Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006211

Physical Location & Seq

Genomic Coordinates Reverse (-)

9849136 .. 9871181

Gene Structure 22046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00226360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 7434 bp

ATGGCGGCTTCGCCCGTCAAGTTCCTCTTCGGTTTCTTGATCCTCTGCATCACATTGTGGCTGCTCTTCATATTTGCTTCAAGGTTTATAGCTTGGATTTTAAGCCGCGTATTAGGAGCATCTGTCAAATTTCGGGTCGCTGGATGGGTATTTGTCAGGGATGTCGTGGTGAAGTTTAAAAAGGGCCCTGTTGAATCTATTTCCATTGGGGAAATTAAACCCAGCATACGTCGGTCCTTGGTCAAACTAGGGGTTGGTTTTATTTCTAAAGATCCCAAGTTGCAAGTGGTAATATCTGACTTGGAAGTTGTAATGAGGTCTTCAAATAAGAGTACACCAAAGGCAAAGGCAAAGGCCAAGTCTGGATCTCGAAAATCCCGCAATTCAGGCCGTGGAAAGTGGATGGTAGGGGCCAATATTGCACGATATTTATCTGTTTCCATCACAGACTTGGTTTTGAAGACGCCAAAAATTTCCATTGAAGTAAAGGAATTGAAAGTGGACATATCTAAAGATGGTACATCCAAGCAAAATCTTATTGTCAAGCTACAGATATTACCTATTGTTGTTCAAAGGAATGAACCACGGGCCAGTTGTGACCAGTCATCCAGTTTTTGCATCGGAGAATCCCTTTCTGTAGGCCAGTCATCATCTGCTTTGGTGGACAGGTCATCTACTCTTTTTGTCTGTGAAGAATTTTCGCTCTCGTGTGAATTTGGTCATGATAGGGAAGTTGGTGTAATCTTCAAGAATGTGGATATTTCTAGTGGAGAGGTCAATGTGAACCTGAATGAGGAGCTACTTTCAAAAAGCAAAAGCTCATCAAACACTTCATGTGAACCTGATAAAGCTATAGAATCCTCCACCGATTCTATTGCTTCTAAGAAGGCACAAAAAAAGCAACAAATGAGTGATGCGATCTCAAAATGCACCACTTTATTTCCTGAAAAGGTTTCCTTCAATTTGCCAAAACTGGATGTGAGATTTGAGCATCGGGAACATGATTTTGCTCTTGAGAATAACATCATGGGCATCCAATTGAAAAGCATCAAATCACAATCAAGTGAAGATATGGGAGAAAGCACGCGCCTTGATGTTCAATTAGAATTCAGCGAGATTCATCTGCTGCGAGAAGCTGGCACTTCCGTTTTGGAGATACTGAAACTTGATGTTATCTCATTTTTGTACATTCCAATACAGCCAAGCTCTCCTATTAGAGCTGAAATTGATGTAAAGCTGGGTGGTACTCAATGCAACCTTATAATGAACAGATTAAAGCCATTGTTGCGCCTCCACTTCTCGAAAAAGAAAAGAATGGTACTTCAGGAGGAAAAGCCTACTCTTGACAAGACATCTCCAACAATGGATACCAATATTATCATGTGGACATGTACTTTTTCAGCCCCTGAGATGACAGTTGTGCTTCATAGCCTCAGTGGTTTGCCACTCTATCATGTCTGCTCACAATCATCACATGTATTTGCAAATAACATATCAAATACTGGAACTACTGTACATATGGAGCTCGGTGAACTTAATTTGCATATGGCAGATGAATACCAACAATGCTTGAAAGAAAACCTTTTTGGTGTGGAATCAAATTCAGGCTCCATAGTCAATGTTGCAAAGGTTAGTCTAGATTGGGGCAAAAAGGACATGGAATCATCTGAAGAAGGTGCTTCTAAAAGTAAATTACTTTTATCTGTTGATGTGACTGGTATGGCTGTTTATTTTACTTTCAAGCGTGTTGAGTCGTTTATATCAACTGCCATGTCATTTCAAGCACTTTTTAAGAATTTGTCGTCTTCTGAAAAAAGAACATCACAAAGCCGAGGAGGGCGATCATCAAAATCCTCAGGGAAAGGGACTCGGCTATTGAAATTAAATCTTGAACGGTGTTCTTTGAATTTCTGTGGTGAGGTGGGTTTAGAAAAAATGGTTGTTCCAGACCCTAAGCGTGTAAATTATGGGTCACAAGGTGGTCGAATTGTTATAAGTGAGTCGGCTGATGGCACTCCACGGGTTGCAGAAGTAATTTCCACAGTATCTGATGATTGTAAGAACTTAAAGTACTCCATTTCTCTTGACATCTTCCATTTCAGCTTATGTGTGAACAAGGAAAAACAATCCACCCAGGTTGAACTTGAAAGAGCCAGATCTATCTATCAGGACTACTTGGAGGAACATAAGCCCGAACCAAAATTGGTACTGTTTGATATGCAGAATGCTAAATTTGTACGACGTTCTGGTGGTCTTAAAGAGATTGCTGTCTGTTCTCTTTTCAGTGCTACTGATATTACGATTAGATGGGAGCCTGATGTACATTTATCACTAATTGAACTTGGACTTCGATTGAAGTTACTGGTGCACAATCAGAAGCTTCAGGTACATGGTAAAGAACATATGGAAAATGTATCTAGCATGAGCAACTCTGAACAGAAGAAAGAAGCCATTACAGAACCAGTAAATTTAGACAAGCAAAAGAAAAGGGAATCTATCTTTGCTGTTGATGTGGAAATGCTGAATGTTTATGCTGAGGTTGGAGATGGAGTTGATGCAGTAGTCCAGGTACAGTCAATATTTTCTGAGAATGCTCGCATAGGAGTACTTCTGGAAGGATTTCTGCTTTGTTTCAATGGGTGCAGAATACTCAAAAGTAGCCGGATGCAAATTTCACGTATTCCTAGTGCCTCTTGTGCCCCTGATGCGAAAATACCTCCATCTACCACATGGGATTGGGTAATTCAAGGCCTTGATGTTCATATTTGCTTACCATACAGGTTAGAATTGCGTGCCATTGATGATTCTGTTGAAGAGATGCTGCGTGCTCTAAAGCTTGTAGCTGCTGCTAAAACTAGTCTTATCTTTCCGGTGAAGAAAGATCTTTCAAAAGCTAAGAAGCCCAGTTCAGTAAAATTTGGGTGTTTAAAGTTTTTAATACGGAGGTTAACTTTTGATATTGAAGAAGAACCACTGCAAGGTTGGCTTGATGAACACTATCACTTAATGAAGAATGAGGCATCTGAGTTAGCTGTTAGGTTGAAGTTGCTTGATGAATTTATTTCCAAAGTCAGCCAGTCTCCCAAACCCACTGAAACAAATGATTCTACTCGAGAAAGAAAGACTTCCTTTAATGGAGTTGAGATTGACGTACAAGATCCTTCAGCAGTTAGTGAGATGCAAGAAGAAATTTATAAACAATCATTCAGATCTTATTACAAGGCATGTCAGAATCTAGCACGATCAGAGGGTTCAGGTGCCTGTAGGGAAGGGCTTCAGGCTGGTTTTAAGCCTAGTACATCCAGAACTTCTCTTCTTTCTATATCAGCAACAGATTTAGATGTAAGCTTGACATTGATTGATGGTGGTGATGATGGGATGATAGATGTTATAAAGATGCTGGATCCTGTCTGTCGTGAAAATAATATACCATTTTCTAAACTTTATGGGGGTAATATTCTCCTGCACACAGGCTCACTTGTGGTTCAGCTACGTGACTTTACATTTCCTCTCTTGTCCGGAACTTCTGGTAAATGTGAAGGTCGCCTTGTGCTAGGACAGCAGGCAACAAGTTTTCAGCCTCAAGTACACAAAGATGTCTACATTGGGAAATGGAGAAAGGTGCACTTGCTTCGTTCTGCTACTGGTACAACTCCACCTATGAAAACATTCACAGATTTGTCCCTACGTTTTCAGAAAGCTGAGGTGTCCTTTGGAGTGGGATATGAACCACCTTTCGCTGATGTGAGTTATGCGTTTACTGTGGCTCTTCGCAGGGCTAATCTATGCATTAGGGACCCTAATCCACAACCCTTGCCACCAAAGAAGGAAAAGAGCTTGCCATGGTGGGATGATATGAGAAACTACATTCATGGAAACATCAAGGTTCTCTTTTCTGAAACCATATGGAATATTCTTGCGACTACTGATCCGTATGAAAAGCTTGACAAACTTCAAGTAACAGCTAGTCCTATGGAGATCCAGCAGTCAGATGGTCGTATTCATGTTTCTGCGAATGATTTTAAGGTTTTCTCAAGCAGTTTGGACACTCTGGCAAATAATCGTGGTTTAAAACTTCCTAAAGGTATATCTGGTCCTGTAATAGAAGCTCCAGCATTAACTGTTGAAGTTACAATGGATTGGGAATGTGAGTCTGGAAATCCTATGGATCATTATTTATTTGCACTTCCTATTGAAGGGAAACCTCGTGAAAAGGTGTTTGATCCATTCAGATCCACCTCTCTGTCCCTTCGCTGGAATATCTTGCTTAGACGTTCTCCCTTACGCGAGAAACAAGCTCCACATTCTAATGCGGTAGATGGTGTGGATGTAGATGGAACTGTTTACGGTCCTCCTCATAAGGAGGAGAATGTTTCCATTCTTCCACCAACAGTGAATGTTGGCGCTCATGATCTAGCATGGATTCTGAAGTTTTATAACATGCATTATCTTCCTCCTCACAAATTGCGGGCCTTTGCTCGTTTTCCTCGTTTTGGAGTTCCAAGAATCCCTAGATCCGGTAACTTGTCCTTGGACAGAGTGATGACAGAATTTATGCTCCGTGTTGATGCTTCGCCTACTTGTATAAAGCATGTACCTTTAGATGATGACGATCCAGCTAAAGGACTGACATTCTTTATGACAAAGTTGAAATTGGAAATGTGTTCGAGCCGGGGTAAGCAAAAGTATACTTTTGATTGCAAGCGTGCACCTCTTGATCTTGTTTACCAGGGCCTTGACCTTCATATGCCCAAGGCATTTTTAAACAGAGAAGAAAGCACTAGTGTTGCAAAAGTAGTTCAAATGACGATAAAAAACTCACAACCTGCATCAGTAGATAGAGTTCCAACTGAAAAGAGTAGCAACATGAGTAGTGGCACAGAGAAGCATCGGGATGATGGATTTCTATTGTCATCAGAGTATTTCACGATCAGAAGGCAGGCCCCGAAGGCTGATCCTGTTAGTTTATTAGCTTGGCAAGAGGCTGGAAGAAAAAATCTTGAGATGACTTATGTGAGGTCTGAATTTGAAAATGGAAGTGAGAGTGACGAGCATACCCGATCTGATCCAAGTGACGATGATGGATACAATGTGGTAATAGCTGACAATTGCCAACGTATATTTGTCTATGGACTCAAACTTCTGTGGAATATTGAGAATAGAGATGCTGTTTGGTCCTTTGTTGGTGGTCTATCCAAAGCATTTCAAGCCCCCAAACCTTCTCCCTCTAGGCAGTATGCACAAAAGAAATTACTTGAGGAGCAGCAGTCACACAGTGGAGGTGAAATGCAGCAAGATGGTAGCTCTAAGCCCACCACTACCAGCCATGGTGCTGCTCCTGCAGAGGTATCTGGTTCACTATCATCTCTGTCACCTTCCGTCAAATCGGAGATCTCATCATCTGCAGTTGACAACTCTTCATCTGGTGTAGTAGAAAAGCATAGAGAGACCAAAGATGCAGAGGAGGACGGGACTCGTCATTTCATGGTGAATGTTATTGAGCCCCAATTCAATCTTCATTCTGAAGATGCCAATGGAAGGTTTTTGCTTGCTGCTGTTAGTGGCCGTGTTTTGGCCCGGTCATTTCATTCAGTTCTTCATGTTGGCTCTGAGATGATTGAGAAGCTTCGTACTGATAATTTAAATATACCGGAATGTGAACCGGAAATGACATGGAAACGCATGGAATTTTCTGTAATGTTAGAGCATGTTCAAGCTCATGTTGCTCCAACAGATGTTGATCCTGGAGCTGGATTGCAGTGGCTTCCAAAAATTCGTAGAAGCTCTCCAAAAGTAAAACGTACTGGTGCTTTACTTGAAAGGGTATTTATGCCCTGTGACATGTACTTCCGCTACACAAGGCACAAAGGTGGAACTCCAGAGTTGAAGGTGAAGCCCTTAAAAGAGCTGACTTTCAATTCCCATAATATCACGGCAACAATGACCTCTCGCCAATTTCAAGTTATGCTAGATGTGTTGACAAATCTTCTTTTTGCACGACTTCCCAAGCCTAGAAAAAGTAGTCTGTCACTGCCTGCTGAAGATGATGAAGATGTGGAGGAGGAGTCAGACGAAGTGGTTCCTGATGGTGTTGAAGAGGTGGAGCTTGCAAGAATAGAACTTGAGAAAAAGGAACGGGAGCAGAGATTGATTCTTGGGGACATAAGAAAGTTATCCCTTCACTGTGATACCACTGGAGACCTATATCCAGAAAAGGAAGGGGACTTGTGGATGATAAGTTGTACAAGATCTACTCTGGTGCAAGGACTAAAGAGAGAGCTGGTTAATTCAAAAAAATCTAGGAAAGCTGCATATGCTTCATTAAGAATGGCTCTACATAAGGCTGCTCAGCTACGGCTAATGGAAAAGGAGAAAAACAAAAGTCCATCCTATGCTATGCGCATTTCTTTGCAAATTAACAAAGTGGTTTGGAGCATGCTTGTTGATGGTAAATCTTTTGCCGAGGCTGAGATCAATGACATGATTTATGACTTCGACCGAGATTACAAGGATGTTGGTGTTGCTCAGTTTACAACAAAAAATTTTGTCGTTAGAAATTGCCTCCCAAATGCCAAATCAGATATGCTTTTATCAGCATGGAATCCTCCACCTGAATGGGGAAAAAAAGTTATGCTTCGTGTGGATGCAAAGCAGGGAGCTCCAAAGGATGGAAGTTCTCCTCTGGAACTTTTTGAGGTAGAGATTTATCCTCTCAAGATCCATTTAACAGAAACAATGTACAGAATGATGTGGGGATATTTATTCCCAGAAGAAGAACAGGATTCACAAAGACGGCAGGAAGTTTGGAAGATCTCAACAACTACTGGTACAAAACGTGGAAAGAAAGCTTCTTTAGTCCCTGACATGTCTGCATTTAGCAGTCAAACAATGAAGGAGTCTGAGGGGTCATCCAAATCAAGTGCCTTGGCCCCTGGTACCAGTCAATCCCCTGTTCCTGCAGATTCTGTACAAGAATCAAAATTGCAAAGTAAAGCACTCATTGCGAGTGGTCCGAATCCTGAGTTAAGAAGAACATCTTCATTTGACAGATCATGGGAAGAGACTGTTGCAGAATCAGTTGCTACGGAACTTGTCTTACAGAGCATTAGTGGGCCTCTTGGGTCTATTGAACAAGATGAATCCTCTAAGAATAAATTGAAAGATCCCAAAGCTATCAAATCTGGCAGGTCATCCCATGAAGAAAAGAAGGTACAAAAGTCACAAGAAGAGAAAAAATCTGCCAGGCCTCGAAAGATGATGGAGTTTCACAATATCAAGATAAGCCAGGTTGAGCTATGTGTTACCTATGAAGGATCTAGATTTGTGGTAAATGATCTCAAGTTGCTGATGGATACATTTCACCGTGTTGAGTTTACTGGTACTTGGCGGAGACTTTTTCACGTGTTAAGAAGCACATCATTTGGGGAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0005575 GO:0005623 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0009267 GO:0009605 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010015 GO:0010053 GO:0010054 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0016036 GO:0016043 GO:0016049 GO:0021700 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030154 GO:0030307 GO:0030427 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032989 GO:0033554 GO:0035618 GO:0035619 GO:0035838 GO:0040007 GO:0040008 GO:0042594 GO:0042995 GO:0044463 GO:0044464 GO:0044706 GO:0045927 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051286 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0070297 GO:0070298 GO:0071496 GO:0071695 GO:0071840 GO:0080147 GO:0090404 GO:0090406 GO:0090558 GO:0090627 GO:0099402 GO:0120025 GO:0120038 GO:1902531 GO:1902532 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Apt1 Fmp27_GFWDK

Protein Analysis

2477

Amino Acids

277.46

Weight (kDa)

8.47

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hobbit	PF10344	4 - 2470	0.0	Hobbit/FMP27/BTLP2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58250 AT1G58250 AT5G49680
fragaria_vesca	FvH4_5g34390
malus_domestica	MD08G1201600.v1.1 MD08G1201800.v1.1 MD08G1202400.v1.1 MD08G1208300.v1.1 MD15G1388100.v1.1
prunus_persica	Prupe.1G535700_v2.0.a1 Prupe.1G535700_v2.0.a1 Prupe.1G535700_v2.0.a1 Prupe.1G535700_v2.0.a1
pyrus_communis	pycom15g34840
rosa_chinensis	RchiOBHm_Chr7g0235041
rosa_laevigata	RLG00000001185
rosa_multiflora	Rmu_co8243721.1_g000001 Rmu_sc0002239.1_g000001 Rmu_sc0013687.1_g000001 Rmu_sc0015410.1_g000007
rosa_roxburghii	Rroxscaffold_3G00226360
rosa_rugosa	Rorug07G0287300
rosa_samantha	Rh7AG442100 Rh7BG414600 Rh7CG463100 Rh7DG431700
rosa_wichuraiana	Rw7G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	5 cut(s)	1262, 1994, 3195, 3392, 4437
Acc16I	TGCGCA	1 cut(s)	6401
Acc36I	ACCTGC	2 cut(s)	4834, 7176
Acc65I	GGTACC	1 cut(s)	6935
AccB1I	GGYRCC	2 cut(s)	3257, 6935
AccB7I	CCANNNNNTGG	1 cut(s)	6668
AccI	GTMKAC	2 cut(s)	3600, 4688
AccII	CGCG	3 cut(s)	108, 1087, 4287
AccIII	TCCGGA	1 cut(s)	3518
AciI	CCGC	7 cut(s)	5, 106, 379, 4313, 4468, 5851, 7387
AcoI	YGGCCR	1 cut(s)	5563
AcuI	CTGAAG	8 cut(s)	1307, 1689, 2366, 3147, 3260, 4448, 5544, 6060
AcvI	CACGTG	1 cut(s)	7402
AcyI	GRCGYC	1 cut(s)	464
AdeI	CACNNNGTG	3 cut(s)	57, 1979, 5276
AflIII	ACRYGT	5 cut(s)	1388, 1474, 5841, 6864, 7401
AhlI	ACTAGT	2 cut(s)	2855, 4781
AjnI	CCWGG	7 cut(s)	2133, 2565, 4728, 5743, 6931, 7241, 7284
AjuI	GAANNNNNNNTTGG	4 cut(s)	1569, 1601, 5499, 5531
AleI	CACNNNNGTG	1 cut(s)	5868
Alw21I	GWGCWC	6 cut(s)	1527, 2370, 2830, 3627, 4711, 6661
Alw26I	GTCTC	5 cut(s)	3084, 5441, 6192, 7055, 7384
Alw44I	GTGCAC	3 cut(s)	2366, 3623, 4707
AlwNI	CAGNNNCTG	3 cut(s)	1406, 2048, 6965
Ama87I	CYCGRG	1 cut(s)	3111
Aor13HI	TCCGGA	1 cut(s)	3518
ApaI	GGGCCC	1 cut(s)	188
ApaLI	GTGCAC	3 cut(s)	2366, 3623, 4707
ArsI	GACNNNNNNTTYG	4 cut(s)	120, 152, 344, 376
Asp700I	GAANNNNTTC	6 cut(s)	2619, 3124, 3273, 3668, 6078, 7036
Asp718I	GGTACC	1 cut(s)	6935
AspLEI	GCGC	4 cut(s)	1089, 1290, 4406, 6402
AsuC2I	CCSGG	2 cut(s)	4673, 5578
AvaI	CYCGRG	1 cut(s)	3111
AvaII	GGWCC	6 cut(s)	234, 3796, 4094, 4349, 5175, 7010
AxyI	CCTNAGG	1 cut(s)	1855
BaeGI	GKGCMC	5 cut(s)	188, 2370, 2701, 3627, 4711
BaeI	ACNNNNGTAYC	2 cut(s)	7202, 7235
BamHI	GGATCC	1 cut(s)	3403
BanI	GGYRCC	2 cut(s)	3257, 6935
BanII	GRGCYC	4 cut(s)	188, 1527, 5505, 6661
BauI	CACGAG	2 cut(s)	706, 4206
BbrPI	CACGTG	1 cut(s)	7402
BbsI	GAAGAC	3 cut(s)	312, 467, 1797
Bbv12I	GWGCWC	6 cut(s)	1527, 2370, 2830, 3627, 4711, 6661
BbvCI	CCTCAGC	2 cut(s)	2535, 3702
BceAI	ACGGC	5 cut(s)	375, 5550, 5949, 6371, 6809
BcgI	CGANNNNNNTGC	4 cut(s)	857, 891, 3614, 3648
BciT130I	CCWGG	7 cut(s)	2135, 2567, 4730, 5745, 6933, 7243, 7286
BciVI	GTATCC	3 cut(s)	1360, 5078, 7345
BcnI	CCSGG	2 cut(s)	4673, 5578
BcoDI	GTCTC	5 cut(s)	3084, 5441, 6192, 7055, 7384
BcuI	ACTAGT	2 cut(s)	2855, 4781
BfmI	CTRYAG	7 cut(s)	548, 636, 852, 3262, 5340, 5403, 6957
BfoI	RGCGCY	1 cut(s)	4407
BfuAI	ACCTGC	2 cut(s)	4834, 7176
BfuI	GTATCC	3 cut(s)	1360, 5078, 7345
BglI	GCCNNNNNGGC	1 cut(s)	4949
BglII	AGATCT	6 cut(s)	2156, 2881, 3209, 5391, 6248, 6810
BlpI	GCTNAGC	1 cut(s)	6348
BmcAI	AGTACT	2 cut(s)	2072, 2607
Bme1390I	CCNGG	9 cut(s)	2135, 2567, 4673, 4730, 5578, 5745, 6933, 7243, 7286
Bme18I	GGWCC	6 cut(s)	234, 3796, 4094, 4349, 5175, 7010
BmeT110I	CYCGRG	1 cut(s)	3111
BmrFI	CCNGG	9 cut(s)	2135, 2567, 4673, 4730, 5578, 5745, 6933, 7243, 7286
BmrI	ACTGGG	1 cut(s)	2898
BmuI	ACTGGG	1 cut(s)	2898
BpiI	GAAGAC	3 cut(s)	312, 467, 1797
BpmI	CTGGAG	4 cut(s)	4095, 5766, 5862, 6216
Bpu10I	CCTNAGC	3 cut(s)	1953, 2535, 3702
Bpu1102I	GCTNAGC	1 cut(s)	6348
BpuEI	CTTGAG	8 cut(s)	1034, 3567, 4018, 5021, 5276, 6143, 6698, 7322
BpuMI	CCSGG	2 cut(s)	4673, 5578
BsaAI	YACGTR	3 cut(s)	2678, 3494, 7402
BsaBI	GATNNNNATC	3 cut(s)	430, 4611, 5739
BsaHI	GRCGYC	1 cut(s)	464
BsaI	GGTCTC	2 cut(s)	5441, 6192
BsaWI	WCCGGW	5 cut(s)	2869, 3518, 4517, 5650, 5662
BsaXI	ACNNNNNCTCC	8 cut(s)	108, 138, 2535, 2565, 5252, 5282, 6050, 6080
Bse21I	CCTNAGG	1 cut(s)	1855
Bse3DI	GCAATG	1 cut(s)	6999
Bse8I	GATNNNNATC	3 cut(s)	430, 4611, 5739
BseAI	TCCGGA	1 cut(s)	3518
BseBI	CCWGG	7 cut(s)	2135, 2567, 4730, 5745, 6933, 7243, 7286
BseJI	GATNNNNATC	3 cut(s)	430, 4611, 5739
BseMI	GCAATG	1 cut(s)	6999
BseSI	GKGCMC	5 cut(s)	188, 2370, 2701, 3627, 4711
BseYI	CCCAGC	2 cut(s)	221, 1237
BsgI	GTGCAG	2 cut(s)	2662, 3449
Bsh1236I	CGCG	3 cut(s)	108, 1087, 4287
Bsh1285I	CGRYCG	1 cut(s)	6499
BshNI	GGYRCC	2 cut(s)	3257, 6935
BsiEI	CGRYCG	1 cut(s)	6499
BsiHKAI	GWGCWC	6 cut(s)	1527, 2370, 2830, 3627, 4711, 6661
BsiHKCI	CYCGRG	1 cut(s)	3111
BsiSI	CCGG	8 cut(s)	2662, 2870, 3519, 4518, 4672, 5578, 5651, 5663
BslFI	GGGAC	8 cut(s)	1879, 3667, 3809, 4231, 5485, 6173, 6236, 6842
BsmAI	GTCTC	5 cut(s)	3084, 5441, 6192, 7055, 7384
BsmFI	GGGAC	8 cut(s)	1879, 3667, 3809, 4231, 5485, 6173, 6236, 6842
BsmI	GAATGC	2 cut(s)	2230, 2596
Bso31I	GGTCTC	2 cut(s)	5441, 6192
BsoBI	CYCGRG	1 cut(s)	3111
Bsp120I	GGGCCC	1 cut(s)	184
Bsp1286I	GDGCHC	9 cut(s)	188, 1527, 2370, 2701, 2830, 3627, 4711, 5505, 6661
Bsp13I	TCCGGA	1 cut(s)	3518
Bsp1407I	TGTACA	6 cut(s)	1185, 1513, 2320, 6242, 6738, 6967
Bsp1720I	GCTNAGC	1 cut(s)	6348
Bsp19I	CCATGG	2 cut(s)	3842, 5326
BspACI	CCGC	7 cut(s)	5, 106, 379, 4313, 4468, 5851, 7387
BspEI	TCCGGA	1 cut(s)	3518
BspFNI	CGCG	3 cut(s)	108, 1087, 4287
BspHI	TCATGA	2 cut(s)	721, 4408
BspMAI	CTGCAG	3 cut(s)	5344, 5407, 6961
BspMI	ACCTGC	2 cut(s)	4834, 7176
BspQI	GCTCTTC	2 cut(s)	71, 3774
BspT107I	GGYRCC	2 cut(s)	3257, 6935
BspTNI	GGTCTC	2 cut(s)	5441, 6192
BsrDI	GCAATG	1 cut(s)	6999
BsrGI	TGTACA	6 cut(s)	1185, 1513, 2320, 6242, 6738, 6967
BssNAI	GTATAC	1 cut(s)	4689
BssNI	GRCGYC	1 cut(s)	464
BssSI	CACGAG	2 cut(s)	706, 4206
BssT1I	CCWWGG	6 cut(s)	237, 3842, 4530, 4752, 5326, 6924
Bst1107I	GTATAC	1 cut(s)	4689
Bst2BI	CACGAG	2 cut(s)	706, 4206
Bst2UI	CCWGG	7 cut(s)	2135, 2567, 4730, 5745, 6933, 7243, 7286
Bst6I	CTCTTC	9 cut(s)	32, 71, 2808, 3318, 3774, 5422, 6090, 7053, 7221
BstACI	GRCGYC	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	7001
BstAUI	TGTACA	6 cut(s)	1185, 1513, 2320, 6242, 6738, 6967
BstBAI	YACGTR	3 cut(s)	2678, 3494, 7402
BstDSI	CCRYGG	5 cut(s)	391, 584, 2018, 3842, 5326
BstENI	CCTNNNNNAGG	2 cut(s)	791, 4194
BstFNI	CGCG	3 cut(s)	108, 1087, 4287
BstH2I	RGCGCY	1 cut(s)	4407
BstHHI	GCGC	4 cut(s)	1089, 1290, 4406, 6402
BstMAI	GTCTC	5 cut(s)	3084, 5441, 6192, 7055, 7384
BstMCI	CGRYCG	1 cut(s)	6499
BstNI	CCWGG	7 cut(s)	2135, 2567, 4730, 5745, 6933, 7243, 7286
BstNSI	RCATGY	9 cut(s)	1392, 1478, 3228, 4444, 4595, 5711, 5845, 6439, 6868
BstSCI	CCNGG	9 cut(s)	2133, 2565, 4671, 4728, 5576, 5743, 6931, 7241, 7284
BstSFI	CTRYAG	7 cut(s)	548, 636, 852, 3262, 5340, 5403, 6957
BstSLI	GKGCMC	5 cut(s)	188, 2370, 2701, 3627, 4711
BstUI	CGCG	3 cut(s)	108, 1087, 4287
BstV2I	GAAGAC	3 cut(s)	312, 467, 1797
BstXI	CCANNNNNNTGG	1 cut(s)	6615
BstZ17I	GTATAC	1 cut(s)	4689
Bsu36I	CCTNAGG	1 cut(s)	1855
BsuI	GTATCC	3 cut(s)	1360, 5078, 7345
BtgI	CCRYGG	5 cut(s)	391, 584, 2018, 3842, 5326
BtsI	GCAGTG	3 cut(s)	2972, 5765, 6029
BveI	ACCTGC	2 cut(s)	4834, 7176
CaiI	CAGNNNCTG	3 cut(s)	1406, 2048, 6965
CciI	TCATGA	2 cut(s)	721, 4408
CfoI	GCGC	4 cut(s)	1089, 1290, 4406, 6402
CseI	GACGC	1 cut(s)	472
CspCI	CAANNNNNGTGG	4 cut(s)	2119, 2154, 3795, 3830
DraI	TTTAAA	5 cut(s)	178, 2928, 4071, 4764, 5643
DraIII	CACNNNGTG	3 cut(s)	57, 1979, 5276
EaeI	YGGCCR	1 cut(s)	5563
Eam1104I	CTCTTC	9 cut(s)	32, 71, 2808, 3318, 3774, 5422, 6090, 7053, 7221
EarI	CTCTTC	9 cut(s)	32, 71, 2808, 3318, 3774, 5422, 6090, 7053, 7221
EciI	GGCGGA	1 cut(s)	7402
Ecl136II	GAGCTC	2 cut(s)	1525, 6659
Eco130I	CCWWGG	6 cut(s)	237, 3842, 4530, 4752, 5326, 6924
Eco147I	AGGCCT	2 cut(s)	2751, 7246
Eco24I	GRGCYC	4 cut(s)	188, 1527, 5505, 6661
Eco31I	GGTCTC	2 cut(s)	5441, 6192
Eco47I	GGWCC	6 cut(s)	234, 3796, 4094, 4349, 5175, 7010
Eco53kI	GAGCTC	2 cut(s)	1525, 6659
Eco57I	CTGAAG	8 cut(s)	1307, 1689, 2366, 3147, 3260, 4448, 5544, 6060
Eco72I	CACGTG	1 cut(s)	7402
Eco81I	CCTNAGG	1 cut(s)	1855
Eco88I	CYCGRG	1 cut(s)	3111
EcoICRI	GAGCTC	2 cut(s)	1525, 6659
EcoNI	CCTNNNNNAGG	2 cut(s)	791, 4194
EcoO109I	RGGNCCY	5 cut(s)	184, 185, 3796, 4732, 4942
EcoRI	GAATTC	1 cut(s)	1106
EcoRII	CCWGG	7 cut(s)	2133, 2565, 4728, 5743, 6931, 7241, 7284
EcoT14I	CCWWGG	6 cut(s)	237, 3842, 4530, 4752, 5326, 6924
EcoT22I	ATGCAT	2 cut(s)	3791, 4446
EcoT38I	GRGCYC	4 cut(s)	188, 1527, 5505, 6661
ErhI	CCWWGG	6 cut(s)	237, 3842, 4530, 4752, 5326, 6924
FaqI	GGGAC	8 cut(s)	1879, 3667, 3809, 4231, 5485, 6173, 6236, 6842
FauI	CCCGC	2 cut(s)	386, 4461
FauNDI	CATATG	6 cut(s)	1518, 1545, 2403, 3905, 4746, 6313
FblI	GTMKAC	2 cut(s)	3600, 4688
FriOI	GRGCYC	4 cut(s)	188, 1527, 5505, 6661
FspAI	RTGCGCAY	1 cut(s)	6401
FspI	TGCGCA	1 cut(s)	6401
GlaI	GCGC	4 cut(s)	1088, 1289, 4405, 6401
GsaI	CCCAGC	2 cut(s)	225, 1241
GsuI	CTGGAG	4 cut(s)	4095, 5766, 5862, 6216
HaeII	RGCGCY	1 cut(s)	4407
HapII	CCGG	8 cut(s)	2662, 2870, 3519, 4518, 4672, 5578, 5651, 5663
HgaI	GACGC	1 cut(s)	472
HhaI	GCGC	4 cut(s)	1089, 1290, 4406, 6402
Hin1I	GRCGYC	1 cut(s)	464
Hin6I	GCGC	4 cut(s)	1087, 1288, 4404, 6400
HinP1I	GCGC	4 cut(s)	1087, 1288, 4404, 6400
HincII	GTYRAC	3 cut(s)	2949, 5410, 5979
HindII	GTYRAC	3 cut(s)	2949, 5410, 5979
HindIII	AAGCTT	6 cut(s)	2378, 2834, 3346, 3941, 5624, 6846
HpaI	GTTAAC	1 cut(s)	2949
HpaII	CCGG	8 cut(s)	2662, 2870, 3519, 4518, 4672, 5578, 5651, 5663
Hpy99I	CGWCG	2 cut(s)	234, 2244
Hsp92I	GRCGYC	1 cut(s)	464
HspAI	GCGC	4 cut(s)	1087, 1288, 4404, 6400
KflI	GGGWCCC	1 cut(s)	3796
Kpn2I	TCCGGA	1 cut(s)	3518
KpnI	GGTACC	1 cut(s)	6939
KspAI	GTTAAC	1 cut(s)	2949
LguI	GCTCTTC	2 cut(s)	71, 3774
MfeI	CAATTG	2 cut(s)	1037, 5107
MhlI	GDGCHC	9 cut(s)	188, 1527, 2370, 2701, 2830, 3627, 4711, 5505, 6661
MlyI	GAGTC	8 cut(s)	1760, 1861, 2009, 4160, 5127, 5467, 6074, 6905
MmeI	TCCRAC	4 cut(s)	1382, 2521, 4871, 5753
Mph1103I	ATGCAT	2 cut(s)	3791, 4446
MroI	TCCGGA	1 cut(s)	3518
MroXI	GAANNNNTTC	6 cut(s)	2619, 3124, 3273, 3668, 6078, 7036
MslI	CAYNNNNRTG	5 cut(s)	3594, 4308, 4893, 5868, 6613
MspI	CCGG	8 cut(s)	2662, 2870, 3519, 4518, 4672, 5578, 5651, 5663
MspR9I	CCNGG	9 cut(s)	2135, 2567, 4673, 4730, 5578, 5745, 6933, 7243, 7286
MunI	CAATTG	2 cut(s)	1037, 5107
Mva1269I	GAATGC	2 cut(s)	2230, 2596
MvaI	CCWGG	7 cut(s)	2135, 2567, 4730, 5745, 6933, 7243, 7286
MvnI	CGCG	3 cut(s)	108, 1087, 4287
NciI	CCSGG	2 cut(s)	4673, 5578
NcoI	CCATGG	2 cut(s)	3842, 5326
NdeI	CATATG	6 cut(s)	1518, 1545, 2403, 3905, 4746, 6313
NmeAIII	GCCGAG	3 cut(s)	1849, 1856, 6487
NsbI	TGCGCA	1 cut(s)	6401
NsiI	ATGCAT	2 cut(s)	3791, 4446
NspI	RCATGY	9 cut(s)	1392, 1478, 3228, 4444, 4595, 5711, 5845, 6439, 6868
OliI	CACNNNNGTG	1 cut(s)	5868
PaeI	GCATGC	1 cut(s)	6439
PaeR7I	CTCGAG	1 cut(s)	3111
PagI	TCATGA	2 cut(s)	721, 4408
PceI	AGGCCT	2 cut(s)	2751, 7246
PciI	ACATGT	4 cut(s)	1388, 1474, 5841, 6864
PciSI	GCTCTTC	2 cut(s)	71, 3774
PcsI	WCGNNNNNNNCGW	1 cut(s)	4486
PctI	GAATGC	2 cut(s)	2230, 2596
PdmI	GAANNNNTTC	6 cut(s)	2619, 3124, 3273, 3668, 6078, 7036
PflMI	CCANNNNNTGG	1 cut(s)	6668
PfoI	TCCNGGA	1 cut(s)	5743
PleI	GAGTC	8 cut(s)	1759, 1861, 2008, 4159, 5127, 5467, 6073, 6904
PmaCI	CACGTG	1 cut(s)	7402
PmlI	CACGTG	1 cut(s)	7402
PpsI	GAGTC	8 cut(s)	1759, 1861, 2008, 4159, 5127, 5467, 6073, 6904
Ppu21I	YACGTR	3 cut(s)	2678, 3494, 7402
PpuMI	RGGWCCY	1 cut(s)	3796
PscI	ACATGT	4 cut(s)	1388, 1474, 5841, 6864
PsiI	TTATAA	5 cut(s)	1262, 1994, 3195, 3392, 4437
Psp124BI	GAGCTC	2 cut(s)	1527, 6661
Psp5II	RGGWCCY	1 cut(s)	3796
Psp6I	CCWGG	7 cut(s)	2133, 2565, 4728, 5743, 6931, 7241, 7284
PspCI	CACGTG	1 cut(s)	7402
PspFI	CCCAGC	2 cut(s)	221, 1237
PspGI	CCWGG	7 cut(s)	2133, 2565, 4728, 5743, 6931, 7241, 7284
PspOMI	GGGCCC	1 cut(s)	184
PspPPI	RGGWCCY	1 cut(s)	3796
PsrI	GAACNNNNNNTAC	6 cut(s)	2054, 2086, 4827, 4859, 7080, 7112
PstI	CTGCAG	3 cut(s)	5344, 5407, 6961
PstNI	CAGNNNCTG	3 cut(s)	1406, 2048, 6965
RseI	CAYNNNNRTG	5 cut(s)	3594, 4308, 4893, 5868, 6613
SacI	GAGCTC	2 cut(s)	1527, 6661
SapI	GCTCTTC	2 cut(s)	71, 3774
ScaI	AGTACT	2 cut(s)	2072, 2607
SchI	GAGTC	8 cut(s)	1760, 1861, 2009, 4160, 5127, 5467, 6074, 6905
ScrFI	CCNGG	9 cut(s)	2135, 2567, 4673, 4730, 5578, 5745, 6933, 7243, 7286
SduI	GDGCHC	9 cut(s)	188, 1527, 2370, 2701, 2830, 3627, 4711, 5505, 6661
SfcI	CTRYAG	7 cut(s)	548, 636, 852, 3262, 5340, 5403, 6957
Sfr274I	CTCGAG	1 cut(s)	3111
SinI	GGWCC	6 cut(s)	234, 3796, 4094, 4349, 5175, 7010
SlaI	CTCGAG	1 cut(s)	3111
SmiI	ATTTAAAT	1 cut(s)	5643
SmiMI	CAYNNNNRTG	5 cut(s)	3594, 4308, 4893, 5868, 6613
SmlI	CTYRAG	9 cut(s)	1013, 3111, 3582, 4033, 5000, 5255, 6122, 6713, 7337
SmoI	CTYRAG	9 cut(s)	1013, 3111, 3582, 4033, 5000, 5255, 6122, 6713, 7337
SpeI	ACTAGT	2 cut(s)	2855, 4781
SphI	GCATGC	1 cut(s)	6439
SseBI	AGGCCT	2 cut(s)	2751, 7246
SsiI	CCGC	7 cut(s)	5, 106, 379, 4313, 4468, 5851, 7387
SspI	AATATT	6 cut(s)	418, 1375, 2580, 3457, 3913, 5152
SstI	GAGCTC	2 cut(s)	1527, 6661
StuI	AGGCCT	2 cut(s)	2751, 7246
StyD4I	CCNGG	9 cut(s)	2133, 2565, 4671, 4728, 5576, 5743, 6931, 7241, 7284
StyI	CCWWGG	6 cut(s)	237, 3842, 4530, 4752, 5326, 6924
SwaI	ATTTAAAT	1 cut(s)	5643
TaqI	TCGA	8 cut(s)	370, 1301, 1984, 2350, 3112, 4667, 6495, 7249
TaqII	GACCGA	2 cut(s)	222, 6513
TauI	GCSGC	2 cut(s)	8, 108
TspGWI	ACGGA	6 cut(s)	1135, 2956, 3921, 4550, 5368, 7100
Van91I	CCANNNNNTGG	1 cut(s)	6668
VneI	GTGCAC	3 cut(s)	2366, 3623, 4707
VpaK11BI	GGWCC	6 cut(s)	234, 3796, 4094, 4349, 5175, 7010
XagI	CCTNNNNNAGG	2 cut(s)	791, 4194
XbaI	TCTAGA	2 cut(s)	1636, 7316
XceI	RCATGY	9 cut(s)	1392, 1478, 3228, 4444, 4595, 5711, 5845, 6439, 6868
XcmI	CCANNNNNNNNNTGG	5 cut(s)	283, 448, 2727, 2979, 3989
XhoI	CTCGAG	1 cut(s)	3111
XmiI	GTMKAC	2 cut(s)	3600, 4688
XmnI	GAANNNNTTC	6 cut(s)	2619, 3124, 3273, 3668, 6078, 7036
ZrmI	AGTACT	2 cut(s)	2072, 2607
Zsp2I	ATGCAT	2 cut(s)	3791, 4446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.