FvH4_5g04230

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000166
Physical Location & Seq
Reverse (-)
2511021 .. 2511389
369 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g04230.t1

Sequence Viewer

Length: 369 bp
ATGAGAGGAACAAAAGGGTATATGGCTCCAGAGTGGGTTTCTAACCTTCCAATCACTGCAAAAGTTGATGTGTACAGTTATGGAGTTTTGATTCTAGAGATTGTGAAGGGCATTCGGCTCTCGAATTGGGTGGTAGAGGAGGATGAAGAGATAGAAACAGAGCTGACTAGGTTTGTCAGGGTAGCAAAACACAGAATTCAATGTGGAGAAGAGTCATGGATAGAGGATATGTTGGATCCAAGATTGGATGGTGTATACAGCAGGAGCCAAGCAGCAAAGATGGTTGAGATTGGCATTTCTTGTGTGGAGGAAGATAGGTCTAAAAGACCAACAATGGACGCAGTAGTACGAATGTTGCTAGAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

123

Amino Acids

14.01

Weight (kDa)

4.87

Isoelectric Point (pI)

57.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 117 1.9e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 7 - 118 7.7e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 255
AclWI GGATC 2 cut(s) 230, 243
AcsI RAATTY 1 cut(s) 195
AfaI GTAC 2 cut(s) 74, 348
AgsI TTSAA 1 cut(s) 200
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
AlwI GGATC 2 cut(s) 230, 243
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 1 cut(s) 195
BamHI GGATCC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 284
BccI CCATC 2 cut(s) 242, 274
BfaI CTAG 3 cut(s) 95, 168, 359
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
BmiI GGNNCC 3 cut(s) 27, 237, 266
BpmI CTGGAG 1 cut(s) 12
BseGI GGATG 2 cut(s) 148, 253
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 284
BsmI GAATGC 1 cut(s) 111
Bsp1407I TGTACA 1 cut(s) 72
Bsp143I GATC 1 cut(s) 235
BspLI GGNNCC 3 cut(s) 27, 237, 266
BspPI GGATC 2 cut(s) 230, 243
BsrGI TGTACA 1 cut(s) 72
BssMI GATC 1 cut(s) 235
BssNAI GTATAC 1 cut(s) 256
Bst1107I GTATAC 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 2 cut(s) 141, 204
BstAUI TGTACA 1 cut(s) 72
BstF5I GGATG 2 cut(s) 148, 253
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BstZ17I GTATAC 1 cut(s) 256
BtsCI GGATG 2 cut(s) 148, 253
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
CseI GACGC 1 cut(s) 347
Csp6I GTAC 2 cut(s) 73, 347
CviAII CATG 1 cut(s) 216
CviJI RGCY 4 cut(s) 26, 118, 163, 267
CviKI_1 RGCY 4 cut(s) 26, 118, 163, 267
CviQI GTAC 2 cut(s) 73, 347
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
Eam1104I CTCTTC 2 cut(s) 141, 204
EarI CTCTTC 2 cut(s) 141, 204
EcoRI GAATTC 1 cut(s) 195
FaeI CATG 1 cut(s) 219
FaiI YATR 6 cut(s) 21, 23, 81, 217, 230, 256
FatI CATG 1 cut(s) 215
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 2 cut(s) 155, 260
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 3 cut(s) 95, 168, 359
GluI GCNGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 12
HgaI GACGC 1 cut(s) 347
Hin1II CATG 1 cut(s) 219
HinfI GANTC 2 cut(s) 91, 212
Hpy166II GTNNAC 2 cut(s) 73, 256
Hpy188III TCNNGA 3 cut(s) 29, 95, 121
Hpy8I GTNNAC 2 cut(s) 73, 256
HpyAV CCTTC 2 cut(s) 56, 100
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4V TGCA 1 cut(s) 59
Hsp92II CATG 1 cut(s) 219
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 2 cut(s) 31, 264
LpnPI CCDG 3 cut(s) 42, 163, 247
Lsp1109I GCAGC 1 cut(s) 284
MaeI CTAG 3 cut(s) 95, 168, 359
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 3 cut(s) 158, 221, 323
MflI RGATCY 1 cut(s) 235
MluCI AATT 2 cut(s) 124, 195
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 4 cut(s) 130, 133, 217, 301
Mva1269I GAATGC 1 cut(s) 111
NdeII GATC 1 cut(s) 235
NlaIII CATG 1 cut(s) 219
NlaIV GGNNCC 3 cut(s) 27, 237, 266
PctI GAATGC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PspN4I GGNNCC 3 cut(s) 27, 237, 266
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 2 cut(s) 74, 348
RsaNI GTAC 2 cut(s) 73, 347
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 1 cut(s) 235
SchI GAGTC 1 cut(s) 221
SetI ASST 4 cut(s) 48, 165, 173, 320
Sse9I AATT 2 cut(s) 124, 195
SspMI CTAG 3 cut(s) 95, 168, 359
TaaI ACNGT 1 cut(s) 77
TaqI TCGA 1 cut(s) 122
TasI AATT 2 cut(s) 124, 195
TatI WGTACW 1 cut(s) 72
TfiI GAWTC 1 cut(s) 91
TscAI CASTG 1 cut(s) 61
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 1 cut(s) 61
XapI RAATTY 1 cut(s) 195
XbaI TCTAGA 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 3 cut(s) 95, 168, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.