Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006211

Physical Location & Seq

Genomic Coordinates Reverse (-)

26119252 .. 26120873

Gene Structure 1622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1201600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCCTAATATCGTATTTTCACAGGTTGAGCTATGTGTTACTTACGAAGGATCTAGATTTGTTGTTGAGCTATGTGTTACTTACGAAGGATCTAGATTTGTAGTAAATGATCTTAGGTTGCTGATGGATACATTTCACCGTGTTGAGTTCACCAGCACTTGGCGGAGACTCTTTTCGCGGGTTAAGAAGCATATCATTTGGGGAGTTTTGAATTCTGTGACGGGAATGCAGGGTAAGAAGTTCAAGGACAAGGCTAACAGTCAGAGGGAACCCAGTGGATCGGGTGTTCCGGATAGTGACCTTAATTTCAGTGACAATGAAGGTCAGCCAGAACAGCCTGACCAGAATCCTATAACGTTTCTCAAGCGTCCAAGTGACGGAGCAGGTGATGGATTTGTCACTTCCATCAGAGGCCTTTTCAATACTCAACGTCGCAAGGCCAAAGCATTCGTACTGCGAACCATGAGGGGTGAAGCAGAGAATGATTTCCAAGGAGATTGGAATGAAAGTGATGCAGAGTTCTCTCCACTTGCTAGGCAGCTCACTATAACGAAAGCTAAGAGACTTATCCGGCGGCAAACGAAAAATTTCCGTTCAAGAAAAGGTTCATCCTCACAACAGAGAGATTCACTCGCATCCTCGCCAAGGGAGACCACTGCATTCGAGAGTGATTCTTCGAGTGGATCCTCGCCCTACGAAGATTTTAATGAGGGAAACATTTTGTCCTCCAGAGAGGTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0005575 GO:0005623 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0009267 GO:0009605 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010015 GO:0010053 GO:0010054 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0016036 GO:0016043 GO:0016049 GO:0021700 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030154 GO:0030307 GO:0030427 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032989 GO:0033554 GO:0035618 GO:0035619 GO:0035838 GO:0040007 GO:0040008 GO:0042594 GO:0042995 GO:0044463 GO:0044464 GO:0044706 GO:0045927 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051286 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0070297 GO:0070298 GO:0071496 GO:0071695 GO:0071840 GO:0080147 GO:0090404 GO:0090406 GO:0090558 GO:0090627 GO:0099402 GO:0120025 GO:0120038 GO:1902531 GO:1902532 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Apt1 Fmp27_GFWDK

Protein Analysis

248

Amino Acids

27.95

Weight (kDa)

9.12

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hobbit	PF10344	22 - 167	8.8e-38	Hobbit/FMP27/BTLP2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58250 AT1G58250 AT5G49680
fragaria_vesca	FvH4_5g34390
malus_domestica	MD08G1201600.v1.1 MD08G1201800.v1.1 MD08G1202400.v1.1 MD08G1208300.v1.1 MD15G1388100.v1.1
prunus_persica	Prupe.1G535700_v2.0.a1 Prupe.1G535700_v2.0.a1 Prupe.1G535700_v2.0.a1 Prupe.1G535700_v2.0.a1
pyrus_communis	pycom15g34840
rosa_chinensis	RchiOBHm_Chr7g0235041
rosa_laevigata	RLG00000001185
rosa_multiflora	Rmu_co8243721.1_g000001 Rmu_sc0002239.1_g000001 Rmu_sc0013687.1_g000001 Rmu_sc0015410.1_g000007
rosa_roxburghii	Rroxscaffold_3G00226360
rosa_rugosa	Rorug07G0287300
rosa_samantha	Rh7AG442100 Rh7BG414600 Rh7CG463100 Rh7DG431700
rosa_wichuraiana	Rw7G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	374
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccII	CGCG	1 cut(s)	178
AccIII	TCCGGA	1 cut(s)	289
AciI	CCGC	3 cut(s)	163, 178, 574
AclI	AACGTT	1 cut(s)	356
AclWI	GGATC	5 cut(s)	58, 97, 286, 678, 691
AcsI	RAATTY	2 cut(s)	211, 586
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	3 cut(s)	159, 377, 645
AgsI	TTSAA	4 cut(s)	211, 244, 421, 597
AloI	GAACNNNNNNTCC	2 cut(s)	270, 302
AluBI	AGCT	4 cut(s)	31, 70, 541, 557
AluI	AGCT	4 cut(s)	31, 70, 541, 557
Alw26I	GTCTC	3 cut(s)	160, 556, 644
AlwI	GGATC	5 cut(s)	58, 97, 286, 678, 691
Aor13HI	TCCGGA	1 cut(s)	289
AoxI	GGCC	2 cut(s)	412, 438
ApeKI	GCWGC	1 cut(s)	538
ApoI	RAATTY	2 cut(s)	211, 586
Asp700I	GAANNNNTTC	3 cut(s)	485, 587, 604
AsuHPI	GGTGA	4 cut(s)	128, 142, 398, 482
BamHI	GGATCC	1 cut(s)	683
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	3 cut(s)	118, 383, 413
BciVI	GTATCC	1 cut(s)	121
BcoDI	GTCTC	3 cut(s)	160, 556, 644
BfaI	CTAG	3 cut(s)	54, 93, 534
BfuAI	ACCTGC	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	121
BisI	GCNGC	2 cut(s)	539, 575
BlsI	GCNGC	2 cut(s)	540, 576
BmiI	GGNNCC	3 cut(s)	270, 685, 738
BmrI	ACTGGG	1 cut(s)	267
BmsI	GCATC	2 cut(s)	502, 644
BmuI	ACTGGG	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	615, 647
BpmI	CTGGAG	1 cut(s)	712
BpuEI	CTTGAG	1 cut(s)	347
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	2 cut(s)	490, 644
BsaWI	WCCGGW	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 377, 645
Bse1I	ACTGG	1 cut(s)	273
BseAI	TCCGGA	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	490, 644
BseGI	GGATG	2 cut(s)	608, 635
BseLI	CCNNNNNNNGG	3 cut(s)	159, 377, 645
BseNI	ACTGG	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	2 cut(s)	414, 440
BsiSI	CCGG	2 cut(s)	290, 571
BslI	CCNNNNNNNGG	3 cut(s)	159, 377, 645
BsmAI	GTCTC	3 cut(s)	160, 556, 644
BsmI	GAATGC	3 cut(s)	231, 446, 659
BsnI	GGCC	2 cut(s)	414, 440
Bso31I	GGTCTC	1 cut(s)	644
Bsp13I	TCCGGA	1 cut(s)	289
Bsp143I	GATC	5 cut(s)	50, 89, 109, 278, 683
BspACI	CCGC	3 cut(s)	163, 178, 574
BspANI	GGCC	2 cut(s)	414, 440
BspEI	TCCGGA	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	3 cut(s)	270, 685, 738
BspMI	ACCTGC	1 cut(s)	374
BspPI	GGATC	5 cut(s)	58, 97, 286, 678, 691
BspTNI	GGTCTC	1 cut(s)	644
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	490, 644
BssMI	GATC	5 cut(s)	50, 89, 109, 278, 683
BssT1I	CCWWGG	2 cut(s)	490, 644
Bst4CI	ACNGT	2 cut(s)	140, 260
BstDEI	CTNAG	2 cut(s)	113, 558
BstENI	CCTNNNNNAGG	1 cut(s)	643
BstF5I	GGATG	2 cut(s)	608, 635
BstFNI	CGCG	1 cut(s)	178
BstKTI	GATC	5 cut(s)	53, 92, 112, 281, 686
BstMAI	GTCTC	3 cut(s)	160, 556, 644
BstMBI	GATC	5 cut(s)	50, 89, 109, 278, 683
BstMWI	GCNNNNNNNGC	1 cut(s)	334
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	550
BstX2I	RGATCY	3 cut(s)	50, 89, 683
BstYI	RGATCY	3 cut(s)	50, 89, 683
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	414, 440
BtsCI	GGATG	2 cut(s)	608, 635
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	3 cut(s)	280, 316, 654
BveI	ACCTGC	1 cut(s)	374
CseI	GACGC	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	452
CviAII	CATG	1 cut(s)	463
CviJI	RGCY	9 cut(s)	31, 70, 254, 328, 337, 414, 440, 541, 557
CviKI_1	RGCY	9 cut(s)	31, 70, 254, 328, 337, 414, 440, 541, 557
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	2 cut(s)	113, 558
DpnI	GATC	5 cut(s)	52, 91, 111, 280, 685
DpnII	GATC	5 cut(s)	50, 89, 109, 278, 683
EciI	GGCGGA	1 cut(s)	178
Eco130I	CCWWGG	2 cut(s)	490, 644
Eco147I	AGGCCT	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	644
EcoNI	CCTNNNNNAGG	1 cut(s)	643
EcoRI	GAATTC	1 cut(s)	211
EcoT14I	CCWWGG	2 cut(s)	490, 644
ErhI	CCWWGG	2 cut(s)	490, 644
FaeI	CATG	1 cut(s)	466
FaiI	YATR	6 cut(s)	34, 73, 192, 353, 464, 548
FatI	CATG	1 cut(s)	462
FauI	CCCGC	1 cut(s)	171
Fnu4HI	GCNGC	2 cut(s)	539, 575
FokI	GGATG	2 cut(s)	595, 622
Fsp4HI	GCNGC	2 cut(s)	539, 575
FspBI	CTAG	3 cut(s)	54, 93, 534
GluI	GCNGC	2 cut(s)	539, 575
GsuI	CTGGAG	1 cut(s)	712
HaeIII	GGCC	2 cut(s)	414, 440
HapII	CCGG	2 cut(s)	290, 571
HgaI	GACGC	1 cut(s)	356
Hin1II	CATG	1 cut(s)	466
HinfI	GANTC	4 cut(s)	168, 346, 626, 671
HpaII	CCGG	2 cut(s)	290, 571
HphI	GGTGA	4 cut(s)	128, 142, 398, 482
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	2 cut(s)	264, 410
Hpy188III	TCNNGA	6 cut(s)	54, 93, 290, 597, 664, 729
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	1 cut(s)	435
HpyAV	CCTTC	3 cut(s)	41, 80, 314
HpyCH4III	ACNGT	2 cut(s)	140, 260
HpyCH4IV	ACGT	2 cut(s)	356, 430
HpyCH4V	TGCA	3 cut(s)	229, 515, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	334
HpyF3I	CTNAG	2 cut(s)	113, 558
HpySE526I	ACGT	2 cut(s)	356, 430
Hsp92II	CATG	1 cut(s)	466
Kpn2I	TCCGGA	1 cut(s)	289
Kzo9I	GATC	5 cut(s)	50, 89, 109, 278, 683
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	2 cut(s)	502, 644
MaeI	CTAG	3 cut(s)	54, 93, 534
MaeII	ACGT	2 cut(s)	356, 430
MaeIII	GTNAC	7 cut(s)	37, 76, 217, 296, 311, 374, 397
MalI	GATC	5 cut(s)	52, 91, 111, 280, 685
MboI	GATC	5 cut(s)	50, 89, 109, 278, 683
MboII	GAAGA	2 cut(s)	666, 710
MflI	RGATCY	3 cut(s)	50, 89, 683
MluCI	AATT	3 cut(s)	211, 304, 586
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	9 cut(s)	258, 404, 459, 622, 649, 697, 703, 727, 736
MroI	TCCGGA	1 cut(s)	289
MroXI	GAANNNNTTC	3 cut(s)	485, 587, 604
MseI	TTAA	3 cut(s)	183, 303, 705
MspI	CCGG	2 cut(s)	290, 571
Mva1269I	GAATGC	3 cut(s)	231, 446, 659
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	334
NdeII	GATC	5 cut(s)	50, 89, 109, 278, 683
NlaIII	CATG	1 cut(s)	466
NlaIV	GGNNCC	3 cut(s)	270, 685, 738
NmuCI	GTSAC	5 cut(s)	217, 296, 311, 374, 397
PaqCI	CACCTGC	1 cut(s)	374
PceI	AGGCCT	1 cut(s)	414
PctI	GAATGC	3 cut(s)	231, 446, 659
PdmI	GAANNNNTTC	3 cut(s)	485, 587, 604
PfeI	GAWTC	3 cut(s)	346, 626, 671
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	540, 576
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp1406I	AACGTT	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	270, 685, 738
PsuI	RGATCY	3 cut(s)	50, 89, 683
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
SaqAI	TTAA	3 cut(s)	183, 303, 705
SatI	GCNGC	2 cut(s)	539, 575
Sau3AI	GATC	5 cut(s)	50, 89, 109, 278, 683
SchI	GAGTC	1 cut(s)	162
SfaNI	GCATC	2 cut(s)	502, 644
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	211, 304, 586
SseBI	AGGCCT	1 cut(s)	414
SsiI	CCGC	3 cut(s)	163, 178, 574
SspMI	CTAG	3 cut(s)	54, 93, 534
StuI	AGGCCT	1 cut(s)	414
StyI	CCWWGG	2 cut(s)	490, 644
TaaI	ACNGT	2 cut(s)	140, 260
TaiI	ACGT	2 cut(s)	359, 433
TaqI	TCGA	2 cut(s)	663, 677
TasI	AATT	3 cut(s)	211, 304, 586
TauI	GCSGC	1 cut(s)	577
TfiI	GAWTC	3 cut(s)	346, 626, 671
Tru1I	TTAA	3 cut(s)	183, 303, 705
Tru9I	TTAA	3 cut(s)	183, 303, 705
TscAI	CASTG	3 cut(s)	280, 316, 661
TseFI	GTSAC	5 cut(s)	217, 296, 311, 374, 397
TseI	GCWGC	1 cut(s)	538
Tsp45I	GTSAC	5 cut(s)	217, 296, 311, 374, 397
TspDTI	ATGAA	3 cut(s)	333, 519, 597
TspGWI	ACGGA	2 cut(s)	393, 581
TspRI	CASTG	3 cut(s)	280, 316, 661
Van91I	CCANNNNNTGG	1 cut(s)	159
XagI	CCTNNNNNAGG	1 cut(s)	643
XapI	RAATTY	2 cut(s)	211, 586
XbaI	TCTAGA	2 cut(s)	53, 92
XmnI	GAANNNNTTC	3 cut(s)	485, 587, 604
XspI	CTAG	3 cut(s)	54, 93, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.