FvH4_5g04300

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000166
Physical Location & Seq
Reverse (-)
2554423 .. 2555765
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g04300.t1

Sequence Viewer

Length: 1191 bp
ATGGATTTGATCTCAACTTCAGTGACTCCAATACATGGGAAAATTGCAGCAAACTCTGCGCAGACGATTGTCGTTGTGGAAGCATTTCAATATAAGCTAGCAAGTTCTCAGCCAGCAGGAGAAGCGAAAACTTTGTGCTTCACAAAACGTTCTCTTTTCAGTGGGCACAAGTCTCCGAATTTCCAAGGCAGCTTATGCTTCAAACTACCTCGTAGTATGAATACATCAGTACCTGCCAAGCTCAGTGTGACTGAACCATGCATGACCATTGAGACCAAGCATGTACGTTCAATGTATGACAAAGCTACCAAAAAGAATGTACCTCTATTCCGAGCTCAAGAAGGCACTCAAAACTTCAAGGAAGAGGTGGGAAGAGGGGCTTCTGGAACAGTGTATAAGGGTGTTCTAGAAGACAAAAGAGTTGTATCTGTCAAGAAATTGGGAGATATTTATCATGCAGAGGATGTGTTTTGGGCAGAAGTAACCACAATCGGAAAAATCCATCGCATGAATCTAGTGAGGACGTGGGGATATTGTTCAGAAAATAAACATAGGCTCCTGATCACTGAGTACATCGAAAATGGATCTTTGGACAAGCATTTGTTCCCTCCAAGTTTTCTTGCATGGAAAGAGAGGTTTAAAGTTGCAATGGGGATAGCTAAAGGCTTGGCCTATCTCCACCATGAGTGTCTAGAGTGGGTTATCCATTGTGATGTGAAGCCAGAAAATGTACTCTTAGGCAGTGACTTTGAGCCAAAGATAGCAGATTTTGGGCTTTCAAAGTTATCGCAGAGAGGCGGTCGCGATTCACAGTTCTCTCAAATGAGAGGAACAAAAGGGTACATGGCTCCAGAGTGGGCTTCTAACCTTCCGATCACTGCAAAGGTTGATGTGTACAGTTATGGAGTGATGATTCTAGAGATTGTTAAGGGCATTCGGCTCTCGAATTGGGTGATGGAGGACGATGAGGAGATAGAAACAGAGCTGACTAGGTTTGTCAGGGTAGCAAAACGTGGTATTCAATGTGGAGAAGAGTCATGGATAGAGGACATGTTAGATTCAAGATTGGATGGTGAATACAGCAGGAGCCAAGCAGCAAAGATGGTTGAGATCGGCATTTCTTGTGTGGAGGAAGATAGGTCTAAAAGACCAACAATGGATGTAGTAGTACAAATGTTGATAGAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

397

Amino Acids

44.62

Weight (kDa)

7.58

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 119 - 391 4.2e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 119 - 392 2.3e-38 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 60
Acc36I ACCTGC 1 cut(s) 241
AccB7I CCANNNNNTGG 1 cut(s) 35
AccII CGCG 1 cut(s) 804
AciI CCGC 1 cut(s) 798
AclI AACGTT 1 cut(s) 148
AclWI GGATC 1 cut(s) 592
AcsI RAATTY 1 cut(s) 178
AfaI GTAC 8 cut(s) 231, 285, 321, 572, 732, 842, 896, 1170
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 1050
AgsI TTSAA 7 cut(s) 89, 202, 291, 358, 780, 1022, 1062
AjiI CACGTC 1 cut(s) 525
AluBI AGCT 7 cut(s) 97, 192, 241, 305, 335, 659, 985
AluI AGCT 7 cut(s) 97, 192, 241, 305, 335, 659, 985
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 2 cut(s) 177, 266
AlwI GGATC 1 cut(s) 592
AlwNI CAGNNNCTG 1 cut(s) 233
AoxI GGCC 1 cut(s) 669
ApeKI GCWGC 3 cut(s) 47, 189, 1094
ApoI RAATTY 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 964, 1085
AsuNHI GCTAGC 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 168
BaeI ACNNNNGTAYC 2 cut(s) 213, 246
BanII GRGCYC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 337
BbvI GCAGC 3 cut(s) 59, 201, 1106
BccI CCATC 4 cut(s) 510, 949, 1064, 1096
BclI TGATCA 1 cut(s) 561
BcoDI GTCTC 2 cut(s) 177, 266
BfaI CTAG 6 cut(s) 98, 407, 515, 692, 917, 990
BfuAI ACCTGC 1 cut(s) 241
BisI GCNGC 3 cut(s) 48, 190, 1095
BlsI GCNGC 3 cut(s) 49, 191, 1096
BmgBI CACGTC 1 cut(s) 525
BmiI GGNNCC 3 cut(s) 557, 849, 1088
BmtI GCTAGC 1 cut(s) 101
BoxI GACNNNNGTC 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 417
BpmI CTGGAG 1 cut(s) 834
BpuEI CTTGAG 1 cut(s) 321
BsaBI GATNNNNATC 1 cut(s) 450
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 184
BsaXI ACNNNNNCTCC 2 cut(s) 540, 570
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 654
Bse8I GATNNNNATC 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 3 cut(s) 469, 1075, 1165
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMI GCAATG 1 cut(s) 654
BseMII CTCAG 3 cut(s) 122, 256, 558
BseRI GAGGAG 1 cut(s) 983
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 3 cut(s) 59, 201, 1106
Bsh1236I CGCG 1 cut(s) 804
Bsh1285I CGRYCG 1 cut(s) 802
BshFI GGCC 1 cut(s) 671
BsiEI CGRYCG 1 cut(s) 802
BsiHKAI GWGCWC 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 2 cut(s) 177, 266
BsmI GAATGC 1 cut(s) 933
BsnI GGCC 1 cut(s) 671
Bso31I GGTCTC 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 168, 337
Bsp1407I TGTACA 1 cut(s) 894
Bsp143I GATC 5 cut(s) 9, 561, 584, 873, 1110
Bsp68I TCGCGA 1 cut(s) 804
BspACI CCGC 1 cut(s) 798
BspANI GGCC 1 cut(s) 671
BspCNI CTCAG 3 cut(s) 121, 255, 559
BspFNI CGCG 1 cut(s) 804
BspLI GGNNCC 3 cut(s) 557, 849, 1088
BspMI ACCTGC 1 cut(s) 241
BspOI GCTAGC 1 cut(s) 101
BspPI GGATC 1 cut(s) 592
BspTNI GGTCTC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 654
BsrGI TGTACA 1 cut(s) 894
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 5 cut(s) 9, 561, 584, 873, 1110
BssT1I CCWWGG 1 cut(s) 184
Bst4CI ACNGT 3 cut(s) 391, 813, 899
Bst6I CTCTTC 3 cut(s) 357, 367, 1026
BstAPI GCANNNNNTGC 2 cut(s) 56, 195
BstAUI TGTACA 1 cut(s) 894
BstC8I GCNNGC 2 cut(s) 99, 114
BstDEI CTNAG 4 cut(s) 108, 242, 567, 736
BstF5I GGATG 3 cut(s) 469, 1075, 1165
BstFNI CGCG 1 cut(s) 804
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 5 cut(s) 12, 564, 587, 876, 1113
BstMAI GTCTC 2 cut(s) 177, 266
BstMBI GATC 5 cut(s) 9, 561, 584, 873, 1110
BstMCI CGRYCG 1 cut(s) 802
BstMWI GCNNNNNNNGC 3 cut(s) 56, 122, 195
BstNSI RCATGY 2 cut(s) 284, 1054
BstPAI GACNNNNGTC 1 cut(s) 68
BstSLI GKGCMC 1 cut(s) 168
BstUI CGCG 1 cut(s) 804
BstV1I GCAGC 3 cut(s) 59, 201, 1106
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 584
BstYI RGATCY 1 cut(s) 584
BsuRI GGCC 1 cut(s) 671
BtgZI GCGATG 1 cut(s) 488
BtrI CACGTC 1 cut(s) 525
BtsCI GGATG 3 cut(s) 469, 1075, 1165
BtsI GCAGTG 2 cut(s) 748, 876
BtsIMutI CAGTG 7 cut(s) 27, 166, 250, 396, 564, 748, 876
BtuMI TCGCGA 1 cut(s) 804
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 2 cut(s) 99, 114
CaiI CAGNNNCTG 1 cut(s) 233
CfoI GCGC 1 cut(s) 61
Csp6I GTAC 8 cut(s) 230, 284, 320, 571, 731, 841, 895, 1169
CviQI GTAC 8 cut(s) 230, 284, 320, 571, 731, 841, 895, 1169
DdeI CTNAG 4 cut(s) 108, 242, 567, 736
DpnI GATC 5 cut(s) 11, 563, 586, 875, 1112
DpnII GATC 5 cut(s) 9, 561, 584, 873, 1110
DraI TTTAAA 1 cut(s) 640
Eam1104I CTCTTC 3 cut(s) 357, 367, 1026
EarI CTCTTC 3 cut(s) 357, 367, 1026
Ecl136II GAGCTC 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 266
Eco53kI GAGCTC 1 cut(s) 335
EcoICRI GAGCTC 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 184
EcoT22I ATGCAT 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 184
FalI AAGNNNNNCTT 2 cut(s) 364, 396
FbaI TGATCA 1 cut(s) 561
Fnu4HI GCNGC 3 cut(s) 48, 190, 1095
FokI GGATG 3 cut(s) 476, 1082, 1172
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 3 cut(s) 48, 190, 1095
FspBI CTAG 6 cut(s) 98, 407, 515, 692, 917, 990
FspI TGCGCA 1 cut(s) 60
GlaI GCGC 1 cut(s) 60
GluI GCNGC 3 cut(s) 48, 190, 1095
GsuI CTGGAG 1 cut(s) 834
HaeIII GGCC 1 cut(s) 671
HhaI GCGC 1 cut(s) 61
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 6 cut(s) 25, 511, 806, 913, 1034, 1058
HphI GGTGA 2 cut(s) 964, 1085
Hpy166II GTNNAC 1 cut(s) 895
Hpy188I TCNGA 5 cut(s) 177, 332, 494, 541, 873
Hpy8I GTNNAC 1 cut(s) 895
HpyAV CCTTC 2 cut(s) 335, 878
HpyCH4III ACNGT 3 cut(s) 391, 813, 899
HpyCH4IV ACGT 4 cut(s) 148, 286, 524, 1012
HpyCH4V TGCA 6 cut(s) 47, 261, 458, 623, 647, 881
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 122, 195
HpyF3I CTNAG 4 cut(s) 108, 242, 567, 736
HpySE526I ACGT 4 cut(s) 148, 286, 524, 1012
HspAI GCGC 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 561
Kzo9I GATC 5 cut(s) 9, 561, 584, 873, 1110
LmnI GCTCC 3 cut(s) 561, 853, 1086
LpnPI CCDG 9 cut(s) 102, 126, 246, 369, 572, 735, 864, 985, 1069
Lsp1109I GCAGC 3 cut(s) 59, 201, 1106
MaeI CTAG 6 cut(s) 98, 407, 515, 692, 917, 990
MaeII ACGT 4 cut(s) 148, 286, 524, 1012
MaeIII GTNAC 4 cut(s) 22, 247, 481, 743
MalI GATC 5 cut(s) 11, 563, 586, 875, 1112
MboI GATC 5 cut(s) 9, 561, 584, 873, 1110
MboII GAAGA 5 cut(s) 374, 384, 422, 1043, 1145
MflI RGATCY 1 cut(s) 584
MhlI GDGCHC 2 cut(s) 168, 337
MluCI AATT 4 cut(s) 42, 178, 437, 946
MlyI GAGTC 2 cut(s) 19, 1043
Mph1103I ATGCAT 1 cut(s) 263
MroXI GAANNNNTTC 1 cut(s) 84
MseI TTAA 3 cut(s) 639, 927, 1189
MslI CAYNNNNRTG 1 cut(s) 711
Mva1269I GAATGC 1 cut(s) 933
MvnI CGCG 1 cut(s) 804
MwoI GCNNNNNNNGC 3 cut(s) 56, 122, 195
NdeII GATC 5 cut(s) 9, 561, 584, 873, 1110
NheI GCTAGC 1 cut(s) 97
NlaIV GGNNCC 3 cut(s) 557, 849, 1088
NmuCI GTSAC 3 cut(s) 22, 247, 743
NruI TCGCGA 1 cut(s) 804
NsbI TGCGCA 1 cut(s) 60
NsiI ATGCAT 1 cut(s) 263
NspI RCATGY 2 cut(s) 284, 1054
PciI ACATGT 1 cut(s) 1050
PctI GAATGC 1 cut(s) 933
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 4 cut(s) 511, 806, 913, 1058
PflMI CCANNNNNTGG 1 cut(s) 35
PkrI GCNGC 3 cut(s) 49, 191, 1096
PleI GAGTC 2 cut(s) 19, 1042
PpsI GAGTC 2 cut(s) 19, 1042
PscI ACATGT 1 cut(s) 1050
PshAI GACNNNNGTC 1 cut(s) 68
Psp124BI GAGCTC 1 cut(s) 337
Psp1406I AACGTT 1 cut(s) 148
PspN4I GGNNCC 3 cut(s) 557, 849, 1088
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 1 cut(s) 584
RruI TCGCGA 1 cut(s) 804
RsaI GTAC 8 cut(s) 231, 285, 321, 572, 732, 842, 896, 1170
RsaNI GTAC 8 cut(s) 230, 284, 320, 571, 731, 841, 895, 1169
RseI CAYNNNNRTG 1 cut(s) 711
SacI GAGCTC 1 cut(s) 337
SaqAI TTAA 3 cut(s) 639, 927, 1189
SatI GCNGC 3 cut(s) 48, 190, 1095
Sau3AI GATC 5 cut(s) 9, 561, 584, 873, 1110
SchI GAGTC 2 cut(s) 19, 1043
SduI GDGCHC 2 cut(s) 168, 337
SmiMI CAYNNNNRTG 1 cut(s) 711
SmlI CTYRAG 1 cut(s) 336
SmoI CTYRAG 1 cut(s) 336
Sse9I AATT 4 cut(s) 42, 178, 437, 946
SsiI CCGC 1 cut(s) 798
SspMI CTAG 6 cut(s) 98, 407, 515, 692, 917, 990
SstI GAGCTC 1 cut(s) 337
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 3 cut(s) 391, 813, 899
TaiI ACGT 4 cut(s) 151, 289, 527, 1015
TaqI TCGA 2 cut(s) 576, 944
TasI AATT 4 cut(s) 42, 178, 437, 946
TatI WGTACW 4 cut(s) 570, 730, 894, 1168
TfiI GAWTC 4 cut(s) 511, 806, 913, 1058
Tru1I TTAA 3 cut(s) 639, 927, 1189
Tru9I TTAA 3 cut(s) 639, 927, 1189
TscAI CASTG 7 cut(s) 27, 166, 250, 396, 571, 748, 883
TseFI GTSAC 3 cut(s) 22, 247, 743
TseI GCWGC 3 cut(s) 47, 189, 1094
Tsp45I GTSAC 3 cut(s) 22, 247, 743
TspDTI ATGAA 2 cut(s) 233, 524
TspRI CASTG 7 cut(s) 27, 166, 250, 396, 571, 748, 883
Van91I CCANNNNNTGG 1 cut(s) 35
XapI RAATTY 1 cut(s) 178
XbaI TCTAGA 3 cut(s) 406, 691, 916
XceI RCATGY 2 cut(s) 284, 1054
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 6 cut(s) 98, 407, 515, 692, 917, 990
Zsp2I ATGCAT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.