Rmu_co8418605.1_g000001

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8418605.1
OG0000166
Physical Location & Seq
Forward (+)
155 .. 1324
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8418605.1_g000001.1.cds

Sequence Viewer

Length: 1170 bp
atgcctgtgagtgtggaagcaccattactagtcaccaggctcaatgccctggattcatgtaagagtactgaggcccaaaaaatgggttctgcttcaatgtatgacaatactagtaaaagggtaagatgggcatatctgtattggtttgctactgcagctggtgcagttgaaattctcttcatactttcaggttggtggttacttttcagaagacatggcgctagagctcctatcgaagatggatatcatgtgatttcgagtcaatttagaatgtttcggtacgctgagctcaagaaggcgaccaaaacattcaaggaagagctgggaagaggggcttctggggctgtgtttaagggtgttctggaagatgagagagtggttgctgtgaagaaattggcagacatttatcaaggtgaagatgtgttttgggcggaagtaagcataattggtaaaatcaatcacatgaacctagtgagaatatggggattctgttcagaagataaacacagactcctggtgtctgagtttattgaaaatggatcactagacaagcacttgttccccccaaattttcttggatggcaagaaaggtttaaagttgcaataggggttgcaaagggtttagcctatcttcaccatgagtgtctagaatgggttatacattgtgatgtgaagcctgaaaatatactcttagacagtaactttgaggcaaagattgcagatttcgggctagcaaagttgactcagagaggcagcaagagctctatgttctctaaagttcgaggaacaaaagggtatatggccccggagtgggctctaaaccttccaatcactgcgaaagtggatgtttacagttacggagtggtgattctagagttggtgaagggcattcgactttcgaattgggcattggaggatagcgaggagcaagaggcagagctgactaggtgtgtgaggatagtgaaaaggaagattcaatgtggagaagattcatggatggaggatatgttggatccaagactaaaagggcagttcagcaggaaacaagcagaaaagatggttgagattggtatttcttgtgtggaagaagataggagcagaagaccgacaatggattcagtattacaagatttgctagaatgtgaagatgagtcctatgtgcatctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

389

Amino Acids

44.39

Weight (kDa)

6.35

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 82
AciI CCGC 1 cut(s) 431
AclWI GGATC 3 cut(s) 547, 1007, 1020
AcsI RAATTY 2 cut(s) 171, 568
AfaI GTAC 2 cut(s) 67, 281
AfiI CCNNNNNNNGG 3 cut(s) 82, 810, 811
AgsI TTSAA 5 cut(s) 96, 170, 313, 533, 977
AhlI ACTAGT 2 cut(s) 28, 110
AjnI CCWGG 3 cut(s) 35, 48, 513
AjuI GAANNNNNNNTTGG 2 cut(s) 893, 925
AluBI AGCT 6 cut(s) 158, 227, 289, 322, 762, 940
AluI AGCT 6 cut(s) 158, 227, 289, 322, 762, 940
Alw21I GWGCWC 3 cut(s) 229, 291, 764
AlwI GGATC 3 cut(s) 547, 1007, 1020
AoxI GGCC 2 cut(s) 72, 801
ApeKI GCWGC 2 cut(s) 155, 753
ApoI RAATTY 2 cut(s) 171, 568
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 2 cut(s) 73, 802
AsuC2I CCSGG 1 cut(s) 806
AsuHPI GGTGA 5 cut(s) 25, 425, 626, 877, 892
AsuII TTCGAA 1 cut(s) 899
AsuNHI GCTAGC 1 cut(s) 730
BamHI GGATCC 1 cut(s) 1012
BanII GRGCYC 4 cut(s) 229, 291, 764, 817
BarI GAAGNNNNNNTAC 2 cut(s) 9, 41
BbsI GAAGAC 2 cut(s) 217, 1108
Bbv12I GWGCWC 3 cut(s) 229, 291, 764
BbvI GCAGC 2 cut(s) 167, 765
BccI CCATC 5 cut(s) 120, 233, 573, 991, 1051
BciT130I CCWGG 3 cut(s) 37, 50, 515
BcnI CCSGG 1 cut(s) 806
BcuI ACTAGT 2 cut(s) 28, 110
BfmI CTRYAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 222
BisI GCNGC 2 cut(s) 156, 754
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 2 cut(s) 157, 755
BmcAI AGTACT 1 cut(s) 67
Bme1390I CCNGG 4 cut(s) 37, 50, 515, 806
BmgT120I GGNCC 2 cut(s) 73, 802
BmiI GGNNCC 2 cut(s) 804, 1014
BmrFI CCNGG 4 cut(s) 37, 50, 515, 806
BmtI GCTAGC 1 cut(s) 734
BpiI GAAGAC 2 cut(s) 217, 1108
Bpu1102I GCTNAGC 1 cut(s) 285
Bpu14I TTCGAA 1 cut(s) 899
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 806
BsaBI GATNNNNATC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 48, 804
BsaXI ACNNNNNCTCC 4 cut(s) 495, 525, 992, 1022
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 810, 811
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 3 cut(s) 37, 50, 515
BseDI CCNNGG 2 cut(s) 48, 804
BseGI GGATG 3 cut(s) 584, 850, 1002
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 3 cut(s) 82, 810, 811
BseMII CTCAG 4 cut(s) 60, 276, 513, 758
BseRI GAGGAG 1 cut(s) 938
BseXI GCAGC 2 cut(s) 167, 765
BseYI CCCAGC 1 cut(s) 322
BsgI GTGCAG 1 cut(s) 183
BshFI GGCC 2 cut(s) 74, 803
BsiHKAI GWGCWC 3 cut(s) 229, 291, 764
BsiSI CCGG 1 cut(s) 806
BslI CCNNNNNNNGG 3 cut(s) 82, 810, 811
BsmI GAATGC 1 cut(s) 888
BsnI GGCC 2 cut(s) 74, 803
Bsp119I TTCGAA 1 cut(s) 899
Bsp1286I GDGCHC 4 cut(s) 229, 291, 764, 817
Bsp143I GATC 2 cut(s) 539, 1012
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 1 cut(s) 431
BspANI GGCC 2 cut(s) 74, 803
BspCNI CTCAG 4 cut(s) 61, 277, 514, 757
BspLI GGNNCC 2 cut(s) 804, 1014
BspMAI CTGCAG 1 cut(s) 157
BspOI GCTAGC 1 cut(s) 734
BspPI GGATC 3 cut(s) 547, 1007, 1020
BspQI GCTCTTC 1 cut(s) 312
BspT104I TTCGAA 1 cut(s) 899
BssECI CCNNGG 2 cut(s) 48, 804
BssMI GATC 2 cut(s) 539, 1012
Bst2UI CCWGG 3 cut(s) 37, 50, 515
Bst4CI ACNGT 2 cut(s) 698, 854
Bst6I CTCTTC 3 cut(s) 182, 312, 322
BstAPI GCANNNNNTGC 2 cut(s) 161, 716
BstBI TTCGAA 1 cut(s) 899
BstC8I GCNNGC 1 cut(s) 732
BstDEI CTNAG 5 cut(s) 69, 285, 522, 691, 744
BstF5I GGATG 3 cut(s) 584, 850, 1002
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 2 cut(s) 542, 1015
BstMBI GATC 2 cut(s) 539, 1012
BstMWI GCNNNNNNNGC 5 cut(s) 155, 161, 341, 716, 759
BstNI CCWGG 3 cut(s) 37, 50, 515
BstSCI CCNGG 4 cut(s) 35, 48, 513, 804
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 167, 765
BstV2I GAAGAC 2 cut(s) 217, 1108
BstX2I RGATCY 1 cut(s) 1012
BstYI RGATCY 1 cut(s) 1012
BsuRI GGCC 2 cut(s) 74, 803
BtsCI GGATG 3 cut(s) 584, 850, 1002
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 1 cut(s) 831
Cac8I GCNNGC 1 cut(s) 732
CfoI GCGC 1 cut(s) 221
Cfr13I GGNCC 2 cut(s) 73, 802
Csp6I GTAC 2 cut(s) 66, 280
CviAII CATG 6 cut(s) 57, 215, 248, 463, 638, 993
CviQI GTAC 2 cut(s) 66, 280
DdeI CTNAG 5 cut(s) 69, 285, 522, 691, 744
DpnI GATC 2 cut(s) 541, 1014
DpnII GATC 2 cut(s) 539, 1012
DraI TTTAAA 1 cut(s) 595
Eam1104I CTCTTC 3 cut(s) 182, 312, 322
EarI CTCTTC 3 cut(s) 182, 312, 322
EciI GGCGGA 1 cut(s) 446
Ecl136II GAGCTC 3 cut(s) 227, 289, 762
Eco24I GRGCYC 4 cut(s) 229, 291, 764, 817
Eco32I GATATC 1 cut(s) 245
Eco53kI GAGCTC 3 cut(s) 227, 289, 762
EcoICRI GAGCTC 3 cut(s) 227, 289, 762
EcoRII CCWGG 3 cut(s) 35, 48, 513
EcoRV GATATC 1 cut(s) 245
EcoT38I GRGCYC 4 cut(s) 229, 291, 764, 817
FaeI CATG 6 cut(s) 60, 218, 251, 466, 641, 996
FalI AAGNNNNNCTT 2 cut(s) 319, 351
FatI CATG 6 cut(s) 56, 214, 247, 462, 637, 992
Fnu4HI GCNGC 2 cut(s) 156, 754
FokI GGATG 3 cut(s) 591, 857, 1009
FriOI GRGCYC 4 cut(s) 229, 291, 764, 817
Fsp4HI GCNGC 2 cut(s) 156, 754
GlaI GCGC 1 cut(s) 220
GluI GCNGC 2 cut(s) 156, 754
GsaI CCCAGC 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 2 cut(s) 74, 803
HapII CCGG 1 cut(s) 806
HhaI GCGC 1 cut(s) 221
Hin1II CATG 6 cut(s) 60, 218, 251, 466, 641, 996
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HincII GTYRAC 1 cut(s) 741
HindII GTYRAC 1 cut(s) 741
HpaII CCGG 1 cut(s) 806
HphI GGTGA 5 cut(s) 25, 425, 626, 877, 892
Hpy166II GTNNAC 2 cut(s) 741, 850
Hpy188I TCNGA 4 cut(s) 209, 496, 523, 747
Hpy188III TCNNGA 4 cut(s) 292, 362, 647, 872
Hpy8I GTNNAC 2 cut(s) 741, 850
HpyAV CCTTC 3 cut(s) 289, 833, 877
HpyCH4III ACNGT 2 cut(s) 698, 854
HpyCH4V TGCA 6 cut(s) 155, 164, 602, 614, 719, 1162
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 161, 341, 716, 759
HpyF3I CTNAG 5 cut(s) 69, 285, 522, 691, 744
Hsp92II CATG 6 cut(s) 60, 218, 251, 466, 641, 996
HspAI GCGC 1 cut(s) 219
Kzo9I GATC 2 cut(s) 539, 1012
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 3 cut(s) 232, 925, 1095
Lsp1109I GCAGC 2 cut(s) 167, 765
MaeIII GTNAC 4 cut(s) 31, 198, 698, 854
MalI GATC 2 cut(s) 541, 1014
MboI GATC 2 cut(s) 539, 1012
MflI RGATCY 1 cut(s) 1012
MhlI GDGCHC 4 cut(s) 229, 291, 764, 817
MluCI AATT 6 cut(s) 171, 263, 392, 444, 568, 901
MlyI GAGTC 4 cut(s) 268, 504, 736, 1160
MmeI TCCRAC 1 cut(s) 990
MseI TTAA 2 cut(s) 351, 594
MslI CAYNNNNRTG 1 cut(s) 666
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 806
MspR9I CCNGG 4 cut(s) 37, 50, 515, 806
Mva1269I GAATGC 1 cut(s) 888
MvaI CCWGG 3 cut(s) 37, 50, 515
MwoI GCNNNNNNNGC 5 cut(s) 155, 161, 341, 716, 759
NciI CCSGG 1 cut(s) 806
NdeII GATC 2 cut(s) 539, 1012
NheI GCTAGC 1 cut(s) 730
NlaIII CATG 6 cut(s) 60, 218, 251, 466, 641, 996
NlaIV GGNNCC 2 cut(s) 804, 1014
NmuCI GTSAC 1 cut(s) 31
NspV TTCGAA 1 cut(s) 899
PciSI GCTCTTC 1 cut(s) 312
PctI GAATGC 1 cut(s) 888
PfeI GAWTC 6 cut(s) 53, 486, 868, 973, 989, 1115
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 2 cut(s) 157, 755
PleI GAGTC 4 cut(s) 267, 504, 736, 1159
PpsI GAGTC 4 cut(s) 267, 504, 736, 1159
Psp124BI GAGCTC 3 cut(s) 229, 291, 764
Psp6I CCWGG 3 cut(s) 35, 48, 513
PspFI CCCAGC 1 cut(s) 322
PspGI CCWGG 3 cut(s) 35, 48, 513
PspN4I GGNNCC 2 cut(s) 804, 1014
PspPI GGNCC 2 cut(s) 73, 802
PstI CTGCAG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 1012
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 2 cut(s) 67, 281
RsaNI GTAC 2 cut(s) 66, 280
RseI CAYNNNNRTG 1 cut(s) 666
SacI GAGCTC 3 cut(s) 229, 291, 764
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 2 cut(s) 351, 594
SatI GCNGC 2 cut(s) 156, 754
Sau3AI GATC 2 cut(s) 539, 1012
Sau96I GGNCC 2 cut(s) 73, 802
ScaI AGTACT 1 cut(s) 67
SchI GAGTC 4 cut(s) 268, 504, 736, 1160
ScrFI CCNGG 4 cut(s) 37, 50, 515, 806
SduI GDGCHC 4 cut(s) 229, 291, 764, 817
SfcI CTRYAG 1 cut(s) 153
SfuI TTCGAA 1 cut(s) 899
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SpeI ACTAGT 2 cut(s) 28, 110
Sse9I AATT 6 cut(s) 171, 263, 392, 444, 568, 901
SsiI CCGC 1 cut(s) 431
SstI GAGCTC 3 cut(s) 229, 291, 764
StyD4I CCNGG 4 cut(s) 35, 48, 513, 804
TaaI ACNGT 2 cut(s) 698, 854
TaqI TCGA 5 cut(s) 234, 257, 781, 892, 899
TaqII GACCGA 1 cut(s) 1120
TasI AATT 6 cut(s) 171, 263, 392, 444, 568, 901
TatI WGTACW 1 cut(s) 65
TfiI GAWTC 6 cut(s) 53, 486, 868, 973, 989, 1115
Tru1I TTAA 2 cut(s) 351, 594
Tru9I TTAA 2 cut(s) 351, 594
TscAI CASTG 1 cut(s) 838
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 2 cut(s) 155, 753
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 4 cut(s) 45, 169, 479, 981
TspGWI ACGGA 1 cut(s) 873
TspRI CASTG 1 cut(s) 838
Van91I CCANNNNNTGG 1 cut(s) 82
XapI RAATTY 2 cut(s) 171, 568
XbaI TCTAGA 2 cut(s) 646, 871
ZrmI AGTACT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.