Rmu_sc0013687.1_g000001

pollen tube development

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013687.1
Physical Location & Seq
Forward (+)
1 .. 7004
7004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013687.1_g000001.1.cds

Sequence Viewer

Length: 1661 bp
acggctggaatgtaaagccagttctgggaggtcgaagtagaagctcttggaagcacatgtctgctggaatgagccaattggccttttgtaatcagatggcagtaggtaatgggaataggctcagatcttcgggaagatttttgggtgggggatcaactcttgaaatactcttctcaaagaatgttaaagctatcaagattctgcctagaaaaagtagtctgtcactgcctgctgaagatgatgaagatgtggaggaggagtcagacgaagtggttcctgatggtgttgaagaggtggagcttgcaagaatagaacttgagaaaaaggaacgggagcagagattgattcttggggacataagaaagttatcccttcactgtgataccactggagacctatatccagaaaaggaaggggactcatggatgataagttgtacaagatctactctggtgcaaggactaaagagagagctggttaattcaaaaaaatctaggaaagctgcgtatgcttcattaagaatggctctacataaggctgctcagctacggctaatggaaaaggagaaaaacaaaagtccatcctatgctatgcgcatttctttgcaaattaacaaagtggtttggagcatgcttgttgatggtaaatcttttgccgaggctgagatcaatgacatgatttatgacttcgaccgagattacaaggatgttggtgttgctcagtttacaacaaaaaattttgttgttagaaactgcctcccaaatgccaaatcagatatgcttttatcagcatggaatcctccacctgaatggggaaaaaaagttatgcttcgtgtggatgcaaagcagggagctccaaaggatggaagttctcctctggaactttttgaggtagagatttatcctctcaagatccatttaacagaaacaatgtacagaatgatgtggggatatttattcccagaagaagaacaggattcacaaagacggcaggaagtttggaagatctcaacaactactggtacaaaacgtggaaagaaagcttctttagtccctgacatgtctgcatttagcagtcaaacaatgaaggagtctgaggggtcatccaaatcaagtgccttggcccctggtaccagccaatcccctgttcctgcagattctgtacaagaatcaaaattgcaaagtaaagcactcattgcgagtggtccaaatcctgagttaagaagaacatcttcctttgacagatcatgggaagagactgttgcagaatcagttgctactgaacttgtcttacagagcattagtgggcctcttgggcctattgaacaagatgaatcctctaagaataaattgaaagatcccaaagctatcaaatctggcaggtcatcgcatgaagaaaagaaggtacaaaagtcacaagaagagaaaaaatctgccaggcctcgaaagatgatggagtttcacaatatcaagataagccaggttgagctatgtgttacctatgaaggatctagatttgtggtaaatgatctcaagttgctgatggatacatttcaccgtgttgagtttactggtacttggcggagacttttttcacgtgttaagaagcacatcatttggggagtcctgaagtctgtaactggaatgcaggtctgtatgtag

Protein Analysis

552

Amino Acids

62.19

Weight (kDa)

9.15

Isoelectric Point (pI)

61.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 595
Acc36I ACCTGC 2 cut(s) 1370, 1638
Acc65I GGTACC 1 cut(s) 1129
AccB1I GGYRCC 1 cut(s) 1129
AccB7I CCANNNNNTGG 1 cut(s) 862
AciI CCGC 1 cut(s) 1581
AclWI GGATC 4 cut(s) 159, 906, 1351, 1515
AcsI RAATTY 1 cut(s) 735
AcuI CTGAAG 2 cut(s) 254, 1648
AcvI CACGTG 1 cut(s) 1597
AfaI GTAC 7 cut(s) 438, 934, 1023, 1131, 1163, 1406, 1575
AfiI CCNNNNNNNGG 3 cut(s) 25, 811, 862
AflIII ACRYGT 3 cut(s) 56, 1058, 1596
AgsI TTSAA 5 cut(s) 163, 289, 485, 1324, 1353
AjnI CCWGG 3 cut(s) 1125, 1435, 1478
AjuI GAANNNNNNNTTGG 2 cut(s) 1130, 1162
Alw21I GWGCWC 1 cut(s) 855
Alw26I GTCTC 3 cut(s) 386, 1249, 1578
AlwI GGATC 4 cut(s) 159, 906, 1351, 1515
AlwNI CAGNNNCTG 1 cut(s) 1159
AoxI GGCC 5 cut(s) 80, 1121, 1306, 1315, 1438
ApeKI GCWGC 2 cut(s) 502, 538
ApoI RAATTY 1 cut(s) 735
Asp700I GAANNNNTTC 2 cut(s) 272, 1230
Asp718I GGTACC 1 cut(s) 1129
AspLEI GCGC 1 cut(s) 596
AspS9I GGNCC 4 cut(s) 1122, 1204, 1306, 1315
AsuHPI GGTGA 1 cut(s) 1546
AvaII GGWCC 1 cut(s) 1204
BaeI ACNNNNGTAYC 2 cut(s) 1396, 1429
BanI GGYRCC 1 cut(s) 1129
BanII GRGCYC 1 cut(s) 855
BbrPI CACGTG 1 cut(s) 1597
Bbv12I GWGCWC 1 cut(s) 855
BbvI GCAGC 2 cut(s) 489, 525
BccI CCATC 7 cut(s) 90, 274, 588, 634, 856, 1446, 1536
BceAI ACGGC 3 cut(s) 18, 565, 1003
BciT130I CCWGG 3 cut(s) 1127, 1437, 1480
BciVI GTATCC 1 cut(s) 1539
BcoDI GTCTC 3 cut(s) 386, 1249, 1578
BfaI CTAG 3 cut(s) 206, 494, 1511
BfmI CTRYAG 1 cut(s) 1151
BfuAI ACCTGC 2 cut(s) 1370, 1638
BfuI GTATCC 1 cut(s) 1539
BglI GCCNNNNNGGC 1 cut(s) 1314
BglII AGATCT 3 cut(s) 124, 442, 1004
BisI GCNGC 2 cut(s) 503, 539
BlpI GCTNAGC 1 cut(s) 542
BlsI GCNGC 2 cut(s) 504, 540
Bme1390I CCNGG 3 cut(s) 1127, 1437, 1480
Bme18I GGWCC 1 cut(s) 1204
BmgT120I GGNCC 4 cut(s) 1122, 1204, 1306, 1315
BmiI GGNNCC 3 cut(s) 275, 1124, 1131
BmrFI CCNGG 3 cut(s) 1127, 1437, 1480
BmsI GCATC 1 cut(s) 828
BpmI CTGGAG 1 cut(s) 410
Bpu1102I GCTNAGC 1 cut(s) 542
BpuEI CTTGAG 3 cut(s) 337, 892, 1516
BsaAI YACGTR 1 cut(s) 1597
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 3 cut(s) 656, 1118, 1125
BsaXI ACNNNNNCTCC 2 cut(s) 244, 274
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 811, 862
Bse1I ACTGG 5 cut(s) 19, 393, 1023, 1575, 1644
Bse3DI GCAATG 1 cut(s) 1193
BseBI CCWGG 3 cut(s) 1127, 1437, 1480
BseDI CCNNGG 3 cut(s) 656, 1118, 1125
BseGI GGATG 6 cut(s) 431, 580, 711, 843, 867, 1102
BseLI CCNNNNNNNGG 3 cut(s) 25, 811, 862
BseMI GCAATG 1 cut(s) 1193
BseMII CTCAG 6 cut(s) 135, 556, 653, 733, 1085, 1205
BseNI ACTGG 5 cut(s) 19, 393, 1023, 1575, 1644
BseRI GAGGAG 3 cut(s) 268, 271, 863
BseXI GCAGC 2 cut(s) 489, 525
Bsh1285I CGRYCG 1 cut(s) 693
BshFI GGCC 5 cut(s) 82, 1123, 1308, 1317, 1440
BshNI GGYRCC 1 cut(s) 1129
BsiEI CGRYCG 1 cut(s) 693
BsiHKAI GWGCWC 1 cut(s) 855
BslFI GGGAC 3 cut(s) 367, 430, 1036
BslI CCNNNNNNNGG 3 cut(s) 25, 811, 862
BsmAI GTCTC 3 cut(s) 386, 1249, 1578
BsmFI GGGAC 3 cut(s) 367, 430, 1036
BsmI GAATGC 1 cut(s) 1649
BsnI GGCC 5 cut(s) 82, 1123, 1308, 1317, 1440
Bso31I GGTCTC 1 cut(s) 386
Bsp1286I GDGCHC 1 cut(s) 855
Bsp1407I TGTACA 3 cut(s) 436, 932, 1161
Bsp1720I GCTNAGC 1 cut(s) 542
BspACI CCGC 1 cut(s) 1581
BspANI GGCC 5 cut(s) 82, 1123, 1308, 1317, 1440
BspCNI CTCAG 6 cut(s) 134, 555, 654, 732, 1086, 1206
BspLI GGNNCC 3 cut(s) 275, 1124, 1131
BspMAI CTGCAG 1 cut(s) 1155
BspMI ACCTGC 2 cut(s) 1370, 1638
BspPI GGATC 4 cut(s) 159, 906, 1351, 1515
BspT107I GGYRCC 1 cut(s) 1129
BspTNI GGTCTC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 1193
BsrGI TGTACA 3 cut(s) 436, 932, 1161
BsrI ACTGG 5 cut(s) 19, 393, 1023, 1575, 1644
BssECI CCNNGG 3 cut(s) 656, 1118, 1125
BssT1I CCWWGG 1 cut(s) 1118
Bst2UI CCWGG 3 cut(s) 1127, 1437, 1480
Bst4CI ACNGT 3 cut(s) 379, 1260, 1558
Bst6I CTCTTC 4 cut(s) 175, 284, 1247, 1415
BstAPI GCANNNNNTGC 1 cut(s) 1195
BstAUI TGTACA 3 cut(s) 436, 932, 1161
BstBAI YACGTR 1 cut(s) 1597
BstC8I GCNNGC 3 cut(s) 230, 302, 631
BstDEI CTNAG 7 cut(s) 121, 542, 662, 719, 1094, 1214, 1340
BstF5I GGATG 6 cut(s) 431, 580, 711, 843, 867, 1102
BstHHI GCGC 1 cut(s) 596
BstMAI GTCTC 3 cut(s) 386, 1249, 1578
BstMCI CGRYCG 1 cut(s) 693
BstMWI GCNNNNNNNGC 3 cut(s) 508, 1195, 1314
BstNI CCWGG 3 cut(s) 1127, 1437, 1480
BstNSI RCATGY 3 cut(s) 60, 633, 1062
BstSCI CCNGG 3 cut(s) 1125, 1435, 1478
BstSFI CTRYAG 1 cut(s) 1151
BstV1I GCAGC 2 cut(s) 489, 525
BstX2I RGATCY 6 cut(s) 124, 442, 911, 1004, 1356, 1507
BstXI CCANNNNNNTGG 1 cut(s) 809
BstYI RGATCY 6 cut(s) 124, 442, 911, 1004, 1356, 1507
BsuI GTATCC 1 cut(s) 1539
BsuRI GGCC 5 cut(s) 82, 1123, 1308, 1317, 1440
BtgZI GCGATG 1 cut(s) 1370
BtsCI GGATG 6 cut(s) 431, 580, 711, 843, 867, 1102
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 3 cut(s) 223, 375, 386
BveI ACCTGC 2 cut(s) 1370, 1638
Cac8I GCNNGC 3 cut(s) 230, 302, 631
CaiI CAGNNNCTG 1 cut(s) 1159
CfoI GCGC 1 cut(s) 596
Cfr13I GGNCC 4 cut(s) 1122, 1204, 1306, 1315
Csp6I GTAC 7 cut(s) 437, 933, 1022, 1130, 1162, 1405, 1574
CviAII CATG 8 cut(s) 57, 422, 630, 675, 791, 1059, 1247, 1390
CviQI GTAC 7 cut(s) 437, 933, 1022, 1130, 1162, 1405, 1574
DdeI CTNAG 7 cut(s) 121, 542, 662, 719, 1094, 1214, 1340
Eam1104I CTCTTC 4 cut(s) 175, 284, 1247, 1415
EarI CTCTTC 4 cut(s) 175, 284, 1247, 1415
EciI GGCGGA 1 cut(s) 1596
Ecl136II GAGCTC 1 cut(s) 853
Eco130I CCWWGG 1 cut(s) 1118
Eco147I AGGCCT 1 cut(s) 1440
Eco24I GRGCYC 1 cut(s) 855
Eco31I GGTCTC 1 cut(s) 386
Eco47I GGWCC 1 cut(s) 1204
Eco53kI GAGCTC 1 cut(s) 853
Eco57I CTGAAG 2 cut(s) 254, 1648
Eco72I CACGTG 1 cut(s) 1597
EcoICRI GAGCTC 1 cut(s) 853
EcoRII CCWGG 3 cut(s) 1125, 1435, 1478
EcoT14I CCWWGG 1 cut(s) 1118
EcoT38I GRGCYC 1 cut(s) 855
ErhI CCWWGG 1 cut(s) 1118
FaeI CATG 8 cut(s) 60, 425, 633, 678, 794, 1062, 1250, 1393
FalI AAGNNNNNCTT 4 cut(s) 812, 844, 1215, 1247
FaqI GGGAC 3 cut(s) 367, 430, 1036
FatI CATG 8 cut(s) 56, 421, 629, 674, 790, 1058, 1246, 1389
Fnu4HI GCNGC 2 cut(s) 503, 539
FokI GGATG 6 cut(s) 438, 567, 718, 850, 874, 1089
FriOI GRGCYC 1 cut(s) 855
Fsp4HI GCNGC 2 cut(s) 503, 539
FspAI RTGCGCAY 1 cut(s) 595
FspBI CTAG 3 cut(s) 206, 494, 1511
FspI TGCGCA 1 cut(s) 595
GlaI GCGC 1 cut(s) 595
GluI GCNGC 2 cut(s) 503, 539
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 5 cut(s) 82, 1123, 1308, 1317, 1440
HhaI GCGC 1 cut(s) 596
Hin1II CATG 8 cut(s) 60, 425, 633, 678, 794, 1062, 1250, 1393
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HindIII AAGCTT 1 cut(s) 1040
HphI GGTGA 1 cut(s) 1546
Hpy166II GTNNAC 2 cut(s) 725, 1568
Hpy188I TCNGA 5 cut(s) 95, 124, 264, 774, 1095
Hpy8I GTNNAC 2 cut(s) 725, 1568
HpyAV CCTTC 5 cut(s) 382, 406, 1080, 1395, 1498
HpyCH4III ACNGT 3 cut(s) 379, 1260, 1558
HpyCH4IV ACGT 2 cut(s) 1029, 1596
HpyCH4V TGCA 9 cut(s) 304, 456, 606, 841, 1066, 1153, 1179, 1264, 1647
HpyF10VI GCNNNNNNNGC 3 cut(s) 508, 1195, 1314
HpyF3I CTNAG 7 cut(s) 121, 542, 662, 719, 1094, 1214, 1340
HpySE526I ACGT 2 cut(s) 1029, 1596
Hsp92II CATG 8 cut(s) 60, 425, 633, 678, 794, 1062, 1250, 1393
HspAI GCGC 1 cut(s) 594
KpnI GGTACC 1 cut(s) 1133
LmnI GCTCC 5 cut(s) 297, 333, 626, 850, 858
Lsp1109I GCAGC 2 cut(s) 489, 525
LweI GCATC 1 cut(s) 828
MaeI CTAG 3 cut(s) 206, 494, 1511
MaeII ACGT 2 cut(s) 1029, 1596
MaeIII GTNAC 4 cut(s) 221, 1412, 1494, 1635
MfeI CAATTG 1 cut(s) 76
MflI RGATCY 6 cut(s) 124, 442, 911, 1004, 1356, 1507
MhlI GDGCHC 1 cut(s) 855
MluCI AATT 6 cut(s) 76, 480, 608, 735, 1174, 1348
MlyI GAGTC 4 cut(s) 268, 412, 1099, 1631
MroXI GAANNNNTTC 2 cut(s) 272, 1230
MseI TTAA 7 cut(s) 185, 479, 517, 611, 919, 1219, 1601
MslI CAYNNNNRTG 1 cut(s) 807
MspR9I CCNGG 3 cut(s) 1127, 1437, 1480
MunI CAATTG 1 cut(s) 76
Mva1269I GAATGC 1 cut(s) 1649
MvaI CCWGG 3 cut(s) 1127, 1437, 1480
MwoI GCNNNNNNNGC 3 cut(s) 508, 1195, 1314
NlaIII CATG 8 cut(s) 60, 425, 633, 678, 794, 1062, 1250, 1393
NlaIV GGNNCC 3 cut(s) 275, 1124, 1131
NmeAIII GCCGAG 1 cut(s) 681
NmuCI GTSAC 2 cut(s) 221, 1412
NsbI TGCGCA 1 cut(s) 595
NspI RCATGY 3 cut(s) 60, 633, 1062
PaeI GCATGC 1 cut(s) 633
PceI AGGCCT 1 cut(s) 1440
PciI ACATGT 2 cut(s) 56, 1058
PctI GAATGC 1 cut(s) 1649
PdmI GAANNNNTTC 2 cut(s) 272, 1230
PfeI GAWTC 8 cut(s) 198, 345, 795, 976, 1156, 1168, 1267, 1333
PflMI CCANNNNNTGG 1 cut(s) 862
PkrI GCNGC 2 cut(s) 504, 540
PleI GAGTC 4 cut(s) 267, 412, 1098, 1630
PmaCI CACGTG 1 cut(s) 1597
PmlI CACGTG 1 cut(s) 1597
PpsI GAGTC 4 cut(s) 267, 412, 1098, 1630
Ppu21I YACGTR 1 cut(s) 1597
PscI ACATGT 2 cut(s) 56, 1058
Psp124BI GAGCTC 1 cut(s) 855
Psp6I CCWGG 3 cut(s) 1125, 1435, 1478
PspCI CACGTG 1 cut(s) 1597
PspGI CCWGG 3 cut(s) 1125, 1435, 1478
PspN4I GGNNCC 3 cut(s) 275, 1124, 1131
PspPI GGNCC 4 cut(s) 1122, 1204, 1306, 1315
PsrI GAACNNNNNNTAC 3 cut(s) 37, 1274, 1306
PstI CTGCAG 1 cut(s) 1155
PstNI CAGNNNCTG 1 cut(s) 1159
PsuI RGATCY 6 cut(s) 124, 442, 911, 1004, 1356, 1507
RsaI GTAC 7 cut(s) 438, 934, 1023, 1131, 1163, 1406, 1575
RsaNI GTAC 7 cut(s) 437, 933, 1022, 1130, 1162, 1405, 1574
RseI CAYNNNNRTG 1 cut(s) 807
SacI GAGCTC 1 cut(s) 855
SaqAI TTAA 7 cut(s) 185, 479, 517, 611, 919, 1219, 1601
SatI GCNGC 2 cut(s) 503, 539
Sau96I GGNCC 4 cut(s) 1122, 1204, 1306, 1315
SchI GAGTC 4 cut(s) 268, 412, 1099, 1631
ScrFI CCNGG 3 cut(s) 1127, 1437, 1480
SduI GDGCHC 1 cut(s) 855
SfaNI GCATC 1 cut(s) 828
SfcI CTRYAG 1 cut(s) 1151
SfiI GGCCNNNNNGGCC 1 cut(s) 1314
SinI GGWCC 1 cut(s) 1204
SmiMI CAYNNNNRTG 1 cut(s) 807
SmlI CTYRAG 3 cut(s) 316, 907, 1531
SmoI CTYRAG 3 cut(s) 316, 907, 1531
SphI GCATGC 1 cut(s) 633
Sse9I AATT 6 cut(s) 76, 480, 608, 735, 1174, 1348
SseBI AGGCCT 1 cut(s) 1440
SsiI CCGC 1 cut(s) 1581
SspMI CTAG 3 cut(s) 206, 494, 1511
SstI GAGCTC 1 cut(s) 855
StuI AGGCCT 1 cut(s) 1440
StyD4I CCNGG 3 cut(s) 1125, 1435, 1478
StyI CCWWGG 1 cut(s) 1118
TaaI ACNGT 3 cut(s) 379, 1260, 1558
TaiI ACGT 2 cut(s) 1032, 1599
TaqI TCGA 3 cut(s) 33, 689, 1443
TaqII GACCGA 1 cut(s) 707
TasI AATT 6 cut(s) 76, 480, 608, 735, 1174, 1348
TatI WGTACW 3 cut(s) 436, 932, 1161
TfiI GAWTC 8 cut(s) 198, 345, 795, 976, 1156, 1168, 1267, 1333
Tru1I TTAA 7 cut(s) 185, 479, 517, 611, 919, 1219, 1601
Tru9I TTAA 7 cut(s) 185, 479, 517, 611, 919, 1219, 1601
TscAI CASTG 3 cut(s) 230, 382, 393
TseFI GTSAC 2 cut(s) 221, 1412
TseI GCWGC 2 cut(s) 502, 538
Tsp45I GTSAC 2 cut(s) 221, 1412
TspDTI ATGAA 6 cut(s) 257, 503, 1099, 1346, 1406, 1517
TspRI CASTG 3 cut(s) 230, 382, 393
Van91I CCANNNNNTGG 1 cut(s) 862
VpaK11BI GGWCC 1 cut(s) 1204
XapI RAATTY 1 cut(s) 735
XbaI TCTAGA 1 cut(s) 1510
XceI RCATGY 3 cut(s) 60, 633, 1062
XmnI GAANNNNTTC 2 cut(s) 272, 1230
XspI CTAG 3 cut(s) 206, 494, 1511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.