Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8243721.1

Orthogroup ID

OG0006211

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 638

Gene Structure 638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8243721.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 493 bp

ctgcaggaatcaaaattgcaaagtaaagcactcattgcgagtggtccaaatcctgagttaagaagaacatcttcctttgacagatcatgggaagagactgttgcagaatcagttgctactgaacttgtcttacagagcattagtgggcctcttgggcctattgaacaagatgaatcctctaagaataaattgaaagatcccaaagctatcaaatctggcaggtcatcgcatgaagaaaagaaggtacaaaagtcacaagaagagaaaaaatctgccaggcctcgaaagatgatggagtttcacaatatcaagataagccaggttgagctatgtgttacctatgaaggatctagatttgtggtaaatgatctcaagttgctgatggatacatttcaccgtgttgagtttactggtacttggcggagacttttttcacgtgttaagaagcacatcatttggggagtcctgaagtctgtaactggaatgcaggtct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0005575 GO:0005623 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0009267 GO:0009605 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010015 GO:0010053 GO:0010054 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0016036 GO:0016043 GO:0016049 GO:0021700 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030154 GO:0030307 GO:0030427 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032989 GO:0033554 GO:0035618 GO:0035619 GO:0035838 GO:0040007 GO:0040008 GO:0042594 GO:0042995 GO:0044463 GO:0044464 GO:0044706 GO:0045927 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051286 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0070297 GO:0070298 GO:0071496 GO:0071695 GO:0071840 GO:0080147 GO:0090404 GO:0090406 GO:0090558 GO:0090627 GO:0099402 GO:0120025 GO:0120038 GO:1902531 GO:1902532 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Apt1 Fmp27_GFWDK

Protein Analysis

164

Amino Acids

18.74

Weight (kDa)

9.68

Isoelectric Point (pI)

61.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58250 AT1G58250 AT5G49680
fragaria_vesca	FvH4_5g34390
malus_domestica	MD08G1201600.v1.1 MD08G1201800.v1.1 MD08G1202400.v1.1 MD08G1208300.v1.1 MD15G1388100.v1.1
prunus_persica	Prupe.1G535700_v2.0.a1 Prupe.1G535700_v2.0.a1 Prupe.1G535700_v2.0.a1 Prupe.1G535700_v2.0.a1
pyrus_communis	pycom15g34840
rosa_chinensis	RchiOBHm_Chr7g0235041
rosa_laevigata	RLG00000001185
rosa_multiflora	Rmu_co8243721.1_g000001 Rmu_sc0002239.1_g000001 Rmu_sc0013687.1_g000001 Rmu_sc0015410.1_g000007
rosa_roxburghii	Rroxscaffold_3G00226360
rosa_rugosa	Rorug07G0287300
rosa_samantha	Rh7AG442100 Rh7BG414600 Rh7CG463100 Rh7DG431700
rosa_wichuraiana	Rw7G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	210, 478
AciI	CCGC	1 cut(s)	421
AclWI	GGATC	2 cut(s)	191, 355
AcuI	CTGAAG	1 cut(s)	488
AcvI	CACGTG	1 cut(s)	437
AfaI	GTAC	2 cut(s)	246, 415
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	164, 193
AjnI	CCWGG	2 cut(s)	275, 318
AluBI	AGCT	2 cut(s)	206, 328
AluI	AGCT	2 cut(s)	206, 328
Alw26I	GTCTC	2 cut(s)	89, 418
AlwI	GGATC	2 cut(s)	191, 355
AoxI	GGCC	3 cut(s)	146, 155, 278
Asp700I	GAANNNNTTC	1 cut(s)	70
AspS9I	GGNCC	3 cut(s)	44, 146, 155
AsuHPI	GGTGA	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	44
BaeI	ACNNNNGTAYC	2 cut(s)	236, 269
BbrPI	CACGTG	1 cut(s)	437
BccI	CCATC	2 cut(s)	286, 376
BciT130I	CCWGG	2 cut(s)	277, 320
BciVI	GTATCC	1 cut(s)	379
BcoDI	GTCTC	2 cut(s)	89, 418
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	2
BfuAI	ACCTGC	2 cut(s)	210, 478
BfuI	GTATCC	1 cut(s)	379
BglI	GCCNNNNNGGC	1 cut(s)	154
Bme1390I	CCNGG	2 cut(s)	277, 320
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	3 cut(s)	44, 146, 155
BmrFI	CCNGG	2 cut(s)	277, 320
BpuEI	CTTGAG	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	437
Bse1I	ACTGG	2 cut(s)	415, 484
Bse3DI	GCAATG	1 cut(s)	33
BseBI	CCWGG	2 cut(s)	277, 320
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	2 cut(s)	415, 484
BshFI	GGCC	3 cut(s)	148, 157, 280
BsmAI	GTCTC	2 cut(s)	89, 418
BsmI	GAATGC	1 cut(s)	489
BsnI	GGCC	3 cut(s)	148, 157, 280
Bsp143I	GATC	4 cut(s)	83, 196, 347, 367
BspACI	CCGC	1 cut(s)	421
BspANI	GGCC	3 cut(s)	148, 157, 280
BspCNI	CTCAG	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	6
BspMI	ACCTGC	2 cut(s)	210, 478
BspPI	GGATC	2 cut(s)	191, 355
BsrDI	GCAATG	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	415, 484
BssMI	GATC	4 cut(s)	83, 196, 347, 367
Bst2UI	CCWGG	2 cut(s)	277, 320
Bst4CI	ACNGT	2 cut(s)	100, 398
Bst6I	CTCTTC	2 cut(s)	87, 255
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstBAI	YACGTR	1 cut(s)	437
BstDEI	CTNAG	2 cut(s)	54, 180
BstKTI	GATC	4 cut(s)	86, 199, 350, 370
BstMAI	GTCTC	2 cut(s)	89, 418
BstMBI	GATC	4 cut(s)	83, 196, 347, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 154
BstNI	CCWGG	2 cut(s)	277, 320
BstSCI	CCNGG	2 cut(s)	275, 318
BstSFI	CTRYAG	1 cut(s)	2
BstX2I	RGATCY	2 cut(s)	196, 347
BstYI	RGATCY	2 cut(s)	196, 347
BsuI	GTATCC	1 cut(s)	379
BsuRI	GGCC	3 cut(s)	148, 157, 280
BtgZI	GCGATG	1 cut(s)	210
BveI	ACCTGC	2 cut(s)	210, 478
Cfr13I	GGNCC	3 cut(s)	44, 146, 155
Csp6I	GTAC	2 cut(s)	245, 414
CviAII	CATG	2 cut(s)	87, 230
CviJI	RGCY	6 cut(s)	148, 157, 206, 280, 318, 328
CviKI_1	RGCY	6 cut(s)	148, 157, 206, 280, 318, 328
CviQI	GTAC	2 cut(s)	245, 414
DdeI	CTNAG	2 cut(s)	54, 180
DpnI	GATC	4 cut(s)	85, 198, 349, 369
DpnII	GATC	4 cut(s)	83, 196, 347, 367
Eam1104I	CTCTTC	2 cut(s)	87, 255
EarI	CTCTTC	2 cut(s)	87, 255
EciI	GGCGGA	1 cut(s)	436
Eco147I	AGGCCT	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	488
Eco72I	CACGTG	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	275, 318
FaeI	CATG	2 cut(s)	90, 233
FaiI	YATR	4 cut(s)	88, 231, 331, 342
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FatI	CATG	2 cut(s)	86, 229
FspBI	CTAG	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	148, 157, 280
Hin1II	CATG	2 cut(s)	90, 233
HinfI	GANTC	4 cut(s)	8, 107, 173, 462
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188III	TCNNGA	4 cut(s)	53, 310, 351, 466
Hpy8I	GTNNAC	1 cut(s)	408
HpyAV	CCTTC	2 cut(s)	235, 338
HpyCH4III	ACNGT	2 cut(s)	100, 398
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	4 cut(s)	4, 19, 104, 487
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 154
HpyF3I	CTNAG	2 cut(s)	54, 180
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	2 cut(s)	90, 233
Kzo9I	GATC	4 cut(s)	83, 196, 347, 367
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	3 cut(s)	252, 334, 475
MalI	GATC	4 cut(s)	85, 198, 349, 369
MboI	GATC	4 cut(s)	83, 196, 347, 367
MboII	GAAGA	5 cut(s)	63, 75, 104, 245, 272
MflI	RGATCY	2 cut(s)	196, 347
MluCI	AATT	2 cut(s)	14, 188
MlyI	GAGTC	1 cut(s)	471
MnlI	CCTC	3 cut(s)	159, 187, 291
MroXI	GAANNNNTTC	1 cut(s)	70
MseI	TTAA	2 cut(s)	59, 441
MspR9I	CCNGG	2 cut(s)	277, 320
Mva1269I	GAATGC	1 cut(s)	489
MvaI	CCWGG	2 cut(s)	277, 320
MwoI	GCNNNNNNNGC	2 cut(s)	35, 154
NdeII	GATC	4 cut(s)	83, 196, 347, 367
NlaIII	CATG	2 cut(s)	90, 233
NmuCI	GTSAC	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	280
PctI	GAATGC	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	70
PfeI	GAWTC	3 cut(s)	8, 107, 173
PleI	GAGTC	1 cut(s)	470
PmaCI	CACGTG	1 cut(s)	437
PmlI	CACGTG	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	470
Ppu21I	YACGTR	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	275, 318
PspCI	CACGTG	1 cut(s)	437
PspGI	CCWGG	2 cut(s)	275, 318
PspPI	GGNCC	3 cut(s)	44, 146, 155
PsrI	GAACNNNNNNTAC	2 cut(s)	114, 146
PstI	CTGCAG	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	196, 347
RsaI	GTAC	2 cut(s)	246, 415
RsaNI	GTAC	2 cut(s)	245, 414
SaqAI	TTAA	2 cut(s)	59, 441
Sau3AI	GATC	4 cut(s)	83, 196, 347, 367
Sau96I	GGNCC	3 cut(s)	44, 146, 155
SchI	GAGTC	1 cut(s)	471
ScrFI	CCNGG	2 cut(s)	277, 320
SetI	ASST	8 cut(s)	208, 224, 246, 324, 330, 341, 439, 492
SfcI	CTRYAG	1 cut(s)	2
SfiI	GGCCNNNNNGGCC	1 cut(s)	154
SinI	GGWCC	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	2 cut(s)	14, 188
SseBI	AGGCCT	1 cut(s)	280
SsiI	CCGC	1 cut(s)	421
SspMI	CTAG	1 cut(s)	351
StuI	AGGCCT	1 cut(s)	280
StyD4I	CCNGG	2 cut(s)	275, 318
TaaI	ACNGT	2 cut(s)	100, 398
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	1 cut(s)	283
TasI	AATT	2 cut(s)	14, 188
TfiI	GAWTC	3 cut(s)	8, 107, 173
Tru1I	TTAA	2 cut(s)	59, 441
Tru9I	TTAA	2 cut(s)	59, 441
TseFI	GTSAC	1 cut(s)	252
Tsp45I	GTSAC	1 cut(s)	252
TspDTI	ATGAA	3 cut(s)	186, 246, 357
VpaK11BI	GGWCC	1 cut(s)	44
XbaI	TCTAGA	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	70
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.