FvH4_5g04270

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000166
Physical Location & Seq
Reverse (-)
2541123 .. 2543004
1882 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g04270.t1

Sequence Viewer

Length: 912 bp
ATGTTAAGACTTGGAATTCATGAGTCTTCTGCAATTGAAGAGCTTCTTCAAGGCTCCTCTCTCTCAGTGAAACATAATGTATCAGACTTGCTCACTTCCCCGGACAGCTCTTTCACATGTGGTTTCTATGGTGGTGGCACAAATGGCTACTGGTTCTCCATCTGGTTCACCCACTCCAGGGACAGAACCGTAGTTTGGATGGCCAACAGAGACAGACCAGTCAATGGCTTGGGCTCCAAAGCCACACTGGCCCCAGATGGCTCCATAATCTTGACAGACGTGGATGGCACTCAAGTCTGGTCTCCCACCCTCAGCTCCAGTTCGGCCAACCTTGCTGAAAGGATCGAGCTTTTGAATTCTGGCAACCTTGTTCTGAGGGGCCCACTAGGTGAAATTCTATGGCAAAGCTTTGATTTTCCTACTGATACTCTTCTCCCTAACCAACTTTTTGCCAACGACATGAAGCTGGTATCTAAGCTAGAGAGGGGTGACTTTGGTAGTGGCTATTTTAGTTTCTATTTTGATAGTGACAATGTGTTGAGGCTCGCCGTCTATGATGGTCCTGACATTTCAAGTCTTTACTGGCCAACTCCTGGTTTTACTGCGTATCAGAATGGTAGAACAGGTTATAACAATAGCAGAATTGCTATTTTTGATGATCTGGGTAATTTTGTGTCCAGTGATAAGTTGCAGTTTAGTGCTGGTGACATGGGTTTGGGGCCGAAGAGGCGGTTGTCTAAAGATTATGATGGGAATTTGAGACTCTATAGTCTTAATTTACAAGGGGTTTGGTTGGTGACTTGGCAAGCTATCATTCAGAAGTGTCTGCTTCATGGGATGTGTGGGAAAAATGGGATTTGTATTTATACACCTGAGCCTAAATGTTCATGTCCTCCTGGCTATGACCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

304

Amino Acids

33.46

Weight (kDa)

5.21

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 63 - 154 8.6e-22 D-mannose binding lectin
S_locus_glycop PF00954 246 - 301 7.9e-07 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 630
AasI GACNNNNNNGTC 2 cut(s) 218, 768
AccB7I CCANNNNNTGG 2 cut(s) 224, 593
AciI CCGC 1 cut(s) 730
AclWI GGATC 1 cut(s) 350
AcoI YGGCCR 3 cut(s) 201, 324, 584
AcsI RAATTY 4 cut(s) 15, 355, 393, 754
AdeI CACNNNGTG 1 cut(s) 389
AfiI CCNNNNNNNGG 5 cut(s) 177, 178, 195, 224, 593
AflIII ACRYGT 1 cut(s) 116
AgsI TTSAA 4 cut(s) 38, 50, 355, 573
AjiI CACGTC 1 cut(s) 280
AjnI CCWGG 3 cut(s) 176, 592, 895
AjuI GAANNNNNNNTTGG 2 cut(s) 178, 210
AluBI AGCT 8 cut(s) 43, 108, 315, 349, 408, 466, 478, 809
AluI AGCT 8 cut(s) 43, 108, 315, 349, 408, 466, 478, 809
Alw26I GTCTC 3 cut(s) 204, 306, 754
AlwI GGATC 1 cut(s) 350
AoxI GGCC 6 cut(s) 201, 249, 324, 379, 584, 719
ApaI GGGCCC 1 cut(s) 383
ApoI RAATTY 4 cut(s) 15, 355, 393, 754
Asp700I GAANNNNTTC 1 cut(s) 42
AspS9I GGNCC 5 cut(s) 250, 379, 380, 560, 719
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 5 cut(s) 160, 401, 500, 716, 808
AvaII GGWCC 1 cut(s) 560
BaeGI GKGCMC 1 cut(s) 383
BalI TGGCCA 2 cut(s) 203, 586
BanII GRGCYC 2 cut(s) 236, 383
BbsI GAAGAC 1 cut(s) 18
BbvCI CCTCAGC 1 cut(s) 311
BccI CCATC 6 cut(s) 167, 193, 251, 278, 551, 743
BceAI ACGGC 1 cut(s) 533
BciT130I CCWGG 3 cut(s) 178, 594, 897
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 3 cut(s) 204, 306, 754
BfaI CTAG 2 cut(s) 386, 479
BfmI CTRYAG 1 cut(s) 766
BglI GCCNNNNNGGC 2 cut(s) 248, 727
Bme1390I CCNGG 4 cut(s) 101, 178, 594, 897
Bme18I GGWCC 1 cut(s) 560
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 5 cut(s) 250, 379, 380, 560, 719
BmiI GGNNCC 7 cut(s) 55, 235, 252, 262, 380, 381, 720
BmrFI CCNGG 4 cut(s) 101, 178, 594, 897
BpiI GAAGAC 1 cut(s) 18
BpmI CTGGAG 2 cut(s) 160, 301
Bpu10I CCTNAGC 2 cut(s) 311, 873
BpuEI CTTGAG 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 99, 177
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 5 cut(s) 177, 178, 195, 224, 593
Bse1I ACTGG 6 cut(s) 155, 218, 252, 318, 587, 678
BseBI CCWGG 3 cut(s) 178, 594, 897
BseDI CCNNGG 2 cut(s) 99, 177
BseGI GGATG 3 cut(s) 204, 289, 843
BseLI CCNNNNNNNGG 5 cut(s) 177, 178, 195, 224, 593
BseMII CTCAG 4 cut(s) 78, 325, 365, 864
BseNI ACTGG 6 cut(s) 155, 218, 252, 318, 587, 678
BseRI GAGGAG 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 383
BshFI GGCC 6 cut(s) 203, 251, 326, 381, 586, 721
BsiSI CCGG 1 cut(s) 101
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 5 cut(s) 177, 178, 195, 224, 593
BsmAI GTCTC 3 cut(s) 204, 306, 754
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 6 cut(s) 203, 251, 326, 381, 586, 721
Bso31I GGTCTC 1 cut(s) 306
Bsp120I GGGCCC 1 cut(s) 379
Bsp1286I GDGCHC 2 cut(s) 236, 383
Bsp143I GATC 2 cut(s) 342, 658
BspACI CCGC 1 cut(s) 730
BspANI GGCC 6 cut(s) 203, 251, 326, 381, 586, 721
BspCNI CTCAG 4 cut(s) 77, 324, 366, 865
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 7 cut(s) 55, 235, 252, 262, 380, 381, 720
BspPI GGATC 1 cut(s) 350
BspQI GCTCTTC 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 306
BsrI ACTGG 6 cut(s) 155, 218, 252, 318, 587, 678
BssECI CCNNGG 2 cut(s) 99, 177
BssMI GATC 2 cut(s) 342, 658
Bst2UI CCWGG 3 cut(s) 178, 594, 897
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 3 cut(s) 33, 435, 719
BstC8I GCNNGC 2 cut(s) 546, 807
BstDEI CTNAG 5 cut(s) 64, 311, 374, 474, 873
BstF5I GGATG 3 cut(s) 204, 289, 843
BstKTI GATC 2 cut(s) 345, 661
BstMAI GTCTC 3 cut(s) 204, 306, 754
BstMBI GATC 2 cut(s) 342, 658
BstMWI GCNNNNNNNGC 4 cut(s) 144, 248, 332, 727
BstNI CCWGG 3 cut(s) 178, 594, 897
BstNSI RCATGY 1 cut(s) 120
BstSCI CCNGG 4 cut(s) 99, 176, 592, 895
BstSFI CTRYAG 1 cut(s) 766
BstSLI GKGCMC 1 cut(s) 383
BstV2I GAAGAC 1 cut(s) 18
BsuRI GGCC 6 cut(s) 203, 251, 326, 381, 586, 721
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 3 cut(s) 204, 289, 843
BtsIMutI CAGTG 3 cut(s) 72, 245, 685
Cac8I GCNNGC 2 cut(s) 546, 807
CciI TCATGA 1 cut(s) 19
Cfr13I GGNCC 5 cut(s) 250, 379, 380, 560, 719
CviAII CATG 6 cut(s) 20, 117, 460, 709, 833, 888
DdeI CTNAG 5 cut(s) 64, 311, 374, 474, 873
DpnI GATC 2 cut(s) 344, 660
DpnII GATC 2 cut(s) 342, 658
DraIII CACNNNGTG 1 cut(s) 389
DrdI GACNNNNNNGTC 2 cut(s) 218, 768
DseDI GACNNNNNNGTC 2 cut(s) 218, 768
EaeI YGGCCR 3 cut(s) 201, 324, 584
Eam1104I CTCTTC 3 cut(s) 33, 435, 719
EarI CTCTTC 3 cut(s) 33, 435, 719
Eco24I GRGCYC 2 cut(s) 236, 383
Eco31I GGTCTC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 560
EcoO109I RGGNCCY 1 cut(s) 379
EcoRI GAATTC 2 cut(s) 15, 355
EcoRII CCWGG 3 cut(s) 176, 592, 895
EcoT38I GRGCYC 2 cut(s) 236, 383
FaeI CATG 6 cut(s) 23, 120, 463, 712, 836, 891
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FaqI GGGAC 1 cut(s) 194
FatI CATG 6 cut(s) 19, 116, 459, 708, 832, 887
FokI GGATG 3 cut(s) 211, 296, 850
FriOI GRGCYC 2 cut(s) 236, 383
FspBI CTAG 2 cut(s) 386, 479
GsuI CTGGAG 2 cut(s) 160, 301
HaeIII GGCC 6 cut(s) 203, 251, 326, 381, 586, 721
HapII CCGG 1 cut(s) 101
Hin1II CATG 6 cut(s) 23, 120, 463, 712, 836, 891
HindIII AAGCTT 1 cut(s) 406
HinfI GANTC 2 cut(s) 23, 762
HpaII CCGG 1 cut(s) 101
HphI GGTGA 5 cut(s) 160, 401, 500, 716, 808
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 4 cut(s) 85, 375, 612, 819
Hpy188III TCNNGA 3 cut(s) 20, 271, 563
Hpy8I GTNNAC 1 cut(s) 168
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 32, 691
HpyF10VI GCNNNNNNNGC 4 cut(s) 144, 248, 332, 727
HpyF3I CTNAG 5 cut(s) 64, 311, 374, 474, 873
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 6 cut(s) 23, 120, 463, 712, 836, 891
Kzo9I GATC 2 cut(s) 342, 658
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 4 cut(s) 59, 239, 266, 320
MaeI CTAG 2 cut(s) 386, 479
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 4 cut(s) 488, 527, 704, 796
MalI GATC 2 cut(s) 344, 660
MboI GATC 2 cut(s) 342, 658
MboII GAAGA 5 cut(s) 18, 38, 50, 422, 736
MfeI CAATTG 1 cut(s) 33
MhlI GDGCHC 2 cut(s) 236, 383
MlsI TGGCCA 2 cut(s) 203, 586
MluCI AATT 8 cut(s) 15, 33, 355, 393, 642, 667, 754, 775
MluNI TGGCCA 2 cut(s) 203, 586
MlyI GAGTC 2 cut(s) 32, 756
MnlI CCTC 7 cut(s) 67, 320, 369, 477, 534, 720, 903
Mox20I TGGCCA 2 cut(s) 203, 586
MroXI GAANNNNTTC 1 cut(s) 42
MscI TGGCCA 2 cut(s) 203, 586
MseI TTAA 2 cut(s) 5, 774
Msp20I TGGCCA 2 cut(s) 203, 586
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 4 cut(s) 101, 178, 594, 897
MunI CAATTG 1 cut(s) 33
MvaI CCWGG 3 cut(s) 178, 594, 897
MwoI GCNNNNNNNGC 4 cut(s) 144, 248, 332, 727
NciI CCSGG 1 cut(s) 101
NdeII GATC 2 cut(s) 342, 658
NlaIII CATG 6 cut(s) 23, 120, 463, 712, 836, 891
NlaIV GGNNCC 7 cut(s) 55, 235, 252, 262, 380, 381, 720
NmuCI GTSAC 4 cut(s) 488, 527, 704, 796
NspI RCATGY 1 cut(s) 120
PagI TCATGA 1 cut(s) 19
PciI ACATGT 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 42
PflMI CCANNNNNTGG 2 cut(s) 224, 593
PleI GAGTC 2 cut(s) 31, 756
PpsI GAGTC 2 cut(s) 31, 756
PscI ACATGT 1 cut(s) 116
PsiI TTATAA 1 cut(s) 630
Psp6I CCWGG 3 cut(s) 176, 592, 895
PspGI CCWGG 3 cut(s) 176, 592, 895
PspN4I GGNNCC 7 cut(s) 55, 235, 252, 262, 380, 381, 720
PspOMI GGGCCC 1 cut(s) 379
PspPI GGNCC 5 cut(s) 250, 379, 380, 560, 719
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 2 cut(s) 5, 774
Sau3AI GATC 2 cut(s) 342, 658
Sau96I GGNCC 5 cut(s) 250, 379, 380, 560, 719
SchI GAGTC 2 cut(s) 32, 756
ScrFI CCNGG 4 cut(s) 101, 178, 594, 897
SduI GDGCHC 2 cut(s) 236, 383
SfcI CTRYAG 1 cut(s) 766
SinI GGWCC 1 cut(s) 560
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 8 cut(s) 15, 33, 355, 393, 642, 667, 754, 775
SsiI CCGC 1 cut(s) 730
SspMI CTAG 2 cut(s) 386, 479
StyD4I CCNGG 4 cut(s) 99, 176, 592, 895
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 345
TasI AATT 8 cut(s) 15, 33, 355, 393, 642, 667, 754, 775
Tru1I TTAA 2 cut(s) 5, 774
Tru9I TTAA 2 cut(s) 5, 774
TscAI CASTG 3 cut(s) 72, 252, 685
TseFI GTSAC 4 cut(s) 488, 527, 704, 796
Tsp45I GTSAC 4 cut(s) 488, 527, 704, 796
TspDTI ATGAA 4 cut(s) 8, 476, 821, 876
TspRI CASTG 3 cut(s) 72, 252, 685
Van91I CCANNNNNTGG 2 cut(s) 224, 593
VpaK11BI GGWCC 1 cut(s) 560
XapI RAATTY 4 cut(s) 15, 355, 393, 754
XceI RCATGY 1 cut(s) 120
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 2 cut(s) 386, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.