGTGAAGCCTGAAAATATACTCCTAGACAGTGATTTTGAGCCAAAGATTGCAGATTTTGGGCTGGCAAAGCTAACTCAGAGAGATAGGCTCATTTCAATGTTCTCTCAGATTCGAGGAACAAAAGGTTATATGGCCCCGGAGTGGGCTATGAACCTTCGAATTACTGCAAAGGTTGATGTTTACAGTTATGGGGTGGTGATCCTGGAGATAGTGAAGGGCATTCGACTTACAAGTTGGTTGCTGGAGGATATTGAAGAGGATCAAGAAGCAGAGCTTACCAAGTTTGTGAGGGAAGCCAAAAGGAAAATTCAACTAGGGGAAGAGTTGTTGATAGAGGATGTTGCTGATCCAAGACTAGAAGGGCAGTTCAGCAGGAACCAAGCAGCAAAGATGGTTAAAATTGGCATTGCCTGTGTGGAGGAAGATAGGAGCAAAAGACCAACAATGGATTCAGTGGTAAAAAGTTTGCTAGAATGTGAAGATGAATCTTACATTCATTCTTCACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

804

Amino Acids

90.77

Weight (kDa)

6.89

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 79 - 166 4.7e-21 D-mannose binding lectin
S_locus_glycop PF00954 239 - 317 6.1e-11 S-locus glycoprotein domain
PAN_2 PF08276 335 - 396 3.2e-06 PAN-like domain
PK_Tyr_Ser-Thr PF07714 516 - 791 2.5e-42 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 517 - 789 3e-50 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 371
AasI GACNNNNNNGTC 1 cut(s) 807
Acc36I ACCTGC 1 cut(s) 371
Acc65I GGTACC 1 cut(s) 178
AccB1I GGYRCC 1 cut(s) 178
AccB7I CCANNNNNTGG 1 cut(s) 348
AccBSI CCGCTC 1 cut(s) 386
AccIII TCCGGA 1 cut(s) 1219
AciI CCGC 4 cut(s) 78, 386, 769, 1040
AclWI GGATC 5 cut(s) 416, 1066, 2098, 2172, 2246
AcuI CTGAAG 1 cut(s) 1557
AfaI GTAC 3 cut(s) 180, 433, 1000
AfiI CCNNNNNNNGG 8 cut(s) 243, 348, 632, 653, 1144, 1350, 2046, 2047
AflIII ACRYGT 1 cut(s) 161
AgeI ACCGGT 1 cut(s) 1343
AjiI CACGTC 1 cut(s) 1906
AjnI CCWGG 5 cut(s) 273, 631, 937, 1548, 2106
AjuI GAANNNNNNNTTGG 4 cut(s) 181, 213, 2338, 2370
AleI CACNNNNGTG 1 cut(s) 922
Alw21I GWGCWC 1 cut(s) 1527
Alw26I GTCTC 4 cut(s) 252, 347, 1221, 1738
AlwI GGATC 5 cut(s) 416, 1066, 2098, 2172, 2246
AlwNI CAGNNNCTG 2 cut(s) 363, 1580
Ama87I CYCGRG 1 cut(s) 282
Aor13HI TCCGGA 1 cut(s) 1219
AoxI GGCC 3 cut(s) 271, 623, 2037
ApeKI GCWGC 3 cut(s) 501, 978, 2288
ArsI GACNNNNNNTTYG 2 cut(s) 1922, 1954
AsiGI ACCGGT 1 cut(s) 1343
Asp718I GGTACC 1 cut(s) 178
AspS9I GGNCC 3 cut(s) 599, 624, 2038
AsuC2I CCSGG 2 cut(s) 183, 2042
AsuHPI GGTGA 6 cut(s) 124, 847, 1366, 1789, 1862, 2113
AsuII TTCGAA 1 cut(s) 2062
AvaI CYCGRG 1 cut(s) 282
AvaII GGWCC 1 cut(s) 599
BaeI ACNNNNGTAYC 2 cut(s) 495, 528
BanI GGYRCC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 1527
BbsI GAAGAC 2 cut(s) 1450, 1479
Bbv12I GWGCWC 1 cut(s) 1527
BbvI GCAGC 3 cut(s) 513, 965, 2300
BccI CCATC 7 cut(s) 241, 296, 590, 782, 1353, 1809, 2290
BciT130I CCWGG 5 cut(s) 275, 633, 939, 1550, 2108
BclI TGATCA 1 cut(s) 837
BcnI CCSGG 2 cut(s) 183, 2042
BcoDI GTCTC 4 cut(s) 252, 347, 1221, 1738
BfaI CTAG 7 cut(s) 717, 1706, 1841, 1928, 2219, 2261, 2375
BfmI CTRYAG 2 cut(s) 172, 728
BfuAI ACCTGC 1 cut(s) 371
BisI GCNGC 3 cut(s) 502, 979, 2289
BlpI GCTNAGC 1 cut(s) 1858
BlsI GCNGC 3 cut(s) 503, 980, 2290
Bme1390I CCNGG 7 cut(s) 183, 275, 633, 939, 1550, 2042, 2108
Bme18I GGWCC 1 cut(s) 599
BmeT110I CYCGRG 1 cut(s) 282
BmgBI CACGTC 1 cut(s) 1906
BmgT120I GGNCC 3 cut(s) 599, 624, 2038
BmiI GGNNCC 4 cut(s) 180, 307, 2040, 2282
BmrFI CCNGG 7 cut(s) 183, 275, 633, 939, 1550, 2042, 2108
BmsI GCATC 2 cut(s) 946, 1645
BpiI GAAGAC 2 cut(s) 1450, 1479
BplI GAGNNNNNCTC 2 cut(s) 1977, 2009
BpmI CTGGAG 4 cut(s) 897, 1619, 2129, 2168
Bpu1102I GCTNAGC 1 cut(s) 1858
Bpu14I TTCGAA 1 cut(s) 2062
BpuEI CTTGAG 2 cut(s) 1264, 1511
BpuMI CCSGG 2 cut(s) 183, 2042
BsaAI YACGTR 1 cut(s) 162
BsaBI GATNNNNATC 2 cut(s) 792, 1641
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 3 cut(s) 309, 631, 2040
BsaWI WCCGGW 2 cut(s) 1219, 1343
Bsc4I CCNNNNNNNGG 8 cut(s) 243, 348, 632, 653, 1144, 1350, 2046, 2047
Bse118I RCCGGY 2 cut(s) 1137, 1343
Bse1I ACTGG 2 cut(s) 376, 1755
Bse3DI GCAATG 2 cut(s) 1335, 2310
Bse8I GATNNNNATC 2 cut(s) 792, 1641
BseAI TCCGGA 1 cut(s) 1219
BseBI CCWGG 5 cut(s) 275, 633, 939, 1550, 2108
BseDI CCNNGG 3 cut(s) 309, 631, 2040
BseGI GGATG 5 cut(s) 252, 1111, 1609, 1820, 2248
BseJI GATNNNNATC 2 cut(s) 792, 1641
BseLI CCNNNNNNNGG 8 cut(s) 243, 348, 632, 653, 1144, 1350, 2046, 2047
BseMI GCAATG 2 cut(s) 1335, 2310
BseMII CTCAG 5 cut(s) 639, 1743, 1749, 1994, 2024
BseNI ACTGG 2 cut(s) 376, 1755
BseRI GAGGAG 2 cut(s) 464, 1034
BseXI GCAGC 3 cut(s) 513, 965, 2300
BseYI CCCAGC 1 cut(s) 1558
BsgI GTGCAG 2 cut(s) 1052, 1113
BshFI GGCC 3 cut(s) 273, 625, 2039
BshNI GGYRCC 1 cut(s) 178
BshTI ACCGGT 1 cut(s) 1343
BsiHKAI GWGCWC 1 cut(s) 1527
BsiHKCI CYCGRG 1 cut(s) 282
BsiSI CCGG 5 cut(s) 182, 1138, 1220, 1344, 2042
BslFI GGGAC 2 cut(s) 997, 1244
BslI CCNNNNNNNGG 8 cut(s) 243, 348, 632, 653, 1144, 1350, 2046, 2047
BsmAI GTCTC 4 cut(s) 252, 347, 1221, 1738
BsmFI GGGAC 2 cut(s) 997, 1244
BsmI GAATGC 3 cut(s) 1254, 1537, 2124
BsnI GGCC 3 cut(s) 273, 625, 2039
Bso31I GGTCTC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 282
Bsp119I TTCGAA 1 cut(s) 2062
Bsp1286I GDGCHC 1 cut(s) 1527
Bsp13I TCCGGA 1 cut(s) 1219
Bsp143I GATC 7 cut(s) 421, 837, 1058, 1063, 2103, 2164, 2251
Bsp1720I GCTNAGC 1 cut(s) 1858
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 4 cut(s) 78, 386, 769, 1040
BspANI GGCC 3 cut(s) 273, 625, 2039
BspCNI CTCAG 5 cut(s) 640, 1742, 1750, 1993, 2023
BspEI TCCGGA 1 cut(s) 1219
BspLI GGNNCC 4 cut(s) 180, 307, 2040, 2282
BspMAI CTGCAG 1 cut(s) 732
BspMI ACCTGC 1 cut(s) 371
BspPI GGATC 5 cut(s) 416, 1066, 2098, 2172, 2246
BspQI GCTCTTC 2 cut(s) 106, 1548
BspT104I TTCGAA 1 cut(s) 2062
BspT107I GGYRCC 1 cut(s) 178
BspTNI GGTCTC 1 cut(s) 347
BsrBI CCGCTC 1 cut(s) 386
BsrDI GCAATG 2 cut(s) 1335, 2310
BsrFI RCCGGY 2 cut(s) 1137, 1343
BsrI ACTGG 2 cut(s) 376, 1755
BssAI RCCGGY 2 cut(s) 1137, 1343
BssECI CCNNGG 3 cut(s) 309, 631, 2040
BssMI GATC 7 cut(s) 421, 837, 1058, 1063, 2103, 2164, 2251
BssT1I CCWWGG 1 cut(s) 309
Bst2UI CCWGG 5 cut(s) 275, 633, 939, 1550, 2108
Bst4CI ACNGT 5 cut(s) 16, 238, 1901, 1934, 2090
Bst6I CTCTTC 6 cut(s) 106, 520, 1548, 1558, 2154, 2220
BstAPI GCANNNNNTGC 2 cut(s) 956, 1394
BstBAI YACGTR 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 2062
BstC8I GCNNGC 3 cut(s) 849, 983, 1968
BstDEI CTNAG 7 cut(s) 648, 797, 1729, 1758, 1858, 1980, 2010
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 5 cut(s) 252, 1111, 1609, 1820, 2248
BstKTI GATC 7 cut(s) 424, 840, 1061, 1066, 2106, 2167, 2254
BstMAI GTCTC 4 cut(s) 252, 347, 1221, 1738
BstMBI GATC 7 cut(s) 421, 837, 1058, 1063, 2103, 2164, 2251
BstMWI GCNNNNNNNGC 7 cut(s) 372, 956, 1039, 1394, 1664, 1683, 1972
BstNI CCWGG 5 cut(s) 275, 633, 939, 1550, 2108
BstNSI RCATGY 1 cut(s) 1005
BstSCI CCNGG 7 cut(s) 181, 273, 631, 937, 1548, 2040, 2106
BstSFI CTRYAG 2 cut(s) 172, 728
BstV1I GCAGC 3 cut(s) 513, 965, 2300
BstV2I GAAGAC 2 cut(s) 1450, 1479
BstX2I RGATCY 2 cut(s) 421, 1058
BstYI RGATCY 2 cut(s) 421, 1058
BsuRI GGCC 3 cut(s) 273, 625, 2039
BtgI CCRYGG 1 cut(s) 309
BtrI CACGTC 1 cut(s) 1906
BtsCI GGATG 5 cut(s) 252, 1111, 1609, 1820, 2248
BtsIMutI CAGTG 7 cut(s) 369, 462, 742, 1270, 1897, 1939, 2364
BveI ACCTGC 1 cut(s) 371
Cac8I GCNNGC 3 cut(s) 849, 983, 1968
CaiI CAGNNNCTG 2 cut(s) 363, 1580
Cfr10I RCCGGY 2 cut(s) 1137, 1343
Cfr13I GGNCC 3 cut(s) 599, 624, 2038
CseI GACGC 2 cut(s) 284, 1241
Csp6I GTAC 3 cut(s) 179, 432, 999
CspAI ACCGGT 1 cut(s) 1343
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviQI GTAC 3 cut(s) 179, 432, 999
DdeI CTNAG 7 cut(s) 648, 797, 1729, 1758, 1858, 1980, 2010
DpnI GATC 7 cut(s) 423, 839, 1060, 1065, 2105, 2166, 2253
DpnII GATC 7 cut(s) 421, 837, 1058, 1063, 2103, 2164, 2251
DrdI GACNNNNNNGTC 1 cut(s) 807
DseDI GACNNNNNNGTC 1 cut(s) 807
Eam1104I CTCTTC 6 cut(s) 106, 520, 1548, 1558, 2154, 2220
EarI CTCTTC 6 cut(s) 106, 520, 1548, 1558, 2154, 2220
Ecl136II GAGCTC 1 cut(s) 1525
Eco130I CCWWGG 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 1527
Eco31I GGTCTC 1 cut(s) 347
Eco32I GATATC 1 cut(s) 1481
Eco47I GGWCC 1 cut(s) 599
Eco53kI GAGCTC 1 cut(s) 1525
Eco57I CTGAAG 1 cut(s) 1557
Eco88I CYCGRG 1 cut(s) 282
EcoICRI GAGCTC 1 cut(s) 1525
EcoRI GAATTC 1 cut(s) 397
EcoRII CCWGG 5 cut(s) 273, 631, 937, 1548, 2106
EcoRV GATATC 1 cut(s) 1481
EcoT14I CCWWGG 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 1527
ErhI CCWWGG 1 cut(s) 309
FalI AAGNNNNNCTT 4 cut(s) 1555, 1587, 2163, 2195
FaqI GGGAC 2 cut(s) 997, 1244
FauNDI CATATG 1 cut(s) 209
FbaI TGATCA 1 cut(s) 837
Fnu4HI GCNGC 3 cut(s) 502, 979, 2289
FokI GGATG 5 cut(s) 259, 1118, 1616, 1827, 2255
FriOI GRGCYC 1 cut(s) 1527
Fsp4HI GCNGC 3 cut(s) 502, 979, 2289
FspBI CTAG 7 cut(s) 717, 1706, 1841, 1928, 2219, 2261, 2375
GluI GCNGC 3 cut(s) 502, 979, 2289
GsaI CCCAGC 1 cut(s) 1562
GsuI CTGGAG 4 cut(s) 897, 1619, 2129, 2168
HaeIII GGCC 3 cut(s) 273, 625, 2039
HapII CCGG 5 cut(s) 182, 1138, 1220, 1344, 2042
HgaI GACGC 2 cut(s) 284, 1241
HincII GTYRAC 2 cut(s) 379, 774
HindII GTYRAC 2 cut(s) 379, 774
HindIII AAGCTT 2 cut(s) 448, 613
HinfI GANTC 7 cut(s) 168, 278, 1036, 1702, 2014, 2354, 2390
HpaII CCGG 5 cut(s) 182, 1138, 1220, 1344, 2042
HphI GGTGA 6 cut(s) 124, 847, 1366, 1789, 1862, 2113
Hpy166II GTNNAC 5 cut(s) 216, 379, 774, 1797, 2086
Hpy188I TCNGA 9 cut(s) 130, 396, 417, 1063, 1442, 1732, 1759, 1983, 2013
Hpy8I GTNNAC 5 cut(s) 216, 379, 774, 1797, 2086
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 5 cut(s) 1166, 1500, 2069, 2113, 2258
HpyCH4III ACNGT 5 cut(s) 16, 238, 1901, 1934, 2090
HpyCH4IV ACGT 2 cut(s) 161, 1905
HpyF10VI GCNNNNNNNGC 7 cut(s) 372, 956, 1039, 1394, 1664, 1683, 1972
HpyF3I CTNAG 7 cut(s) 648, 797, 1729, 1758, 1858, 1980, 2010
HpySE526I ACGT 2 cut(s) 161, 1905
Kpn2I TCCGGA 1 cut(s) 1219
KpnI GGTACC 1 cut(s) 182
Ksp22I TGATCA 1 cut(s) 837
Kzo9I GATC 7 cut(s) 421, 837, 1058, 1063, 2103, 2164, 2251
LguI GCTCTTC 2 cut(s) 106, 1548
LmnI GCTCC 4 cut(s) 311, 371, 388, 2334
Lsp1109I GCAGC 3 cut(s) 513, 965, 2300
LweI GCATC 2 cut(s) 946, 1645
MaeI CTAG 7 cut(s) 717, 1706, 1841, 1928, 2219, 2261, 2375
MaeII ACGT 2 cut(s) 161, 1905
MaeIII GTNAC 4 cut(s) 962, 1181, 1459, 1901
MalI GATC 7 cut(s) 423, 839, 1060, 1065, 2105, 2166, 2253
MbiI CCGCTC 1 cut(s) 386
MboI GATC 7 cut(s) 421, 837, 1058, 1063, 2103, 2164, 2251
MfeI CAATTG 1 cut(s) 1680
MflI RGATCY 2 cut(s) 421, 1058
MhlI GDGCHC 1 cut(s) 1527
MroI TCCGGA 1 cut(s) 1219
MseI TTAA 3 cut(s) 813, 1074, 2301
MslI CAYNNNNRTG 4 cut(s) 160, 922, 1452, 2000
MspI CCGG 5 cut(s) 182, 1138, 1220, 1344, 2042
MspR9I CCNGG 7 cut(s) 183, 275, 633, 939, 1550, 2042, 2108
MunI CAATTG 1 cut(s) 1680
Mva1269I GAATGC 3 cut(s) 1254, 1537, 2124
MvaI CCWGG 5 cut(s) 275, 633, 939, 1550, 2108
MwoI GCNNNNNNNGC 7 cut(s) 372, 956, 1039, 1394, 1664, 1683, 1972
NciI CCSGG 2 cut(s) 183, 2042
NcoI CCATGG 1 cut(s) 309
NdeI CATATG 1 cut(s) 209
NdeII GATC 7 cut(s) 421, 837, 1058, 1063, 2103, 2164, 2251
NlaIV GGNNCC 4 cut(s) 180, 307, 2040, 2282
NmuCI GTSAC 1 cut(s) 1901
NspI RCATGY 1 cut(s) 1005
NspV TTCGAA 1 cut(s) 2062
OliI CACNNNNGTG 1 cut(s) 922
PaqCI CACCTGC 1 cut(s) 371
PciSI GCTCTTC 2 cut(s) 106, 1548
PctI GAATGC 3 cut(s) 1254, 1537, 2124
PfeI GAWTC 7 cut(s) 168, 278, 1036, 1702, 2014, 2354, 2390
PflMI CCANNNNNTGG 1 cut(s) 348
PfoI TCCNGGA 2 cut(s) 1548, 2106
PinAI ACCGGT 1 cut(s) 1343
PkrI GCNGC 3 cut(s) 503, 980, 2290
Ppu21I YACGTR 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 1527
Psp6I CCWGG 5 cut(s) 273, 631, 937, 1548, 2106
PspFI CCCAGC 1 cut(s) 1558
PspGI CCWGG 5 cut(s) 273, 631, 937, 1548, 2106
PspN4I GGNNCC 4 cut(s) 180, 307, 2040, 2282
PspPI GGNCC 3 cut(s) 599, 624, 2038
PstI CTGCAG 1 cut(s) 732
PstNI CAGNNNCTG 2 cut(s) 363, 1580
PsuI RGATCY 2 cut(s) 421, 1058
RsaI GTAC 3 cut(s) 180, 433, 1000
RsaNI GTAC 3 cut(s) 179, 432, 999
RseI CAYNNNNRTG 4 cut(s) 160, 922, 1452, 2000
SacI GAGCTC 1 cut(s) 1527
SapI GCTCTTC 2 cut(s) 106, 1548
SaqAI TTAA 3 cut(s) 813, 1074, 2301
SatI GCNGC 3 cut(s) 502, 979, 2289
Sau3AI GATC 7 cut(s) 421, 837, 1058, 1063, 2103, 2164, 2251
Sau96I GGNCC 3 cut(s) 599, 624, 2038
ScrFI CCNGG 7 cut(s) 183, 275, 633, 939, 1550, 2042, 2108
SduI GDGCHC 1 cut(s) 1527
SfaNI GCATC 2 cut(s) 946, 1645
SfcI CTRYAG 2 cut(s) 172, 728
SfuI TTCGAA 1 cut(s) 2062
SinI GGWCC 1 cut(s) 599
SmiMI CAYNNNNRTG 4 cut(s) 160, 922, 1452, 2000
SmlI CTYRAG 2 cut(s) 1243, 1526
SmoI CTYRAG 2 cut(s) 1243, 1526
SsiI CCGC 4 cut(s) 78, 386, 769, 1040
SspI AATATT 1 cut(s) 1289
SspMI CTAG 7 cut(s) 717, 1706, 1841, 1928, 2219, 2261, 2375
SstI GAGCTC 1 cut(s) 1527
StyD4I CCNGG 7 cut(s) 181, 273, 631, 937, 1548, 2040, 2106
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 5 cut(s) 16, 238, 1901, 1934, 2090
TaiI ACGT 2 cut(s) 164, 1908
TaqI TCGA 8 cut(s) 298, 744, 755, 954, 1007, 2017, 2062, 2128
TfiI GAWTC 7 cut(s) 168, 278, 1036, 1702, 2014, 2354, 2390
Tru1I TTAA 3 cut(s) 813, 1074, 2301
Tru9I TTAA 3 cut(s) 813, 1074, 2301
TscAI CASTG 7 cut(s) 376, 469, 742, 1270, 1904, 1939, 2364
TseFI GTSAC 1 cut(s) 1901
TseI GCWGC 3 cut(s) 501, 978, 2288
Tsp45I GTSAC 1 cut(s) 1901
TspGWI ACGGA 1 cut(s) 1491
TspRI CASTG 7 cut(s) 376, 469, 742, 1270, 1904, 1939, 2364
Van91I CCANNNNNTGG 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 599
XceI RCATGY 1 cut(s) 1005
XspI CTAG 7 cut(s) 717, 1706, 1841, 1928, 2219, 2261, 2375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.