Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002672

Physical Location & Seq

Genomic Coordinates Forward (+)

17063118 .. 17064808

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g14540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTGTAATTCCAAGTTAGAGGATTGTCTGCCTTTCCATTTAGATGATGATTCCAGTGGCCCTGAGGGGAGCCCATCCTTTTCAAGGAGGAGGTCCTCGATGAAGTACACTTATGGATTTTCTCTCGATACAAAAGGTGATAGACGGGAAGCATCACCTACCACTTCGTACAGATATGGCAGTGCAACACGTAAAGAAAATTCTAGTCTTAGGTTGGACGGCCATAGACCATTAGATAGAAATCTAACTGACCCTCTAAGATTTGTGCACCAAAAACCAGTGAATGCTCGATCAAGAGTTATGGATTCGCTGGAGTTGATTGATCAAGATTATGTTCTTGTGTCTGGACCTTCAGTTGATGTGTCTTCTTCCTCAGCTAGTGCTTCCAAACCAAGCCCTTCTTTATACAAATCACAGAGTCTCCCTCGAGAATCTTTAGCCACCTCATCAAGTGCCCCAATGCCAATCAAGGGTGCAGCTGCTAATAGTAACGTGTGTTGCATAGGAAGCTTGGATAGTCAGAGTTCTGCTCCAGGGACGTCACTAGGATCAATGGATATGGGAGATCAATGTGTGTCTGCTATTACTGAATTAGTTCATGAAAAGGTTGATGAGCTAATGGGTAACATGGAAAGTGCGGCAGTGTTCTATACAAAAGCTGTGCGCCTCTTGGTCTTTCTTCTAGTCGAAGCACCATCGCTCATTCTCAACCCGCCATTCTCCCTGACAAACTCTGACCGGTATAGGCTTCGAAATTACATTGGTATACTTAATAACAGGCAAGGTTACTCAAGGTCTCAGCGGATGGCGATTTTGAAGGGTGAGGAACAACAATGCCCGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009405 GO:0009847 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044409 GO:0044419 GO:0048102 GO:0051701 GO:0051704 GO:0051828 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04139 ko04140 ko04150 ko04212 map04136 map04138 map04139 map04140 map04150 map04212

Pfam Domains

Protein Families

Pkinase

Protein Analysis

282

Amino Acids

30.75

Weight (kDa)

7.6

Isoelectric Point (pI)

56.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37840 AT2G37840 AT2G37840 AT3G53930 AT3G53930 AT3G53930 AT3G53930 AT3G53930
fragaria_vesca	FvH4_6g12940 FvH4_6g12940 FvH4_6g12940 FvH4_6g12940 FvH4_6g12940
malus_domestica	MD04G1136900.v1.1 MD08G1035900.v1.1 MD12G1151100.v1.1
prunus_persica	Prupe.6G262900_v2.0.a1 Prupe.6G262900_v2.0.a1 Prupe.6G262900_v2.0.a1
pyrus_communis	pycom04g12420 pycom12g14500 pycom12g14540
rosa_chinensis	RchiOBHm_Chr3g0465041 RchiOBHm_Chr6g0290621
rosa_laevigata	RLG00000024660
rosa_multiflora	Rmu_sc0002119.1_g000016 Rmu_sc0003072.1_g000002 Rmu_sc0004362.1_g000019 Rmu_sc0006588.1_g000005
rosa_roxburghii	Rroxscaffold_6G00415320
rosa_rugosa	Rorug03G0074800 Rorug03G0074800
rosa_samantha	Rh3BG138400 Rh3CG140800 Rh3CG149100 Rh3DG139900 Rh4CG187800 Rh5CG080500
rosa_wichuraiana	Rw3G011320 Rw5G006690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	542
AccI	GTMKAC	1 cut(s)	766
AciI	CCGC	4 cut(s)	638, 713, 802, 839
AclWI	GGATC	1 cut(s)	556
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	539
AfaI	GTAC	2 cut(s)	107, 170
AfiI	CCNNNNNNNGG	2 cut(s)	84, 470
AflIII	ACRYGT	2 cut(s)	188, 492
AgeI	ACCGGT	1 cut(s)	738
AgsI	TTSAA	2 cut(s)	84, 817
AjnI	CCWGG	1 cut(s)	532
AluBI	AGCT	5 cut(s)	377, 479, 510, 616, 659
AluI	AGCT	5 cut(s)	377, 479, 510, 616, 659
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	2 cut(s)	425, 801
Alw44I	GTGCAC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	556
Ama87I	CYCGRG	1 cut(s)	426
AoxI	GGCC	2 cut(s)	58, 220
ApaLI	GTGCAC	1 cut(s)	266
ApeKI	GCWGC	2 cut(s)	476, 479
ApoI	RAATTY	1 cut(s)	199
AsiGI	ACCGGT	1 cut(s)	738
Asp700I	GAANNNNTTC	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	666
AspS9I	GGNCC	3 cut(s)	59, 93, 347
AsuHPI	GGTGA	3 cut(s)	147, 149, 833
AsuII	TTCGAA	1 cut(s)	751
AvaI	CYCGRG	1 cut(s)	426
AvaII	GGWCC	2 cut(s)	93, 347
AxyI	CCTNAGG	1 cut(s)	63
BaeGI	GKGCMC	2 cut(s)	270, 457
BanII	GRGCYC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	270
BbvCI	CCTCAGC	1 cut(s)	373
BbvI	GCAGC	2 cut(s)	466, 488
BccI	CCATC	3 cut(s)	82, 703, 799
BceAI	ACGGC	1 cut(s)	235
BciT130I	CCWGG	1 cut(s)	534
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	2 cut(s)	425, 801
BfaI	CTAG	4 cut(s)	204, 378, 545, 683
BisI	GCNGC	3 cut(s)	477, 480, 639
BlsI	GCNGC	3 cut(s)	478, 481, 640
Bme1390I	CCNGG	1 cut(s)	534
Bme18I	GGWCC	2 cut(s)	93, 347
BmeT110I	CYCGRG	1 cut(s)	426
BmgT120I	GGNCC	3 cut(s)	59, 93, 347
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	534
BmsI	GCATC	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	357
BplI	GAGNNNNNCTC	4 cut(s)	409, 441, 514, 546
BpmI	CTGGAG	2 cut(s)	332, 516
Bpu10I	CCTNAGC	1 cut(s)	373
Bpu14I	TTCGAA	1 cut(s)	751
BpuEI	CTTGAG	1 cut(s)	775
BsaAI	YACGTR	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	539
BsaI	GGTCTC	1 cut(s)	801
BsaJI	CCNNGG	1 cut(s)	533
BsaWI	WCCGGW	1 cut(s)	738
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 470
Bse118I	RCCGGY	1 cut(s)	738
Bse1I	ACTGG	2 cut(s)	54, 278
Bse21I	CCTNAGG	1 cut(s)	63
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	1 cut(s)	533
BseGI	GGATG	2 cut(s)	74, 810
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	84, 470
BseMII	CTCAG	3 cut(s)	54, 387, 812
BseNI	ACTGG	2 cut(s)	54, 278
BseRI	GAGGAG	1 cut(s)	103
BseSI	GKGCMC	2 cut(s)	270, 457
BseXI	GCAGC	2 cut(s)	466, 488
BsgI	GTGCAG	1 cut(s)	495
BshFI	GGCC	2 cut(s)	60, 222
BshTI	ACCGGT	1 cut(s)	738
BsiHKAI	GWGCWC	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	739
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	2 cut(s)	84, 470
BsmAI	GTCTC	2 cut(s)	425, 801
BsmFI	GGGAC	1 cut(s)	550
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	60, 222
Bso31I	GGTCTC	1 cut(s)	801
BsoBI	CYCGRG	1 cut(s)	426
Bsp119I	TTCGAA	1 cut(s)	751
Bsp1286I	GDGCHC	3 cut(s)	74, 270, 457
Bsp143I	GATC	4 cut(s)	290, 322, 548, 565
BspACI	CCGC	4 cut(s)	638, 713, 802, 839
BspANI	GGCC	2 cut(s)	60, 222
BspCNI	CTCAG	3 cut(s)	55, 386, 811
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	556
BspT104I	TTCGAA	1 cut(s)	751
BspTNI	GGTCTC	1 cut(s)	801
BsrFI	RCCGGY	1 cut(s)	738
BsrI	ACTGG	2 cut(s)	54, 278
BssAI	RCCGGY	1 cut(s)	738
BssECI	CCNNGG	1 cut(s)	533
BssMI	GATC	4 cut(s)	290, 322, 548, 565
BssNAI	GTATAC	1 cut(s)	767
BssNI	GRCGYC	1 cut(s)	539
Bst1107I	GTATAC	1 cut(s)	767
Bst2UI	CCWGG	1 cut(s)	534
BstACI	GRCGYC	1 cut(s)	539
BstBAI	YACGTR	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	751
BstC8I	GCNNGC	1 cut(s)	839
BstDEI	CTNAG	6 cut(s)	63, 209, 257, 373, 798, 843
BstENI	CCTNNNNNAGG	1 cut(s)	82
BstF5I	GGATG	2 cut(s)	74, 810
BstHHI	GCGC	1 cut(s)	666
BstKTI	GATC	4 cut(s)	293, 325, 551, 568
BstMAI	GTCTC	2 cut(s)	425, 801
BstMBI	GATC	4 cut(s)	290, 322, 548, 565
BstMWI	GCNNNNNNNGC	1 cut(s)	507
BstNI	CCWGG	1 cut(s)	534
BstSCI	CCNGG	1 cut(s)	532
BstSLI	GKGCMC	2 cut(s)	270, 457
BstV1I	GCAGC	2 cut(s)	466, 488
BstV2I	GAAGAC	1 cut(s)	357
BstZ17I	GTATAC	1 cut(s)	767
Bsu36I	CCTNAGG	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	60, 222
BtgZI	GCGATG	1 cut(s)	681
BtsCI	GGATG	2 cut(s)	74, 810
BtsI	GCAGTG	2 cut(s)	187, 648
BtsIMutI	CAGTG	4 cut(s)	61, 187, 285, 648
Cac8I	GCNNGC	1 cut(s)	839
CciI	TCATGA	1 cut(s)	598
CfoI	GCGC	1 cut(s)	666
Cfr10I	RCCGGY	1 cut(s)	738
Cfr13I	GGNCC	3 cut(s)	59, 93, 347
Csp6I	GTAC	2 cut(s)	106, 169
CspAI	ACCGGT	1 cut(s)	738
CviAII	CATG	2 cut(s)	599, 628
CviQI	GTAC	2 cut(s)	106, 169
DdeI	CTNAG	6 cut(s)	63, 209, 257, 373, 798, 843
DpnI	GATC	4 cut(s)	292, 324, 550, 567
DpnII	GATC	4 cut(s)	290, 322, 548, 565
EaeI	YGGCCR	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	801
Eco47I	GGWCC	2 cut(s)	93, 347
Eco57I	CTGAAG	1 cut(s)	336
Eco81I	CCTNAGG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	426
EcoNI	CCTNNNNNAGG	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	2 cut(s)	602, 631
FalI	AAGNNNNNCTT	2 cut(s)	385, 417
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	2 cut(s)	598, 627
FauI	CCCGC	1 cut(s)	720
FbaI	TGATCA	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	766
Fnu4HI	GCNGC	3 cut(s)	477, 480, 639
FokI	GGATG	2 cut(s)	61, 817
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	3 cut(s)	477, 480, 639
FspBI	CTAG	4 cut(s)	204, 378, 545, 683
GlaI	GCGC	1 cut(s)	665
GluI	GCNGC	3 cut(s)	477, 480, 639
GsuI	CTGGAG	2 cut(s)	332, 516
HaeIII	GGCC	2 cut(s)	60, 222
HapII	CCGG	1 cut(s)	739
HhaI	GCGC	1 cut(s)	666
Hin1I	GRCGYC	1 cut(s)	539
Hin1II	CATG	2 cut(s)	602, 631
Hin6I	GCGC	1 cut(s)	664
HinP1I	GCGC	1 cut(s)	664
HindIII	AAGCTT	1 cut(s)	508
HinfI	GANTC	4 cut(s)	50, 305, 418, 431
HpaII	CCGG	1 cut(s)	739
HphI	GGTGA	3 cut(s)	147, 149, 833
Hpy166II	GTNNAC	3 cut(s)	108, 268, 767
Hpy188I	TCNGA	2 cut(s)	522, 736
Hpy188III	TCNNGA	6 cut(s)	125, 294, 326, 345, 428, 599
Hpy8I	GTNNAC	3 cut(s)	108, 268, 767
HpyAV	CCTTC	3 cut(s)	360, 408, 811
HpyCH4IV	ACGT	3 cut(s)	190, 492, 539
HpyCH4V	TGCA	4 cut(s)	185, 268, 476, 501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	507
HpyF3I	CTNAG	6 cut(s)	63, 209, 257, 373, 798, 843
HpySE526I	ACGT	3 cut(s)	190, 492, 539
Hsp92I	GRCGYC	1 cut(s)	539
Hsp92II	CATG	2 cut(s)	602, 631
HspAI	GCGC	1 cut(s)	664
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	290, 322, 548, 565
LmnI	GCTCC	2 cut(s)	69, 535
Lsp1109I	GCAGC	2 cut(s)	466, 488
LweI	GCATC	1 cut(s)	161
MaeI	CTAG	4 cut(s)	204, 378, 545, 683
MaeII	ACGT	3 cut(s)	190, 492, 539
MaeIII	GTNAC	4 cut(s)	488, 540, 623, 785
MalI	GATC	4 cut(s)	292, 324, 550, 567
MboI	GATC	4 cut(s)	290, 322, 548, 565
MboII	GAAGA	3 cut(s)	357, 360, 671
MhlI	GDGCHC	3 cut(s)	74, 270, 457
MluCI	AATT	4 cut(s)	7, 199, 590, 754
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	1 cut(s)	771
MslI	CAYNNNNRTG	1 cut(s)	42
MspA1I	CMGCKG	2 cut(s)	479, 802
MspI	CCGG	1 cut(s)	739
MspR9I	CCNGG	1 cut(s)	534
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	1 cut(s)	507
NdeII	GATC	4 cut(s)	290, 322, 548, 565
NlaIII	CATG	2 cut(s)	602, 631
NlaIV	GGNNCC	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	540
NspV	TTCGAA	1 cut(s)	751
PaeR7I	CTCGAG	1 cut(s)	426
PagI	TCATGA	1 cut(s)	598
PctI	GAATGC	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	3 cut(s)	50, 305, 431
PinAI	ACCGGT	1 cut(s)	738
PkrI	GCNGC	3 cut(s)	478, 481, 640
PleI	GAGTC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	426
Ppu21I	YACGTR	1 cut(s)	191
PpuMI	RGGWCCY	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	532
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	3 cut(s)	59, 93, 347
PspPPI	RGGWCCY	1 cut(s)	93
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	2 cut(s)	107, 170
RsaNI	GTAC	2 cut(s)	106, 169
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	771
SatI	GCNGC	3 cut(s)	477, 480, 639
Sau3AI	GATC	4 cut(s)	290, 322, 548, 565
Sau96I	GGNCC	3 cut(s)	59, 93, 347
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	534
SduI	GDGCHC	3 cut(s)	74, 270, 457
SfaNI	GCATC	1 cut(s)	161
Sfr274I	CTCGAG	1 cut(s)	426
SfuI	TTCGAA	1 cut(s)	751
SinI	GGWCC	2 cut(s)	93, 347
SlaI	CTCGAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	2 cut(s)	426, 790
SmoI	CTYRAG	2 cut(s)	426, 790
Sse9I	AATT	4 cut(s)	7, 199, 590, 754
SsiI	CCGC	4 cut(s)	638, 713, 802, 839
SspMI	CTAG	4 cut(s)	204, 378, 545, 683
StyD4I	CCNGG	1 cut(s)	532
TaiI	ACGT	3 cut(s)	193, 495, 542
TaqI	TCGA	6 cut(s)	98, 126, 289, 427, 687, 751
TasI	AATT	4 cut(s)	7, 199, 590, 754
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	1 cut(s)	641
TfiI	GAWTC	3 cut(s)	50, 305, 431
Tru1I	TTAA	1 cut(s)	771
Tru9I	TTAA	1 cut(s)	771
TscAI	CASTG	4 cut(s)	61, 187, 285, 648
TseFI	GTSAC	1 cut(s)	540
TseI	GCWGC	2 cut(s)	476, 479
Tsp45I	GTSAC	1 cut(s)	540
TspDTI	ATGAA	3 cut(s)	116, 587, 615
TspRI	CASTG	4 cut(s)	61, 187, 285, 648
VneI	GTGCAC	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	93, 347
XagI	CCTNNNNNAGG	1 cut(s)	82
XapI	RAATTY	1 cut(s)	199
XhoI	CTCGAG	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	766
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	4 cut(s)	204, 378, 545, 683
ZraI	GACGTC	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.