Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006211

Physical Location & Seq

Genomic Coordinates Reverse (-)

26195589 .. 26196451

Gene Structure 863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1202400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAACTTGGTGAGCTAAATTTGCACATGGCAGATGAATACCAAGAATGCTTGAAAGAGAGCCTTTTTGGTGTAGAATCAAATTCAGGTTCTATAATTAATGTTGCAAAGGTTAGTCTGGACTGGGGCAAAAAGGACATGGAATCATCCAAAGAAGACAGTCCGAAATGTAAATTGGTTTTATCTGTTGATGTGACTGGTATGGGTGTGTTTTTTACATTCAAGCGTGTTGAGTCGCTTATATCAACTGCAATGTCCTTTCAAGCACTTTTGAAAACTTTGTCTTCTTCTGAAAGAAGAGCATCACAAAGCCGAGGACGTCCGTCCAAACCATCAGGGAAAGGGACTCAGCTGTTGAAGTTAAATCTTGAACGATGTTCTGTGAAATTTTGTGGTGAGGCAGGCTTAGAAAATACTGTTGTTGCAGATCCTAAGCGTGTGAACTATGGATCACAAGGTGGTCAAGTTGTAATAAGTACCTCAGATGATGGCACACCCCGGGTTGCAGACATAATGTCCACAACATCTGATGAACGCAAGAAACTGAGGTATTCCATTTCTCTTGACATCTTCCGTTTAAGTTTGTGCGTGAACAAGGAGAAACAATCCACACAGATTGAACTTGAAAGAGCCAGATCTATCTATCAGGACCACTTGGAGGAAGATAAGCCGGAAGCGAAAGTGGCTTTGTATGACATCCAGAATTCCAAATTTGTACGGCGTTCTGGTGGTCTGAAAGAGGTTGCTGTTTGCTCTCTTTTCAGTGCTACTGATATTACAGTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0005575 GO:0005623 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0009267 GO:0009605 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010015 GO:0010053 GO:0010054 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0016036 GO:0016043 GO:0016049 GO:0021700 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030154 GO:0030307 GO:0030427 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032989 GO:0033554 GO:0035618 GO:0035619 GO:0035838 GO:0040007 GO:0040008 GO:0042594 GO:0042995 GO:0044463 GO:0044464 GO:0044706 GO:0045927 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051286 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0070297 GO:0070298 GO:0071496 GO:0071695 GO:0071840 GO:0080147 GO:0090404 GO:0090406 GO:0090558 GO:0090627 GO:0099402 GO:0120025 GO:0120038 GO:1902531 GO:1902532 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Apt1 Fmp27_GFWDK

Protein Analysis

263

Amino Acids

28.93

Weight (kDa)

7.54

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hobbit	PF10344	1 - 261	9e-58	Hobbit/FMP27/BTLP2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58250 AT1G58250 AT5G49680
fragaria_vesca	FvH4_5g34390
malus_domestica	MD08G1201600.v1.1 MD08G1201800.v1.1 MD08G1202400.v1.1 MD08G1208300.v1.1 MD15G1388100.v1.1
prunus_persica	Prupe.1G535700_v2.0.a1 Prupe.1G535700_v2.0.a1 Prupe.1G535700_v2.0.a1 Prupe.1G535700_v2.0.a1
pyrus_communis	pycom15g34840
rosa_chinensis	RchiOBHm_Chr7g0235041
rosa_laevigata	RLG00000001185
rosa_multiflora	Rmu_co8243721.1_g000001 Rmu_sc0002239.1_g000001 Rmu_sc0013687.1_g000001 Rmu_sc0015410.1_g000007
rosa_roxburghii	Rroxscaffold_3G00226360
rosa_rugosa	Rorug07G0287300
rosa_samantha	Rh7AG442100 Rh7BG414600 Rh7CG463100 Rh7DG431700
rosa_wichuraiana	Rw7G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	322
AclWI	GGATC	2 cut(s)	422, 457
AcsI	RAATTY	5 cut(s)	19, 82, 386, 703, 710
AcyI	GRCGYC	1 cut(s)	319
AdeI	CACNNNGTG	1 cut(s)	458
AfaI	GTAC	2 cut(s)	478, 717
AfiI	CCNNNNNNNGG	1 cut(s)	658
AgsI	TTSAA	8 cut(s)	55, 223, 263, 274, 358, 371, 620, 626
AhdI	GACNNNNNGTC	1 cut(s)	514
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	2 cut(s)	16, 352
AluI	AGCT	2 cut(s)	16, 352
AlwI	GGATC	2 cut(s)	422, 457
Ama87I	CYCGRG	1 cut(s)	498
ApoI	RAATTY	5 cut(s)	19, 82, 386, 703, 710
AseI	ATTAAT	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	649
AsuC2I	CCSGG	2 cut(s)	499, 500
AsuHPI	GGTGA	2 cut(s)	23, 407
AvaI	CYCGRG	1 cut(s)	498
AvaII	GGWCC	1 cut(s)	649
BbsI	GAAGAC	2 cut(s)	162, 276
BccI	CCATC	2 cut(s)	340, 482
BceAI	ACGGC	1 cut(s)	734
BcnI	CCSGG	2 cut(s)	499, 500
BglII	AGATCT	1 cut(s)	635
Bme1390I	CCNGG	2 cut(s)	499, 500
Bme18I	GGWCC	1 cut(s)	649
BmeRI	GACNNNNNGTC	1 cut(s)	514
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	649
BmrFI	CCNGG	2 cut(s)	499, 500
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	1 cut(s)	311
BmuI	ACTGGG	1 cut(s)	133
BoxI	GACNNNNGTC	1 cut(s)	322
BpiI	GAAGAC	2 cut(s)	162, 276
Bpu10I	CCTNAGC	1 cut(s)	432
BpuMI	CCSGG	2 cut(s)	499, 500
BsaHI	GRCGYC	1 cut(s)	319
BsaJI	CCNNGG	3 cut(s)	313, 497, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	658
Bse1I	ACTGG	2 cut(s)	128, 202
Bse3DI	GCAATG	1 cut(s)	258
BseDI	CCNNGG	3 cut(s)	313, 497, 498
BseGI	GGATG	2 cut(s)	146, 696
BseLI	CCNNNNNNNGG	1 cut(s)	658
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	3 cut(s)	362, 495, 536
BseNI	ACTGG	2 cut(s)	128, 202
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	2 cut(s)	499, 671
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	1 cut(s)	658
BsmFI	GGGAC	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	498
Bsp143I	GATC	3 cut(s)	427, 449, 635
BspCNI	CTCAG	3 cut(s)	361, 494, 537
BspPI	GGATC	2 cut(s)	422, 457
BspQI	GCTCTTC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	128, 202
BssECI	CCNNGG	3 cut(s)	313, 497, 498
BssMI	GATC	3 cut(s)	427, 449, 635
BssNI	GRCGYC	1 cut(s)	319
Bst4CI	ACNGT	3 cut(s)	161, 418, 781
Bst6I	CTCTTC	1 cut(s)	292
BstACI	GRCGYC	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	5 cut(s)	348, 406, 432, 481, 545
BstF5I	GGATG	2 cut(s)	146, 696
BstKTI	GATC	3 cut(s)	430, 452, 638
BstMBI	GATC	3 cut(s)	427, 449, 635
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 683
BstPAI	GACNNNNGTC	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	497, 498
BstV2I	GAAGAC	2 cut(s)	162, 276
BstX2I	RGATCY	2 cut(s)	427, 635
BstYI	RGATCY	2 cut(s)	427, 635
BtsCI	GGATG	2 cut(s)	146, 696
BtsIMutI	CAGTG	1 cut(s)	769
Cac8I	GCNNGC	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	649
Cfr9I	CCCGGG	1 cut(s)	498
Csp6I	GTAC	2 cut(s)	477, 716
CspCI	CAANNNNNGTGG	2 cut(s)	598, 633
CviAII	CATG	2 cut(s)	28, 139
CviJI	RGCY	8 cut(s)	16, 63, 312, 352, 405, 632, 670, 686
CviKI_1	RGCY	8 cut(s)	16, 63, 312, 352, 405, 632, 670, 686
CviQI	GTAC	2 cut(s)	477, 716
DdeI	CTNAG	5 cut(s)	348, 406, 432, 481, 545
DpnI	GATC	3 cut(s)	429, 451, 637
DpnII	GATC	3 cut(s)	427, 449, 635
DraIII	CACNNNGTG	1 cut(s)	458
DriI	GACNNNNNGTC	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	292
Eam1105I	GACNNNNNGTC	1 cut(s)	514
EarI	CTCTTC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	649
Eco88I	CYCGRG	1 cut(s)	498
EcoRI	GAATTC	1 cut(s)	703
FaeI	CATG	2 cut(s)	31, 142
FaiI	YATR	8 cut(s)	29, 95, 140, 203, 242, 447, 512, 693
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	2 cut(s)	27, 138
FokI	GGATG	2 cut(s)	133, 683
HapII	CCGG	2 cut(s)	499, 671
Hin1I	GRCGYC	1 cut(s)	319
Hin1II	CATG	2 cut(s)	31, 142
HinfI	GANTC	4 cut(s)	77, 143, 233, 346
HpaII	CCGG	2 cut(s)	499, 671
HphI	GGTGA	2 cut(s)	23, 407
Hpy166II	GTNNAC	3 cut(s)	442, 519, 592
Hpy188I	TCNGA	5 cut(s)	165, 292, 484, 529, 735
Hpy188III	TCNNGA	5 cut(s)	119, 368, 563, 647, 700
Hpy8I	GTNNAC	3 cut(s)	442, 519, 592
HpyCH4III	ACNGT	3 cut(s)	161, 418, 781
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	5 cut(s)	25, 107, 251, 425, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 683
HpyF3I	CTNAG	5 cut(s)	348, 406, 432, 481, 545
HpySE526I	ACGT	1 cut(s)	319
Hsp92I	GRCGYC	1 cut(s)	319
Hsp92II	CATG	2 cut(s)	31, 142
Kzo9I	GATC	3 cut(s)	427, 449, 635
LguI	GCTCTTC	1 cut(s)	292
LweI	GCATC	1 cut(s)	311
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	3 cut(s)	429, 451, 637
MboI	GATC	3 cut(s)	427, 449, 635
MboII	GAAGA	6 cut(s)	167, 276, 279, 309, 562, 674
MflI	RGATCY	2 cut(s)	427, 635
MluCI	AATT	7 cut(s)	19, 82, 96, 173, 386, 703, 710
MlyI	GAGTC	2 cut(s)	242, 340
MnlI	CCTC	6 cut(s)	308, 391, 490, 540, 652, 733
MseI	TTAA	3 cut(s)	99, 362, 578
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	2 cut(s)	499, 671
MspR9I	CCNGG	2 cut(s)	499, 500
Mva1269I	GAATGC	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	22, 683
NciI	CCSGG	2 cut(s)	499, 500
NdeII	GATC	3 cut(s)	427, 449, 635
NlaIII	CATG	2 cut(s)	31, 142
NmeAIII	GCCGAG	1 cut(s)	338
NmuCI	GTSAC	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	292
PctI	GAATGC	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	77, 143
PleI	GAGTC	2 cut(s)	241, 340
PpsI	GAGTC	2 cut(s)	241, 340
PshAI	GACNNNNGTC	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	649
PsuI	RGATCY	2 cut(s)	427, 635
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	2 cut(s)	478, 717
RsaNI	GTAC	2 cut(s)	477, 716
SapI	GCTCTTC	1 cut(s)	292
SaqAI	TTAA	3 cut(s)	99, 362, 578
Sau3AI	GATC	3 cut(s)	427, 449, 635
Sau96I	GGNCC	1 cut(s)	649
SchI	GAGTC	2 cut(s)	242, 340
ScrFI	CCNGG	2 cut(s)	499, 500
SetI	ASST	9 cut(s)	18, 91, 114, 322, 354, 460, 482, 551, 744
SfaNI	GCATC	1 cut(s)	311
SinI	GGWCC	1 cut(s)	649
SmaI	CCCGGG	1 cut(s)	500
Sse9I	AATT	7 cut(s)	19, 82, 96, 173, 386, 703, 710
StyD4I	CCNGG	2 cut(s)	497, 498
TaaI	ACNGT	3 cut(s)	161, 418, 781
TaiI	ACGT	1 cut(s)	322
TasI	AATT	7 cut(s)	19, 82, 96, 173, 386, 703, 710
TfiI	GAWTC	2 cut(s)	77, 143
Tru1I	TTAA	3 cut(s)	99, 362, 578
Tru9I	TTAA	3 cut(s)	99, 362, 578
TscAI	CASTG	1 cut(s)	769
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	51, 546
TspGWI	ACGGA	2 cut(s)	312, 563
TspMI	CCCGGG	1 cut(s)	498
TspRI	CASTG	1 cut(s)	769
VpaK11BI	GGWCC	1 cut(s)	649
VspI	ATTAAT	1 cut(s)	99
XapI	RAATTY	5 cut(s)	19, 82, 386, 703, 710
XmaI	CCCGGG	1 cut(s)	498
ZraI	GACGTC	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.