MD12G1151400.v1.1

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000166
Physical Location & Seq
Forward (+)
23127432 .. 23127740
309 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1151400.v1.1.491

Sequence Viewer

Length: 309 bp
ATGTATAAAGGGGTCCTAGATGACGAAAAAGTTGTAGTTGTGAAGAGACTAGATGGTGTCTTGCAAGGAGATGTAGAGTTTTGGGTAGAGGCGAGTGTGATAAGGAATATCAATCAACGAAACTTGGTTAAACTGTGGGGTTTCTGCGCGGACAATCAGCATAAGCTTCTCGTCTATGAGTACCTCGAGAATGGATCATTGGACAAAATCTTGTTCTCAGATGCGGAACTAGGATTGGAGCAGAGATACAAGATTGCACTAGGCATTGCAAAGGGTTTGTCGTATTTACACGAGGAATGCCTCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

103

Amino Acids

11.72

Weight (kDa)

5.01

Isoelectric Point (pI)

27.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 3 - 100 9.7e-13 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 7 - 99 6.3e-16 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 149
AciI CCGC 2 cut(s) 149, 224
AclWI GGATC 1 cut(s) 202
AfaI GTAC 1 cut(s) 182
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
Alw26I GTCTC 1 cut(s) 40
AlwI GGATC 1 cut(s) 202
Ama87I CYCGRG 1 cut(s) 185
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 13
AvaI CYCGRG 1 cut(s) 185
AvaII GGWCC 1 cut(s) 13
BauI CACGAG 1 cut(s) 290
BccI CCATC 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 4 cut(s) 17, 50, 230, 260
Bme18I GGWCC 1 cut(s) 13
BmeT110I CYCGRG 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 14
BmsI GCATC 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 264
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 302
BsoBI CYCGRG 1 cut(s) 185
Bsp143I GATC 1 cut(s) 194
BspACI CCGC 2 cut(s) 149, 224
BspCNI CTCAG 1 cut(s) 230
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 14
BspPI GGATC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 264
BssMI GATC 1 cut(s) 194
BssSI CACGAG 1 cut(s) 290
Bst2BI CACGAG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 1 cut(s) 197
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 1 cut(s) 194
BstUI CGCG 1 cut(s) 149
CfoI GCGC 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 181
CviJI RGCY 1 cut(s) 166
CviKI_1 RGCY 1 cut(s) 166
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 217
DpnI GATC 1 cut(s) 196
DpnII GATC 1 cut(s) 194
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 13
Eco88I CYCGRG 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 13
FaiI YATR 3 cut(s) 6, 162, 177
FspBI CTAG 4 cut(s) 17, 50, 230, 260
GlaI GCGC 1 cut(s) 148
HhaI GCGC 1 cut(s) 149
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4V TGCA 3 cut(s) 64, 257, 269
HpyF3I CTNAG 1 cut(s) 217
HspAI GCGC 1 cut(s) 147
Kzo9I GATC 1 cut(s) 194
LmnI GCTCC 1 cut(s) 238
LweI GCATC 1 cut(s) 211
MaeI CTAG 4 cut(s) 17, 50, 230, 260
MalI GATC 1 cut(s) 196
MboI GATC 1 cut(s) 194
MboII GAAGA 1 cut(s) 55
MnlI CCTC 3 cut(s) 82, 194, 286
MseI TTAA 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 302
MvnI CGCG 1 cut(s) 149
NdeII GATC 1 cut(s) 194
NlaIV GGNNCC 1 cut(s) 14
PaeR7I CTCGAG 1 cut(s) 185
PctI GAATGC 1 cut(s) 302
PpuMI RGGWCCY 1 cut(s) 13
Psp5II RGGWCCY 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 14
PspPI GGNCC 1 cut(s) 13
PspPPI RGGWCCY 1 cut(s) 13
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 129
Sau3AI GATC 1 cut(s) 194
Sau96I GGNCC 1 cut(s) 13
SetI ASST 2 cut(s) 168, 186
SfaNI GCATC 1 cut(s) 211
Sfr274I CTCGAG 1 cut(s) 185
SinI GGWCC 1 cut(s) 13
SlaI CTCGAG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SsiI CCGC 2 cut(s) 149, 224
SspMI CTAG 4 cut(s) 17, 50, 230, 260
TaaI ACNGT 1 cut(s) 135
TaqI TCGA 2 cut(s) 186, 303
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 185
XspI CTAG 4 cut(s) 17, 50, 230, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.