MD08G1208300.v1.1

pollen tube development

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
27061281 .. 27067955
6675 bp
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UTR
Exon/CDS
Intron
MD08G1208300.v1.1.491

Sequence Viewer

Length: 1536 bp
ATGATTGTTGATGGTAAATCTTTTGCCGAGGCTGAGATCAATGACATGATTTATGACTTTGACCGGGATTACAAGGATGTTGGTGTTGCTCAGTTTACAACAAAAAATTTTGTTGTCAGAAACTGCCTGCCAAATGCCAAGTCAGATATGCTATCAGCATGGAATCCTCCTACTGAATGGGAAAAGAAAGTTTTGCTTCGCGTGGATGCAAAGCAAGGAGCTCCCAAGGATGGAAATTCTTCTCTTGAACGTTTTCAGAGATATGCGGAGGAGAGTTCCTTGGGAGAAGGTAGAGATCTATCCTCTCAAGATTCATTTAACCGAGGCAATGTACAGAATGATGTGGGGATATTTATTCCCAGAAGAAGAACAAGATTCACAATGACGGCAGTTTGGAAGGTTTCAACAACTGCTGGTGCAAAACGTGTGAAGAAAGGCTCATTAGTCCCAGAGATTTCTGCATTAAGCGGTCAAACAAATAAAGAGTCTGAGGCCTCATCCAAAGCAAGTCCCTCTGCCCCTGCTACCAGTCAATCCTCCGTTCATGCAGATCCTGTGCAAGAATCAAAATTGCAAAACCTAAAGACAACAGTTGGTGATCATGGGAAGACACTGGCAGAATCAGTTGCTACAGAACTTGTCTTACAGAGCATTACTGGGCCACTTGGTTCTATTGAACTAGATGAGTCCTCGAAGAATAAATTGAAAGACCCCAAAGCTGTCAAATCTGGTAGGTCATCCCATGAAGAAAAGAAGGTAACAAAATCACAAGAAGAGAAAAGATTTAGGCCACGAAAGATGCAGTTTCACAATATTAAGATAAGCCAGGTTGAGCTATGTGTTACTTACGAAGGATCTAGATTTGTTGTAAATGATCTTAAGTTGCTGATGGATACATTTCACCGTGTTGAGTTCACCGGCACTTGGCGGAGACTCTTTTCGCGGGTTAAGAAGCATATCATTTGGGGAGTCTTGAAGTCTGATGGGAATGCAGGTCTGCATTTATACCTTTTAATATTGGGAGGTAAGAAGTTCAAGGATAAGGCTAATAGTCAGAGGGAACCCAGTGGATCGGGTGTTCCCGATAGTGACCTTAATTTCAGTGACAATGAAGGTCAGCCAGAAGAACCTGACCAGAATCCTATACCGTTTCTCAACTGTCCAAGTGACGGAGCAGGTGATGGATTTGTCACCTCCATCAGAGGCCTTTTCAATACTCAACGTCGCAAGGCCAAGGCATTCGTACTGCGAACCATGAGGGGTGAAGCAGAGAATGATTTCCAAGGAGATTGGAGTGAAAGTGATGCAGAGTTCTCTCCATTTGCTAGGCAGCTCACAATAACGAAAGCTAAGAGACTTATCCGGCGGCACACTAAAAAATTCCGTTCAAGAAAAGGTTCATCCTCACAACAGAGAGATTCACTCGCATCCTCGCCAAGGGAGACCACTGCATTCGATAGCCATTCTTTGAGTGAATCCTCGCCCTACGAAGATTTTAATGAGGGAAACATTTTGTCCTCCAGAGAGGTTCCTTGA

Protein Analysis

512

Amino Acids

57.03

Weight (kDa)

9.29

Isoelectric Point (pI)

50.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hobbit PF10344 1 - 86 3.3e-27 Hobbit/FMP27/BTLP2 family
Hobbit PF10344 131 - 432 5.7e-46 Hobbit/FMP27/BTLP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1166
Acc36I ACCTGC 2 cut(s) 983, 1166
AccII CGCG 2 cut(s) 201, 943
AciI CCGC 5 cut(s) 266, 468, 928, 943, 1366
AclI AACGTT 1 cut(s) 250
AclWI GGATC 3 cut(s) 545, 862, 1078
AcsI RAATTY 3 cut(s) 106, 235, 1379
AfaI GTAC 2 cut(s) 333, 1245
AfiI CCNNNNNNNGG 4 cut(s) 230, 924, 1169, 1437
AflII CTTAAG 1 cut(s) 878
AflIII ACRYGT 1 cut(s) 424
AgsI TTSAA 8 cut(s) 248, 405, 677, 706, 976, 1036, 1213, 1389
AjnI CCWGG 1 cut(s) 825
AloI GAACNNNNNNTCC 2 cut(s) 1062, 1094
AluBI AGCT 5 cut(s) 221, 719, 835, 1333, 1349
AluI AGCT 5 cut(s) 221, 719, 835, 1333, 1349
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 3 cut(s) 925, 1348, 1436
AlwI GGATC 3 cut(s) 545, 862, 1078
AlwNI CAGNNNCTG 2 cut(s) 123, 554
AoxI GGCC 5 cut(s) 492, 659, 788, 1204, 1230
ApeKI GCWGC 1 cut(s) 1330
ApoI RAATTY 3 cut(s) 106, 235, 1379
ArsI GACNNNNNNTTYG 4 cut(s) 125, 157, 470, 502
Asp700I GAANNNNTTC 4 cut(s) 238, 252, 1277, 1396
AspS9I GGNCC 1 cut(s) 659
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 6 cut(s) 608, 893, 907, 1183, 1190, 1274
BanII GRGCYC 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 614
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 1342
BccI CCATC 6 cut(s) 5, 224, 883, 977, 1175, 1205
BceAI ACGGC 1 cut(s) 402
BciT130I CCWGG 1 cut(s) 827
BciVI GTATCC 1 cut(s) 886
BclI TGATCA 1 cut(s) 598
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 3 cut(s) 925, 1348, 1436
BfaI CTAG 3 cut(s) 680, 858, 1326
BfmI CTRYAG 1 cut(s) 630
BfrI CTTAAG 1 cut(s) 878
BfuAI ACCTGC 2 cut(s) 983, 1166
BfuI GTATCC 1 cut(s) 886
BglII AGATCT 1 cut(s) 295
BisI GCNGC 2 cut(s) 1331, 1367
BlsI GCNGC 2 cut(s) 1332, 1368
Bme1390I CCNGG 2 cut(s) 65, 827
BmgT120I GGNCC 1 cut(s) 659
BmiI GGNNCC 2 cut(s) 1062, 1530
BmrFI CCNGG 2 cut(s) 65, 827
BmrI ACTGGG 2 cut(s) 666, 1059
BmsI GCATC 4 cut(s) 196, 789, 1294, 1436
BmuI ACTGGG 2 cut(s) 666, 1059
BpiI GAAGAC 1 cut(s) 614
BplI GAGNNNNNCTC 2 cut(s) 1407, 1439
BpmI CTGGAG 1 cut(s) 1504
BpuEI CTTGAG 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 1436
BsaJI CCNNGG 7 cut(s) 27, 225, 279, 322, 1233, 1282, 1436
BsaXI ACNNNNNCTCC 2 cut(s) 1285, 1315
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 924, 1169, 1437
Bse118I RCCGGY 1 cut(s) 917
Bse1I ACTGG 4 cut(s) 528, 618, 661, 1065
Bse3DI GCAATG 1 cut(s) 334
BseBI CCWGG 1 cut(s) 827
BseDI CCNNGG 7 cut(s) 27, 225, 279, 322, 1233, 1282, 1436
BseGI GGATG 7 cut(s) 82, 211, 235, 497, 737, 1400, 1427
BseLI CCNNNNNNNGG 4 cut(s) 230, 924, 1169, 1437
BseMI GCAATG 1 cut(s) 334
BseMII CTCAG 3 cut(s) 24, 104, 480
BseNI ACTGG 4 cut(s) 528, 618, 661, 1065
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 1342
Bsh1236I CGCG 2 cut(s) 201, 943
BshFI GGCC 5 cut(s) 494, 661, 790, 1206, 1232
BsiHKAI GWGCWC 1 cut(s) 223
BsiSI CCGG 3 cut(s) 64, 918, 1363
BslFI GGGAC 2 cut(s) 431, 495
BslI CCNNNNNNNGG 4 cut(s) 230, 924, 1169, 1437
BsmAI GTCTC 3 cut(s) 925, 1348, 1436
BsmFI GGGAC 2 cut(s) 431, 495
BsmI GAATGC 3 cut(s) 994, 1238, 1451
BsnI GGCC 5 cut(s) 494, 661, 790, 1206, 1232
Bso31I GGTCTC 1 cut(s) 1436
Bsp1286I GDGCHC 1 cut(s) 223
Bsp1407I TGTACA 1 cut(s) 331
Bsp143I GATC 7 cut(s) 36, 295, 550, 598, 854, 874, 1070
BspACI CCGC 5 cut(s) 266, 468, 928, 943, 1366
BspANI GGCC 5 cut(s) 494, 661, 790, 1206, 1232
BspCNI CTCAG 3 cut(s) 25, 103, 481
BspFNI CGCG 2 cut(s) 201, 943
BspLI GGNNCC 2 cut(s) 1062, 1530
BspMI ACCTGC 2 cut(s) 983, 1166
BspPI GGATC 3 cut(s) 545, 862, 1078
BspTI CTTAAG 1 cut(s) 878
BspTNI GGTCTC 1 cut(s) 1436
BsrDI GCAATG 1 cut(s) 334
BsrFI RCCGGY 1 cut(s) 917
BsrGI TGTACA 1 cut(s) 331
BsrI ACTGG 4 cut(s) 528, 618, 661, 1065
BssAI RCCGGY 1 cut(s) 917
BssECI CCNNGG 7 cut(s) 27, 225, 279, 322, 1233, 1282, 1436
BssMI GATC 7 cut(s) 36, 295, 550, 598, 854, 874, 1070
BssT1I CCWWGG 5 cut(s) 225, 279, 1233, 1282, 1436
Bst2UI CCWGG 1 cut(s) 827
Bst4CI ACNGT 4 cut(s) 592, 905, 1149, 1160
Bst6I CTCTTC 1 cut(s) 768
BstAFI CTTAAG 1 cut(s) 878
BstAUI TGTACA 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 4 cut(s) 33, 90, 489, 1350
BstENI CCTNNNNNAGG 1 cut(s) 1435
BstF5I GGATG 7 cut(s) 82, 211, 235, 497, 737, 1400, 1427
BstFNI CGCG 2 cut(s) 201, 943
BstKTI GATC 7 cut(s) 39, 298, 553, 601, 857, 877, 1073
BstMAI GTCTC 3 cut(s) 925, 1348, 1436
BstMBI GATC 7 cut(s) 36, 295, 550, 598, 854, 874, 1070
BstNI CCWGG 1 cut(s) 827
BstSCI CCNGG 2 cut(s) 63, 825
BstSFI CTRYAG 1 cut(s) 630
BstUI CGCG 2 cut(s) 201, 943
BstV1I GCAGC 1 cut(s) 1342
BstV2I GAAGAC 1 cut(s) 614
BstX2I RGATCY 3 cut(s) 295, 550, 854
BstYI RGATCY 3 cut(s) 295, 550, 854
BsuI GTATCC 1 cut(s) 886
BsuRI GGCC 5 cut(s) 494, 661, 790, 1206, 1232
BtsCI GGATG 7 cut(s) 82, 211, 235, 497, 737, 1400, 1427
BtsI GCAGTG 1 cut(s) 1446
BtsIMutI CAGTG 4 cut(s) 611, 1072, 1108, 1446
BveI ACCTGC 2 cut(s) 983, 1166
Cac8I GCNNGC 1 cut(s) 128
CaiI CAGNNNCTG 2 cut(s) 123, 554
Cfr10I RCCGGY 1 cut(s) 917
Cfr13I GGNCC 1 cut(s) 659
Csp6I GTAC 2 cut(s) 332, 1244
CviAII CATG 6 cut(s) 46, 159, 545, 602, 743, 1255
CviQI GTAC 2 cut(s) 332, 1244
DdeI CTNAG 4 cut(s) 33, 90, 489, 1350
DpnI GATC 7 cut(s) 38, 297, 552, 600, 856, 876, 1072
DpnII GATC 7 cut(s) 36, 295, 550, 598, 854, 874, 1070
Eam1104I CTCTTC 1 cut(s) 768
EarI CTCTTC 1 cut(s) 768
EciI GGCGGA 1 cut(s) 943
Ecl136II GAGCTC 1 cut(s) 221
Eco130I CCWWGG 5 cut(s) 225, 279, 1233, 1282, 1436
Eco147I AGGCCT 2 cut(s) 494, 1206
Eco24I GRGCYC 1 cut(s) 223
Eco31I GGTCTC 1 cut(s) 1436
Eco53kI GAGCTC 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 221
EcoNI CCTNNNNNAGG 1 cut(s) 1435
EcoRII CCWGG 1 cut(s) 825
EcoT14I CCWWGG 5 cut(s) 225, 279, 1233, 1282, 1436
EcoT38I GRGCYC 1 cut(s) 223
ErhI CCWWGG 5 cut(s) 225, 279, 1233, 1282, 1436
FaeI CATG 6 cut(s) 49, 162, 548, 605, 746, 1258
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FaqI GGGAC 2 cut(s) 431, 495
FatI CATG 6 cut(s) 45, 158, 544, 601, 742, 1254
FauI CCCGC 1 cut(s) 936
FbaI TGATCA 1 cut(s) 598
Fnu4HI GCNGC 2 cut(s) 1331, 1367
FokI GGATG 7 cut(s) 89, 218, 242, 484, 724, 1387, 1414
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 2 cut(s) 1331, 1367
FspBI CTAG 3 cut(s) 680, 858, 1326
GluI GCNGC 2 cut(s) 1331, 1367
GsuI CTGGAG 1 cut(s) 1504
HaeIII GGCC 5 cut(s) 494, 661, 790, 1206, 1232
HapII CCGG 3 cut(s) 64, 918, 1363
Hin1II CATG 6 cut(s) 49, 162, 548, 605, 746, 1258
HpaII CCGG 3 cut(s) 64, 918, 1363
HphI GGTGA 6 cut(s) 608, 893, 907, 1183, 1190, 1274
Hpy166II GTNNAC 2 cut(s) 96, 915
Hpy188I TCNGA 7 cut(s) 119, 145, 258, 490, 982, 1056, 1202
Hpy188III TCNNGA 7 cut(s) 245, 308, 858, 973, 1082, 1389, 1521
Hpy8I GTNNAC 2 cut(s) 96, 915
Hpy99I CGWCG 1 cut(s) 1227
HpyAV CCTTC 5 cut(s) 281, 391, 748, 845, 1106
HpyCH4III ACNGT 4 cut(s) 592, 905, 1149, 1160
HpyCH4IV ACGT 3 cut(s) 250, 424, 1222
HpyF3I CTNAG 4 cut(s) 33, 90, 489, 1350
HpySE526I ACGT 3 cut(s) 250, 424, 1222
Hsp92II CATG 6 cut(s) 49, 162, 548, 605, 746, 1258
Ksp22I TGATCA 1 cut(s) 598
Kzo9I GATC 7 cut(s) 36, 295, 550, 598, 854, 874, 1070
LmnI GCTCC 3 cut(s) 218, 226, 1172
Lsp1109I GCAGC 1 cut(s) 1342
LweI GCATC 4 cut(s) 196, 789, 1294, 1436
MaeI CTAG 3 cut(s) 680, 858, 1326
MaeII ACGT 3 cut(s) 250, 424, 1222
MaeIII GTNAC 6 cut(s) 757, 841, 1088, 1103, 1166, 1189
MalI GATC 7 cut(s) 38, 297, 552, 600, 856, 876, 1072
MboI GATC 7 cut(s) 36, 295, 550, 598, 854, 874, 1070
MflI RGATCY 3 cut(s) 295, 550, 854
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 6 cut(s) 106, 235, 569, 701, 1096, 1379
MlyI GAGTC 4 cut(s) 494, 695, 927, 978
MroXI GAANNNNTTC 4 cut(s) 238, 252, 1277, 1396
MseI TTAA 8 cut(s) 318, 464, 816, 879, 948, 1013, 1095, 1497
MspCI CTTAAG 1 cut(s) 878
MspI CCGG 3 cut(s) 64, 918, 1363
MspR9I CCNGG 2 cut(s) 65, 827
Mva1269I GAATGC 3 cut(s) 994, 1238, 1451
MvaI CCWGG 1 cut(s) 827
MvnI CGCG 2 cut(s) 201, 943
NciI CCSGG 1 cut(s) 65
NdeII GATC 7 cut(s) 36, 295, 550, 598, 854, 874, 1070
NlaIII CATG 6 cut(s) 49, 162, 548, 605, 746, 1258
NlaIV GGNNCC 2 cut(s) 1062, 1530
NmeAIII GCCGAG 1 cut(s) 52
NmuCI GTSAC 4 cut(s) 1088, 1103, 1166, 1189
PaqCI CACCTGC 1 cut(s) 1166
PceI AGGCCT 2 cut(s) 494, 1206
PctI GAATGC 3 cut(s) 994, 1238, 1451
PdmI GAANNNNTTC 4 cut(s) 238, 252, 1277, 1396
PfeI GAWTC 8 cut(s) 163, 311, 375, 563, 620, 1138, 1418, 1475
PkrI GCNGC 2 cut(s) 1332, 1368
PleI GAGTC 4 cut(s) 493, 694, 927, 977
PpsI GAGTC 4 cut(s) 493, 694, 927, 977
Psp124BI GAGCTC 1 cut(s) 223
Psp1406I AACGTT 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 825
PspGI CCWGG 1 cut(s) 825
PspN4I GGNNCC 2 cut(s) 1062, 1530
PspPI GGNCC 1 cut(s) 659
PsrI GAACNNNNNNTAC 2 cut(s) 627, 659
PstNI CAGNNNCTG 2 cut(s) 123, 554
PsuI RGATCY 3 cut(s) 295, 550, 854
RsaI GTAC 2 cut(s) 333, 1245
RsaNI GTAC 2 cut(s) 332, 1244
SacI GAGCTC 1 cut(s) 223
SaqAI TTAA 8 cut(s) 318, 464, 816, 879, 948, 1013, 1095, 1497
SatI GCNGC 2 cut(s) 1331, 1367
Sau3AI GATC 7 cut(s) 36, 295, 550, 598, 854, 874, 1070
Sau96I GGNCC 1 cut(s) 659
SchI GAGTC 4 cut(s) 494, 695, 927, 978
ScrFI CCNGG 2 cut(s) 65, 827
SduI GDGCHC 1 cut(s) 223
SfaNI GCATC 4 cut(s) 196, 789, 1294, 1436
SfcI CTRYAG 1 cut(s) 630
SmlI CTYRAG 2 cut(s) 306, 878
SmoI CTYRAG 2 cut(s) 306, 878
Sse9I AATT 6 cut(s) 106, 235, 569, 701, 1096, 1379
SseBI AGGCCT 2 cut(s) 494, 1206
SsiI CCGC 5 cut(s) 266, 468, 928, 943, 1366
SspI AATATT 2 cut(s) 814, 1017
SspMI CTAG 3 cut(s) 680, 858, 1326
SstI GAGCTC 1 cut(s) 223
StuI AGGCCT 2 cut(s) 494, 1206
StyD4I CCNGG 2 cut(s) 63, 825
StyI CCWWGG 5 cut(s) 225, 279, 1233, 1282, 1436
TaaI ACNGT 4 cut(s) 592, 905, 1149, 1160
TaiI ACGT 3 cut(s) 253, 427, 1225
TaqI TCGA 2 cut(s) 692, 1455
TasI AATT 6 cut(s) 106, 235, 569, 701, 1096, 1379
TatI WGTACW 1 cut(s) 331
TauI GCSGC 1 cut(s) 1369
TfiI GAWTC 8 cut(s) 163, 311, 375, 563, 620, 1138, 1418, 1475
Tru1I TTAA 8 cut(s) 318, 464, 816, 879, 948, 1013, 1095, 1497
Tru9I TTAA 8 cut(s) 318, 464, 816, 879, 948, 1013, 1095, 1497
TscAI CASTG 4 cut(s) 618, 1072, 1108, 1453
TseFI GTSAC 4 cut(s) 1088, 1103, 1166, 1189
TseI GCWGC 1 cut(s) 1330
Tsp45I GTSAC 4 cut(s) 1088, 1103, 1166, 1189
TspDTI ATGAA 5 cut(s) 303, 533, 759, 1125, 1389
TspGWI ACGGA 3 cut(s) 529, 1185, 1373
TspRI CASTG 4 cut(s) 618, 1072, 1108, 1453
Vha464I CTTAAG 1 cut(s) 878
XagI CCTNNNNNAGG 1 cut(s) 1435
XapI RAATTY 3 cut(s) 106, 235, 1379
XbaI TCTAGA 1 cut(s) 857
XmnI GAANNNNTTC 4 cut(s) 238, 252, 1277, 1396
XspI CTAG 3 cut(s) 680, 858, 1326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.