Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0011602

Physical Location & Seq

Genomic Coordinates Reverse (-)

6957242 .. 6958546

Gene Structure 1305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG089500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTCAGATGGTTGGCAGAGATGACATAGAGTCGCTAAGAATTGAGTTGGAAGAGATAGGAAGAAGCTTTAGGTCATCAATTCAGAGTCGTAACTCCAGTTTCCGAGCCAATTCAGCATTGAGTTCTGCCAAAGATGACACTGATGCTCAATATGCTGTGCAGTGGGCAGCCATTGAGAGACTGCCAACGTTTGAACGGCTCAAATCATCTTTGTTTGACAAGGGTGATGATGGAAATGAACTTGATGGTGAAGGAAAGCGGGTGGTTGATGTTACCAAGCTTGGAGCTATGGAAAAGCATGTCTTCATAGATAAGCTCATCAAGCACATTGAGAATGACAACCTTCGTCTCTTACATAAAATCAGAAAAAGGATAGACAAGGTTGGAGTAAAGTTGCCCACTGTGGAGGTGAGGTATAAGAATCTCAGTGTCGAAGCAGTGTGTGAGGTAGTTCATGGAAAGCCCCTCCCAACTCTTTGGAACTCTGTCAGAAGCACGCTTTCTCTCTTTGCCAAGTTTCTAGGTTCCAAGACACAAGAGGCCAAGATAAGCATTATCAAAGACTTTTGTGGTTCAATAAAGCCTGGAAGGTTAACTTTACTGCTTGGCCCCCCAGGATGTGGGAAGACCTCCTTTTTAAAGGCTCTATCAGGAAATCTGGAAAAATCGCTCAAGGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009733 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010243 GO:0010817 GO:0014070 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022622 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071366 GO:0071407 GO:0071417 GO:0071495 GO:0071944 GO:0080026 GO:0099402 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

228

Amino Acids

25.37

Weight (kDa)

9.47

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	113 - 162	7.9e-07	ABC-transporter N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011602)

Species	Orthologous Gene IDs
malus_domestica	MD09G1044500.v1.1
pyrus_communis	pycom04g16560
rosa_chinensis	RchiOBHm_Chr2g0169401
rosa_multiflora	Rmu_co8440651.1_g000001 Rmu_co8502923.1_g000001 Rmu_sc0019699.1_g000001
rosa_samantha	Rh2BG624000 Rh2BG624200 Rh2BG624300 Rh2BG624400 Rh2CG592300 Rh2CG592600 Rh2CG592900 Rh2CG593100 Rh3BG089500 Rh3DG090500 Rh4BG278600 Rh4CG292700 Rh4CG292800 Rh4CG293900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	623
AciI	CCGC	1 cut(s)	262
AclI	AACGTT	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	623
AgsI	TTSAA	2 cut(s)	197, 579
AhdI	GACNNNNNGTC	1 cut(s)	31
AjnI	CCWGG	2 cut(s)	586, 616
AluBI	AGCT	4 cut(s)	69, 283, 290, 319
AluI	AGCT	4 cut(s)	69, 283, 290, 319
Alw26I	GTCTC	2 cut(s)	175, 356
AoxI	GGCC	2 cut(s)	543, 610
ApeKI	GCWGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	611
AsuHPI	GGTGA	3 cut(s)	239, 263, 424
BbsI	GAAGAC	2 cut(s)	298, 635
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	3 cut(s)	4, 227, 242
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	2 cut(s)	588, 618
BcoDI	GTCTC	2 cut(s)	175, 356
BfaI	CTAG	1 cut(s)	524
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	2 cut(s)	588, 618
BmeRI	GACNNNNNGTC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	611
BmiI	GGNNCC	2 cut(s)	529, 613
BmrFI	CCNGG	2 cut(s)	588, 618
BmsI	GCATC	1 cut(s)	136
BpiI	GAAGAC	2 cut(s)	298, 635
BpmI	CTGGAG	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	659
BsaJI	CCNNGG	1 cut(s)	616
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse1I	ACTGG	1 cut(s)	99
BseBI	CCWGG	2 cut(s)	588, 618
BseDI	CCNNGG	1 cut(s)	616
BseGI	GGATG	1 cut(s)	626
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMII	CTCAG	2 cut(s)	20, 442
BseNI	ACTGG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	182
BsgI	GTGCAG	1 cut(s)	182
BshFI	GGCC	2 cut(s)	545, 612
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmAI	GTCTC	2 cut(s)	175, 356
BsmBI	CGTCTC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	545, 612
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	2 cut(s)	545, 612
BspCNI	CTCAG	2 cut(s)	19, 441
BspLI	GGNNCC	2 cut(s)	529, 613
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	616
Bst2UI	CCWGG	2 cut(s)	588, 618
Bst4CI	ACNGT	1 cut(s)	406
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	500
BstDEI	CTNAG	3 cut(s)	6, 38, 428
BstF5I	GGATG	1 cut(s)	626
BstMAI	GTCTC	2 cut(s)	175, 356
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 155, 325
BstNI	CCWGG	2 cut(s)	588, 618
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	586, 616
BstV1I	GCAGC	1 cut(s)	182
BstV2I	GAAGAC	2 cut(s)	298, 635
BstXI	CCANNNNNNTGG	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	545, 612
BtsCI	GGATG	1 cut(s)	626
BtsI	GCAGTG	2 cut(s)	170, 447
BtsIMutI	CAGTG	5 cut(s)	141, 170, 402, 436, 447
Cac8I	GCNNGC	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	611
CviAII	CATG	2 cut(s)	302, 458
DdeI	CTNAG	3 cut(s)	6, 38, 428
DraI	TTTAAA	1 cut(s)	642
DriI	GACNNNNNGTC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	48
Eam1105I	GACNNNNNGTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	48
EcoRII	CCWGG	2 cut(s)	586, 616
Esp3I	CGTCTC	1 cut(s)	356
FaeI	CATG	2 cut(s)	305, 461
FaiI	YATR	8 cut(s)	29, 156, 293, 303, 311, 360, 420, 459
FalI	AAGNNNNNCTT	6 cut(s)	290, 322, 583, 615, 620, 652
FatI	CATG	2 cut(s)	301, 457
FauI	CCCGC	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	633
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	524
GluI	GCNGC	1 cut(s)	171
GsuI	CTGGAG	1 cut(s)	82
HaeIII	GGCC	2 cut(s)	545, 612
Hin1II	CATG	2 cut(s)	305, 461
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HindIII	AAGCTT	2 cut(s)	67, 281
HinfI	GANTC	3 cut(s)	32, 88, 424
HpaI	GTTAAC	1 cut(s)	597
HphI	GGTGA	3 cut(s)	239, 263, 424
Hpy166II	GTNNAC	1 cut(s)	597
Hpy188I	TCNGA	5 cut(s)	9, 87, 107, 368, 494
Hpy188III	TCNNGA	2 cut(s)	654, 662
Hpy8I	GTNNAC	1 cut(s)	597
HpyAV	CCTTC	3 cut(s)	248, 356, 585
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 155, 325
HpyF3I	CTNAG	3 cut(s)	6, 38, 428
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	305, 461
KspAI	GTTAAC	1 cut(s)	597
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	7 cut(s)	112, 573, 600, 603, 630, 639, 647
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	2 cut(s)	92, 274
MboII	GAAGA	4 cut(s)	65, 75, 298, 640
MluCI	AATT	3 cut(s)	42, 81, 112
MlyI	GAGTC	2 cut(s)	41, 97
MmeI	TCCRAC	2 cut(s)	30, 367
MnlI	CCTC	6 cut(s)	403, 408, 442, 479, 535, 643
MseI	TTAA	2 cut(s)	596, 641
MspR9I	CCNGG	2 cut(s)	588, 618
MvaI	CCWGG	2 cut(s)	588, 618
MwoI	GCNNNNNNNGC	3 cut(s)	116, 155, 325
NlaIII	CATG	2 cut(s)	305, 461
NlaIV	GGNNCC	2 cut(s)	529, 613
NspI	RCATGY	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	424
PflMI	CCANNNNNTGG	1 cut(s)	623
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	2 cut(s)	40, 96
PpsI	GAGTC	2 cut(s)	40, 96
Psp1406I	AACGTT	1 cut(s)	191
Psp6I	CCWGG	2 cut(s)	586, 616
PspGI	CCWGG	2 cut(s)	586, 616
PspN4I	GGNNCC	2 cut(s)	529, 613
PspPI	GGNCC	1 cut(s)	611
SaqAI	TTAA	2 cut(s)	596, 641
SatI	GCNGC	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	611
SchI	GAGTC	2 cut(s)	41, 97
ScrFI	CCNGG	2 cut(s)	588, 618
SfaNI	GCATC	1 cut(s)	136
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	3 cut(s)	42, 81, 112
SsiI	CCGC	1 cut(s)	262
SspMI	CTAG	1 cut(s)	524
StyD4I	CCNGG	2 cut(s)	586, 616
TaaI	ACNGT	1 cut(s)	406
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	435
TasI	AATT	3 cut(s)	42, 81, 112
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	2 cut(s)	596, 641
Tru9I	TTAA	2 cut(s)	596, 641
TscAI	CASTG	5 cut(s)	148, 170, 409, 436, 447
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	3 cut(s)	255, 298, 446
TspRI	CASTG	5 cut(s)	148, 170, 409, 436, 447
Van91I	CCANNNNNTGG	1 cut(s)	623
XceI	RCATGY	1 cut(s)	305
XspI	CTAG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.