Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0011602

Physical Location & Seq

Genomic Coordinates Reverse (-)

6960981 .. 6965462

Gene Structure 4482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG090500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGACTTTAAGAGATGACATAGAGTCGCTTAGAATTGAGTTGGAAGAGATAGGAAGAAGCTTTAGGTCATCAATTCAGAGTCGTAACTCCAGTTTCCGAGCCAATTCAGCATTGAGTTCTGCCAAAGATGACACTGATGCTCAATATGCTGTGCAGTGGGCAGCCATTGAGAGACTGCCAACGTTTGAACGGCTCAAATCATCTTTATTTGACAAGGGTGATGATGGAAATGAACTTGATGGTGAAGGAAAGCGGGTGGTTGATGTTACCAAGCTTGGAGCTATGGAAAAGCATGTCTTCATAGATAAGCTCATCAAGCACATCGAGAATGACAACCTTCGTCTCTTACGTAAAATCAGAAAAAGGATAGACAAGGTTGGAGTAAAGTTGCTCACTGTGGAGGTGAGGTATAAGAATCTCAGTGTCGAAGCAGTGTGTGAGGTAGTTCATGGAAAGCCCCTCCCAACTCTTTGGAACTCTGTCAGAAGCACACTTTCTCTCTTTGCCAAGTTTCTAGGTTCCAAGACACAAGAGGCCAAGATAAGCATTATCAAAGACTTTTGTGGTTCAATAAAGCCTGGAAGGTTAACTTTACTGCTTGGCCCCCCAGGATGTGGGAAGACCTCCTTTTTAAAGGCTCTATCAGGAAATCTGGAAAAATCGCTCAAGTTCTCTGGTGAAGTTACTTACAATGGACAGAAGCTAGCAGAGTTCATCCCCCAGAAAACATCAGCTTATATAAGCCAATTCGACCTGCATATTCCTCAGATGACTGTCAGGGAAATACTTGATTTTTCAGCTCGCTGTCAGGGTATTGGAAGCCGAGCCGATATTATGCTGGAAGTCAGTAAAAGGGAGAAGGAGGCAGGGATTATTCCACATCCAGATATAGATACTTACATGAAGGCAATTTCTCTCCAAGGACTGAAAAGAACCCTCCAGACGGACTACATTTTGAAGATAATCTCTAAGAAAGATCAAGCACACTATTGGTACCGCATGGAACCTCACAATTATGTCTCAGTTGATATGTTCTCAAAAAAATTAAAGGCATCTTCTTTTGGGAAGAAGCTAGATGAGGATCTTTTAGAGCCATTTGATAAGCTTAAAGACAATAACAATGCTCTTTCCTTTAGTGTGTATTCTCTTTCTAAATGGGAACTTTTTAGAGCTTGTTCGTCAAGAGAACTTCTTCTCATGAAGAGGAATTCTTTTATCTATGTATTCAAGACAGTTCAGGTTCATCCTCCAGTTCTTTCTACTTTTTGCCGTTCATTTAACATCAATATCCATGTTTCGCTTCCTGGCATCATTCTTTCAGACCATGGTTGCCGCAATGACAGCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009733 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010243 GO:0010817 GO:0014070 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022622 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071366 GO:0071407 GO:0071417 GO:0071495 GO:0071944 GO:0080026 GO:0099402 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

449

Amino Acids

50.97

Weight (kDa)

9.37

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	110 - 159	7.5e-06	ABC-transporter N-terminal
ABC_tran	PF00005	188 - 284	1.2e-11	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011602)

Species	Orthologous Gene IDs
malus_domestica	MD09G1044500.v1.1
pyrus_communis	pycom04g16560
rosa_chinensis	RchiOBHm_Chr2g0169401
rosa_multiflora	Rmu_co8440651.1_g000001 Rmu_co8502923.1_g000001 Rmu_sc0019699.1_g000001
rosa_samantha	Rh2BG624000 Rh2BG624200 Rh2BG624300 Rh2BG624400 Rh2CG592300 Rh2CG592600 Rh2CG592900 Rh2CG593100 Rh3BG089500 Rh3DG090500 Rh4BG278600 Rh4CG292700 Rh4CG292800 Rh4CG293900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	762
Acc65I	GGTACC	1 cut(s)	993
AccB1I	GGYRCC	1 cut(s)	993
AccB7I	CCANNNNNTGG	1 cut(s)	614
AciI	CCGC	3 cut(s)	253, 997, 1333
AclI	AACGTT	1 cut(s)	182
AclWI	GGATC	1 cut(s)	1089
AcsI	RAATTY	1 cut(s)	1207
AfaI	GTAC	1 cut(s)	995
AfiI	CCNNNNNNNGG	2 cut(s)	614, 943
AgsI	TTSAA	4 cut(s)	188, 570, 958, 1228
AhdI	GACNNNNNGTC	1 cut(s)	22
AjnI	CCWGG	3 cut(s)	577, 607, 1303
Alw26I	GTCTC	3 cut(s)	166, 347, 1024
AlwI	GGATC	1 cut(s)	1089
AoxI	GGCC	2 cut(s)	534, 601
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	1207
Asp700I	GAANNNNTTC	1 cut(s)	1191
Asp718I	GGTACC	1 cut(s)	993
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	4 cut(s)	230, 254, 415, 689
AsuNHI	GCTAGC	1 cut(s)	703
BanI	GGYRCC	1 cut(s)	993
BbsI	GAAGAC	2 cut(s)	289, 626
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	2 cut(s)	218, 233
BceAI	ACGGC	2 cut(s)	206, 1254
BciT130I	CCWGG	3 cut(s)	579, 609, 1305
BcoDI	GTCTC	3 cut(s)	166, 347, 1024
BfaI	CTAG	3 cut(s)	515, 704, 1073
BfuAI	ACCTGC	1 cut(s)	762
BisI	GCNGC	2 cut(s)	162, 1333
BlsI	GCNGC	2 cut(s)	163, 1334
Bme1390I	CCNGG	3 cut(s)	579, 609, 1305
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	4 cut(s)	520, 604, 995, 1005
BmrFI	CCNGG	3 cut(s)	579, 609, 1305
BmsI	GCATC	3 cut(s)	127, 1061, 1317
BmtI	GCTAGC	1 cut(s)	707
BpiI	GAAGAC	2 cut(s)	289, 626
BpmI	CTGGAG	3 cut(s)	73, 923, 1233
BpuEI	CTTGAG	1 cut(s)	650
BsaAI	YACGTR	1 cut(s)	350
BsaBI	GATNNNNATC	1 cut(s)	1080
BsaJI	CCNNGG	3 cut(s)	607, 919, 1324
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	2 cut(s)	614, 943
Bse118I	RCCGGY	1 cut(s)	1344
Bse1I	ACTGG	2 cut(s)	90, 1250
Bse3DI	GCAATG	1 cut(s)	1342
Bse8I	GATNNNNATC	1 cut(s)	1080
BseBI	CCWGG	3 cut(s)	579, 609, 1305
BseDI	CCNNGG	3 cut(s)	607, 919, 1324
BseGI	GGATG	4 cut(s)	617, 714, 880, 1243
BseJI	GATNNNNATC	1 cut(s)	1080
BseLI	CCNNNNNNNGG	2 cut(s)	614, 943
BseMI	GCAATG	1 cut(s)	1342
BseMII	CTCAG	3 cut(s)	433, 779, 1035
BseNI	ACTGG	2 cut(s)	90, 1250
BseXI	GCAGC	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	2 cut(s)	536, 603
BshNI	GGYRCC	1 cut(s)	993
BsiSI	CCGG	1 cut(s)	1345
BslI	CCNNNNNNNGG	2 cut(s)	614, 943
BsmAI	GTCTC	3 cut(s)	166, 347, 1024
BsmBI	CGTCTC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	536, 603
Bsp143I	GATC	2 cut(s)	976, 1081
Bsp19I	CCATGG	1 cut(s)	1324
BspACI	CCGC	3 cut(s)	253, 997, 1333
BspANI	GGCC	2 cut(s)	536, 603
BspCNI	CTCAG	3 cut(s)	432, 778, 1034
BspHI	TCATGA	1 cut(s)	1197
BspLI	GGNNCC	4 cut(s)	520, 604, 995, 1005
BspMI	ACCTGC	1 cut(s)	762
BspOI	GCTAGC	1 cut(s)	707
BspPI	GGATC	1 cut(s)	1089
BspT107I	GGYRCC	1 cut(s)	993
BsrDI	GCAATG	1 cut(s)	1342
BsrFI	RCCGGY	1 cut(s)	1344
BsrI	ACTGG	2 cut(s)	90, 1250
BssAI	RCCGGY	1 cut(s)	1344
BssECI	CCNNGG	3 cut(s)	607, 919, 1324
BssMI	GATC	2 cut(s)	976, 1081
BssT1I	CCWWGG	2 cut(s)	919, 1324
Bst2UI	CCWGG	3 cut(s)	579, 609, 1305
Bst4CI	ACNGT	3 cut(s)	397, 775, 1234
Bst6I	CTCTTC	2 cut(s)	39, 1196
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	2 cut(s)	705, 802
BstDEI	CTNAG	5 cut(s)	29, 419, 765, 969, 1021
BstDSI	CCRYGG	1 cut(s)	1324
BstF5I	GGATG	4 cut(s)	617, 714, 880, 1243
BstKTI	GATC	2 cut(s)	979, 1084
BstMAI	GTCTC	3 cut(s)	166, 347, 1024
BstMBI	GATC	2 cut(s)	976, 1081
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 146, 316, 1341
BstNI	CCWGG	3 cut(s)	579, 609, 1305
BstNSI	RCATGY	1 cut(s)	296
BstSCI	CCNGG	3 cut(s)	577, 607, 1303
BstSNI	TACGTA	1 cut(s)	350
BstV1I	GCAGC	1 cut(s)	173
BstV2I	GAAGAC	2 cut(s)	289, 626
BstX2I	RGATCY	1 cut(s)	1081
BstXI	CCANNNNNNTGG	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	1081
BsuRI	GGCC	2 cut(s)	536, 603
BtgI	CCRYGG	1 cut(s)	1324
BtsCI	GGATG	4 cut(s)	617, 714, 880, 1243
BtsI	GCAGTG	2 cut(s)	161, 438
BtsIMutI	CAGTG	5 cut(s)	132, 161, 393, 427, 438
BveI	ACCTGC	1 cut(s)	762
Cac8I	GCNNGC	2 cut(s)	705, 802
CciI	TCATGA	1 cut(s)	1197
Cfr10I	RCCGGY	1 cut(s)	1344
Cfr13I	GGNCC	1 cut(s)	602
Csp6I	GTAC	1 cut(s)	994
CviAII	CATG	7 cut(s)	293, 449, 901, 1000, 1198, 1292, 1325
CviQI	GTAC	1 cut(s)	994
DdeI	CTNAG	5 cut(s)	29, 419, 765, 969, 1021
DpnI	GATC	2 cut(s)	978, 1083
DpnII	GATC	2 cut(s)	976, 1081
DraI	TTTAAA	1 cut(s)	633
DriI	GACNNNNNGTC	1 cut(s)	22
Eam1104I	CTCTTC	2 cut(s)	39, 1196
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EarI	CTCTTC	2 cut(s)	39, 1196
Eco105I	TACGTA	1 cut(s)	350
Eco130I	CCWWGG	2 cut(s)	919, 1324
EcoRI	GAATTC	1 cut(s)	1207
EcoRII	CCWGG	3 cut(s)	577, 607, 1303
EcoT14I	CCWWGG	2 cut(s)	919, 1324
ErhI	CCWWGG	2 cut(s)	919, 1324
Esp3I	CGTCTC	1 cut(s)	347
FaeI	CATG	7 cut(s)	296, 452, 904, 1003, 1201, 1295, 1328
FalI	AAGNNNNNCTT	6 cut(s)	281, 313, 574, 606, 611, 643
FatI	CATG	7 cut(s)	292, 448, 900, 999, 1197, 1291, 1324
FauI	CCCGC	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	162, 1333
FokI	GGATG	4 cut(s)	624, 701, 867, 1230
Fsp4HI	GCNGC	2 cut(s)	162, 1333
FspBI	CTAG	3 cut(s)	515, 704, 1073
GluI	GCNGC	2 cut(s)	162, 1333
GsuI	CTGGAG	3 cut(s)	73, 923, 1233
HaeIII	GGCC	2 cut(s)	536, 603
HapII	CCGG	1 cut(s)	1345
Hin1II	CATG	7 cut(s)	296, 452, 904, 1003, 1201, 1295, 1328
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HindIII	AAGCTT	3 cut(s)	58, 272, 1103
HinfI	GANTC	3 cut(s)	23, 79, 415
HpaI	GTTAAC	1 cut(s)	588
HpaII	CCGG	1 cut(s)	1345
HphI	GGTGA	4 cut(s)	230, 254, 415, 689
Hpy166II	GTNNAC	1 cut(s)	588
Hpy188I	TCNGA	6 cut(s)	78, 98, 359, 485, 768, 1321
Hpy188III	TCNNGA	8 cut(s)	325, 645, 653, 884, 940, 1182, 1198, 1228
Hpy8I	GTNNAC	1 cut(s)	588
HpyAV	CCTTC	5 cut(s)	239, 347, 576, 853, 898
HpyCH4III	ACNGT	3 cut(s)	397, 775, 1234
HpyCH4IV	ACGT	2 cut(s)	182, 349
HpyCH4V	TGCA	2 cut(s)	154, 757
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 146, 316, 1341
HpyF3I	CTNAG	5 cut(s)	29, 419, 765, 969, 1021
HpySE526I	ACGT	2 cut(s)	182, 349
Hsp92II	CATG	7 cut(s)	296, 452, 904, 1003, 1201, 1295, 1328
KpnI	GGTACC	1 cut(s)	997
KspAI	GTTAAC	1 cut(s)	588
Kzo9I	GATC	2 cut(s)	976, 1081
LmnI	GCTCC	1 cut(s)	278
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	3 cut(s)	127, 1061, 1317
MaeI	CTAG	3 cut(s)	515, 704, 1073
MaeII	ACGT	2 cut(s)	182, 349
MaeIII	GTNAC	3 cut(s)	83, 265, 682
MalI	GATC	2 cut(s)	978, 1083
MboI	GATC	2 cut(s)	976, 1081
MboII	GAAGA	9 cut(s)	56, 66, 289, 631, 970, 1047, 1078, 1184, 1213
MflI	RGATCY	1 cut(s)	1081
MluCI	AATT	8 cut(s)	33, 72, 103, 746, 909, 1012, 1043, 1207
MlyI	GAGTC	2 cut(s)	32, 88
MmeI	TCCRAC	2 cut(s)	21, 358
MroXI	GAANNNNTTC	1 cut(s)	1191
MseI	TTAA	6 cut(s)	8, 587, 632, 1046, 1107, 1278
MslI	CAYNNNNRTG	1 cut(s)	1014
MspI	CCGG	1 cut(s)	1345
MspR9I	CCNGG	3 cut(s)	579, 609, 1305
MvaI	CCWGG	3 cut(s)	579, 609, 1305
MwoI	GCNNNNNNNGC	4 cut(s)	107, 146, 316, 1341
NcoI	CCATGG	1 cut(s)	1324
NdeII	GATC	2 cut(s)	976, 1081
NheI	GCTAGC	1 cut(s)	703
NlaIII	CATG	7 cut(s)	296, 452, 904, 1003, 1201, 1295, 1328
NlaIV	GGNNCC	4 cut(s)	520, 604, 995, 1005
NmeAIII	GCCGAG	1 cut(s)	848
NspI	RCATGY	1 cut(s)	296
PagI	TCATGA	1 cut(s)	1197
PcsI	WCGNNNNNNNCGW	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	1191
PfeI	GAWTC	1 cut(s)	415
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	2 cut(s)	163, 1334
PleI	GAGTC	2 cut(s)	31, 87
PpsI	GAGTC	2 cut(s)	31, 87
Ppu21I	YACGTR	1 cut(s)	350
Psp1406I	AACGTT	1 cut(s)	182
Psp6I	CCWGG	3 cut(s)	577, 607, 1303
PspGI	CCWGG	3 cut(s)	577, 607, 1303
PspN4I	GGNNCC	4 cut(s)	520, 604, 995, 1005
PspPI	GGNCC	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	1081
RsaI	GTAC	1 cut(s)	995
RsaNI	GTAC	1 cut(s)	994
RseI	CAYNNNNRTG	1 cut(s)	1014
SaqAI	TTAA	6 cut(s)	8, 587, 632, 1046, 1107, 1278
SatI	GCNGC	2 cut(s)	162, 1333
Sau3AI	GATC	2 cut(s)	976, 1081
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	2 cut(s)	32, 88
ScrFI	CCNGG	3 cut(s)	579, 609, 1305
SfaNI	GCATC	3 cut(s)	127, 1061, 1317
SmiMI	CAYNNNNRTG	1 cut(s)	1014
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
SnaBI	TACGTA	1 cut(s)	350
Sse9I	AATT	8 cut(s)	33, 72, 103, 746, 909, 1012, 1043, 1207
SsiI	CCGC	3 cut(s)	253, 997, 1333
SspMI	CTAG	3 cut(s)	515, 704, 1073
StyD4I	CCNGG	3 cut(s)	577, 607, 1303
StyI	CCWWGG	2 cut(s)	919, 1324
TaaI	ACNGT	3 cut(s)	397, 775, 1234
TaiI	ACGT	2 cut(s)	185, 352
TaqI	TCGA	3 cut(s)	324, 426, 750
TasI	AATT	8 cut(s)	33, 72, 103, 746, 909, 1012, 1043, 1207
TauI	GCSGC	1 cut(s)	1335
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	6 cut(s)	8, 587, 632, 1046, 1107, 1278
Tru9I	TTAA	6 cut(s)	8, 587, 632, 1046, 1107, 1278
TscAI	CASTG	5 cut(s)	139, 161, 400, 427, 438
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	8 cut(s)	246, 289, 437, 703, 917, 1214, 1232, 1263
TspGWI	ACGGA	1 cut(s)	959
TspRI	CASTG	5 cut(s)	139, 161, 400, 427, 438
Van91I	CCANNNNNTGG	1 cut(s)	614
XapI	RAATTY	1 cut(s)	1207
XceI	RCATGY	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	1191
XspI	CTAG	3 cut(s)	515, 704, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.