MD15G1076100.v1.1

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000166
Physical Location & Seq
Reverse (-)
5177973 .. 5178679
707 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1076100.v1.1.491

Sequence Viewer

Length: 603 bp
ATGAGGATATGCAGGGGTACGTTCTTGCTGCATGGGTTCAAAAGATTCAGCTACACCGAGCCCAAGAAGGCGACGCGTGGTTTTAGTGAAGAGATTGGAAGAGGGGCAGGAGGAATAGTGTACAAAGGTGTATTGCCTGATCAGAGAGTTGCCGCGATTAAGCTCCTTAACGAGGTTGATCAAGGAGAAGCTGAATTTCTAGGTGAAGCTAACACAGTTGGGAGGTTGAATCATATGCACTTGATTGACATGTTTGAGATTGCTGTCAGGACTGCGATAGGCCTTGCTTGTCGGCATGAAGTGTGTTTGGAGTGGGTTTTGCACTGTGATGTTAAGCTTCAAAACACACCCTTGGACTCAAATTACCAACCGAAGGTTGCAGATTTTGGACTCTCCAAGCTAATCAACAGGGACGGCCTAAAAAAATCGAGCTTTTCGAGGATACGAGGAACGAGAGGATACATTGCACCGGACTGGGTGTACAACCAGCCGATTACGTCGAAAGTGGATGTTTACAGCAATGAAAGTGGTGCGATTGGATCAAGGATGGGAGAGATCATAGACCGTTCATTTGGAGGGAATTATGATGTGAGAAAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

201

Amino Acids

22.38

Weight (kDa)

9.04

Isoelectric Point (pI)

21.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 92 - 173 3e-14 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 76, 155
AciI CCGC 1 cut(s) 153
AclWI GGATC 1 cut(s) 547
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 3 cut(s) 19, 122, 482
AfiI CCNNNNNNNGG 2 cut(s) 172, 373
AflIII ACRYGT 2 cut(s) 74, 249
AgsI TTSAA 3 cut(s) 40, 229, 341
AluBI AGCT 7 cut(s) 51, 163, 191, 209, 337, 400, 432
AluI AGCT 7 cut(s) 51, 163, 191, 209, 337, 400, 432
AlwI GGATC 1 cut(s) 547
AoxI GGCC 2 cut(s) 280, 415
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 194
ArsI GACNNNNNNTTYG 2 cut(s) 554, 586
AsuHPI GGTGA 1 cut(s) 215
BanII GRGCYC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 15
BccI CCATC 1 cut(s) 541
BceAI ACGGC 1 cut(s) 430
BciVI GTATCC 2 cut(s) 435, 452
BclI TGATCA 2 cut(s) 139, 178
BfaI CTAG 1 cut(s) 200
BfuI GTATCC 2 cut(s) 435, 452
BisI GCNGC 2 cut(s) 29, 153
BlsI GCNGC 2 cut(s) 30, 154
BmrI ACTGGG 1 cut(s) 484
BmuI ACTGGG 1 cut(s) 484
BsaJI CCNNGG 1 cut(s) 351
BsaWI WCCGGW 1 cut(s) 469
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 373
Bse1I ACTGG 1 cut(s) 479
Bse3DI GCAATG 2 cut(s) 462, 526
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 2 cut(s) 514, 552
BseLI CCNNNNNNNGG 2 cut(s) 172, 373
BseMI GCAATG 2 cut(s) 462, 526
BseNI ACTGG 1 cut(s) 479
BseXI GCAGC 1 cut(s) 15
Bsh1236I CGCG 2 cut(s) 76, 155
BshFI GGCC 2 cut(s) 282, 417
BsiSI CCGG 1 cut(s) 470
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 2 cut(s) 172, 373
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 2 cut(s) 282, 417
Bsp1286I GDGCHC 1 cut(s) 63
Bsp1407I TGTACA 2 cut(s) 120, 480
Bsp143I GATC 4 cut(s) 139, 178, 539, 555
BspACI CCGC 1 cut(s) 153
BspANI GGCC 2 cut(s) 282, 417
BspFNI CGCG 2 cut(s) 76, 155
BspPI GGATC 1 cut(s) 547
BsrDI GCAATG 2 cut(s) 462, 526
BsrGI TGTACA 2 cut(s) 120, 480
BsrI ACTGG 1 cut(s) 479
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 4 cut(s) 139, 178, 539, 555
BssT1I CCWWGG 1 cut(s) 351
Bst4CI ACNGT 3 cut(s) 217, 326, 566
Bst6I CTCTTC 2 cut(s) 84, 94
BstAUI TGTACA 2 cut(s) 120, 480
BstENI CCTNNNNNAGG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 514, 552
BstFNI CGCG 2 cut(s) 76, 155
BstKTI GATC 4 cut(s) 142, 181, 542, 558
BstMBI GATC 4 cut(s) 139, 178, 539, 555
BstNSI RCATGY 1 cut(s) 253
BstUI CGCG 2 cut(s) 76, 155
BstV1I GCAGC 1 cut(s) 15
BsuI GTATCC 2 cut(s) 435, 452
BsuRI GGCC 2 cut(s) 282, 417
BtsCI GGATG 2 cut(s) 514, 552
BtsIMutI CAGTG 1 cut(s) 322
CseI GACGC 1 cut(s) 82
Csp6I GTAC 3 cut(s) 18, 121, 481
CspCI CAANNNNNGTGG 2 cut(s) 508, 543
CviAII CATG 3 cut(s) 32, 250, 296
CviQI GTAC 3 cut(s) 18, 121, 481
DpnI GATC 4 cut(s) 141, 180, 541, 557
DpnII GATC 4 cut(s) 139, 178, 539, 555
Eam1104I CTCTTC 2 cut(s) 84, 94
EarI CTCTTC 2 cut(s) 84, 94
Eco130I CCWWGG 1 cut(s) 351
Eco147I AGGCCT 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 63
EcoNI CCTNNNNNAGG 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 3 cut(s) 35, 253, 299
FaiI YATR 9 cut(s) 10, 33, 234, 236, 251, 297, 560, 585, 601
FaqI GGGAC 1 cut(s) 425
FatI CATG 3 cut(s) 31, 249, 295
FauNDI CATATG 1 cut(s) 234
FbaI TGATCA 2 cut(s) 139, 178
Fnu4HI GCNGC 2 cut(s) 29, 153
FokI GGATG 2 cut(s) 521, 559
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 29, 153
FspBI CTAG 1 cut(s) 200
GluI GCNGC 2 cut(s) 29, 153
HaeIII GGCC 2 cut(s) 282, 417
HapII CCGG 1 cut(s) 470
HgaI GACGC 1 cut(s) 82
Hin1II CATG 3 cut(s) 35, 253, 299
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 4 cut(s) 45, 229, 356, 390
HpaII CCGG 1 cut(s) 470
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 3 cut(s) 121, 481, 514
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 268
Hpy8I GTNNAC 3 cut(s) 121, 481, 514
Hpy99I CGWCG 2 cut(s) 76, 502
HpyAV CCTTC 2 cut(s) 61, 367
HpyCH4III ACNGT 3 cut(s) 217, 326, 566
HpyCH4IV ACGT 2 cut(s) 20, 497
HpyCH4V TGCA 6 cut(s) 12, 31, 238, 322, 380, 467
HpySE526I ACGT 2 cut(s) 20, 497
Hsp92II CATG 3 cut(s) 35, 253, 299
Ksp22I TGATCA 2 cut(s) 139, 178
Kzo9I GATC 4 cut(s) 139, 178, 539, 555
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 7 cut(s) 93, 150, 253, 394, 460, 483, 500
Lsp1109I GCAGC 1 cut(s) 15
MaeI CTAG 1 cut(s) 200
MaeII ACGT 2 cut(s) 20, 497
MalI GATC 4 cut(s) 141, 180, 541, 557
MboI GATC 4 cut(s) 139, 178, 539, 555
MboII GAAGA 2 cut(s) 101, 111
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 3 cut(s) 194, 361, 580
MluI ACGCGT 1 cut(s) 74
MlyI GAGTC 2 cut(s) 350, 384
MnlI CCTC 8 cut(s) 95, 104, 166, 216, 432, 440, 449, 569
MseI TTAA 3 cut(s) 159, 168, 333
MslI CAYNNNNRTG 1 cut(s) 327
MspI CCGG 1 cut(s) 470
MvnI CGCG 2 cut(s) 76, 155
NdeI CATATG 1 cut(s) 234
NdeII GATC 4 cut(s) 139, 178, 539, 555
NlaIII CATG 3 cut(s) 35, 253, 299
NspI RCATGY 1 cut(s) 253
PceI AGGCCT 1 cut(s) 282
PciI ACATGT 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 434
PfeI GAWTC 2 cut(s) 45, 229
PkrI GCNGC 2 cut(s) 30, 154
PleI GAGTC 2 cut(s) 350, 384
PpsI GAGTC 2 cut(s) 350, 384
PscI ACATGT 1 cut(s) 249
RsaI GTAC 3 cut(s) 19, 122, 482
RsaNI GTAC 3 cut(s) 18, 121, 481
RseI CAYNNNNRTG 1 cut(s) 327
SaqAI TTAA 3 cut(s) 159, 168, 333
SatI GCNGC 2 cut(s) 29, 153
Sau3AI GATC 4 cut(s) 139, 178, 539, 555
SchI GAGTC 2 cut(s) 350, 384
SduI GDGCHC 1 cut(s) 63
SmiMI CAYNNNNRTG 1 cut(s) 327
Sse9I AATT 3 cut(s) 194, 361, 580
SseBI AGGCCT 1 cut(s) 282
SsiI CCGC 1 cut(s) 153
SspMI CTAG 1 cut(s) 200
StuI AGGCCT 1 cut(s) 282
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 3 cut(s) 217, 326, 566
TaiI ACGT 2 cut(s) 23, 500
TaqI TCGA 3 cut(s) 428, 437, 500
TasI AATT 3 cut(s) 194, 361, 580
TatI WGTACW 2 cut(s) 120, 480
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 2 cut(s) 45, 229
Tru1I TTAA 3 cut(s) 159, 168, 333
Tru9I TTAA 3 cut(s) 159, 168, 333
TscAI CASTG 1 cut(s) 329
TseI GCWGC 1 cut(s) 28
TspDTI ATGAA 3 cut(s) 312, 537, 558
TspRI CASTG 1 cut(s) 329
XagI CCTNNNNNAGG 1 cut(s) 170
XapI RAATTY 1 cut(s) 194
XceI RCATGY 1 cut(s) 253
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.