MD09G1044500.v1.1

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0011602
Physical Location & Seq
Reverse (-)
2883059 .. 2884531
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1044500.v1.1.491

Sequence Viewer

Length: 507 bp
ATGGATTTGGCAGCGGAGATAGGAAGAAGCGTAAGGTCCTCTTTCCATCAACACGCATCAAGTTTCAGAAGCACTTCAGATGTGAGATCCATCAACGACAACAACGACGATGAAGTTGATTTGCAGTGGGCTACAATCGAAAGGTTGCCAACGTTTGAACGTCTTAGAACCTCGTTATTTGATTGTCGTAGGAGCAATGCAGATCAGCAAGCCGATGAACAGGGTAAGAGGGTGATCGATGTAACAAAGATAGGGGCCCTAGAACGCCGGGTGTTCATTGACAAACTTCTCAAGGAAATTGAGGCAGATAACCACCGTCTCTTACACAAACTCAAAGAAAGAATAGACAGAGCGGGATTGCAATTACCGACAGTGGAAGTTCGATACCAAAATATTTTTGTAGAAGCAGAATGCGAAGTAGTTCAAGGAAAACCCCTCCCCACACTATGGACTGCGCTCAAAAGCATACTTTCTGTAAGTGTTATATTCATCTATATTTGTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

169

Amino Acids

19.34

Weight (kDa)

6.1

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 447
AccBSI CCGCTC 1 cut(s) 353
AciI CCGC 2 cut(s) 14, 353
AclI AACGTT 1 cut(s) 152
AclWI GGATC 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 447
AgsI TTSAA 2 cut(s) 158, 425
Alw26I GTCTC 1 cut(s) 323
AlwI GGATC 1 cut(s) 81
AoxI GGCC 1 cut(s) 255
ApaI GGGCCC 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 11
Asp700I GAANNNNTTC 2 cut(s) 73, 420
AspLEI GCGC 1 cut(s) 457
AspS9I GGNCC 3 cut(s) 36, 255, 256
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 244
AvaII GGWCC 1 cut(s) 36
BaeGI GKGCMC 1 cut(s) 259
BanII GRGCYC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 23
BccI CCATC 2 cut(s) 54, 98
BcnI CCSGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 1 cut(s) 260
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 3 cut(s) 36, 255, 256
BmiI GGNNCC 2 cut(s) 256, 257
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 269
Bsa29I ATCGAT 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 202
BseCI ATCGAT 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 447
BseMI GCAATG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 1 cut(s) 23
BshFI GGCC 1 cut(s) 257
BshVI ATCGAT 1 cut(s) 237
BsiSI CCGG 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 447
BsmAI GTCTC 1 cut(s) 323
BsmBI CGTCTC 1 cut(s) 323
BsmI GAATGC 1 cut(s) 416
BsnI GGCC 1 cut(s) 257
Bsp120I GGGCCC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 3 cut(s) 86, 202, 234
BspACI CCGC 2 cut(s) 14, 353
BspANI GGCC 1 cut(s) 257
BspDI ATCGAT 1 cut(s) 237
BspLI GGNNCC 2 cut(s) 256, 257
BspPI GGATC 1 cut(s) 81
BsrBI CCGCTC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 202
BssMI GATC 3 cut(s) 86, 202, 234
Bst4CI ACNGT 2 cut(s) 317, 373
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 164
BstHHI GCGC 1 cut(s) 457
BstKTI GATC 3 cut(s) 89, 205, 237
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 3 cut(s) 86, 202, 234
BstSCI CCNGG 1 cut(s) 267
BstSLI GKGCMC 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
Bsu15I ATCGAT 1 cut(s) 237
BsuRI GGCC 1 cut(s) 257
BsuTUI ATCGAT 1 cut(s) 237
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 2 cut(s) 131, 378
Cac8I GCNNGC 1 cut(s) 210
CfoI GCGC 1 cut(s) 457
Cfr13I GGNCC 3 cut(s) 36, 255, 256
ClaI ATCGAT 1 cut(s) 237
CviJI RGCY 3 cut(s) 131, 212, 257
CviKI_1 RGCY 3 cut(s) 131, 212, 257
DdeI CTNAG 1 cut(s) 164
DpnI GATC 3 cut(s) 88, 204, 236
DpnII GATC 3 cut(s) 86, 202, 234
Eco24I GRGCYC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 60
EcoO109I RGGNCCY 3 cut(s) 36, 255, 256
EcoT38I GRGCYC 1 cut(s) 259
Esp3I CGTCTC 1 cut(s) 323
FaiI YATR 4 cut(s) 448, 467, 485, 495
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FauI CCCGC 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 12
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 260
GlaI GCGC 1 cut(s) 456
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 268
HhaI GCGC 1 cut(s) 457
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HpaII CCGG 1 cut(s) 268
HphI GGTGA 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 68, 79
Hpy99I CGWCG 1 cut(s) 110
HpyCH4III ACNGT 2 cut(s) 317, 373
HpyCH4IV ACGT 2 cut(s) 152, 160
HpyCH4V TGCA 3 cut(s) 124, 200, 361
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 2 cut(s) 152, 160
HspAI GCGC 1 cut(s) 455
Kzo9I GATC 3 cut(s) 86, 202, 234
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 2 cut(s) 206, 281
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 65
MaeI CTAG 1 cut(s) 260
MaeII ACGT 2 cut(s) 152, 160
MaeIII GTNAC 1 cut(s) 241
MalI GATC 3 cut(s) 88, 204, 236
MbiI CCGCTC 1 cut(s) 353
MboI GATC 3 cut(s) 86, 202, 234
MboII GAAGA 1 cut(s) 36
MflI RGATCY 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 2 cut(s) 297, 362
MnlI CCTC 5 cut(s) 49, 181, 222, 295, 446
MroXI GAANNNNTTC 2 cut(s) 73, 420
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 268
MspR9I CCNGG 1 cut(s) 269
Mva1269I GAATGC 1 cut(s) 416
NciI CCSGG 1 cut(s) 269
NdeII GATC 3 cut(s) 86, 202, 234
NlaIV GGNNCC 2 cut(s) 256, 257
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PctI GAATGC 1 cut(s) 416
PdmI GAANNNNTTC 2 cut(s) 73, 420
PflMI CCANNNNNTGG 1 cut(s) 447
PkrI GCNGC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 36
Psp1406I AACGTT 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 36
PspN4I GGNNCC 2 cut(s) 256, 257
PspOMI GGGCCC 1 cut(s) 255
PspPI GGNCC 3 cut(s) 36, 255, 256
PspPPI RGGWCCY 1 cut(s) 36
PsuI RGATCY 1 cut(s) 86
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 3 cut(s) 86, 202, 234
Sau96I GGNCC 3 cut(s) 36, 255, 256
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 1 cut(s) 259
SetI ASST 5 cut(s) 38, 146, 155, 163, 173
SfaNI GCATC 1 cut(s) 65
SinI GGWCC 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 2 cut(s) 297, 362
SsiI CCGC 2 cut(s) 14, 353
SspI AATATT 1 cut(s) 394
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 317, 373
TaiI ACGT 2 cut(s) 155, 163
TaqI TCGA 3 cut(s) 138, 237, 382
TasI AATT 2 cut(s) 297, 362
TscAI CASTG 2 cut(s) 131, 378
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 4 cut(s) 126, 231, 265, 478
TspRI CASTG 2 cut(s) 131, 378
Van91I CCANNNNNTGG 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 36
XmnI GAANNNNTTC 2 cut(s) 73, 420
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.