Rh2BG624400

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011602
Physical Location & Seq
Forward (+)
84625732 .. 84631996
6265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG624400.1

Sequence Viewer

Length: 786 bp
ATGGATTTGGCTGCAGAGATAGGAAGAAGTGTGAGGACTTCTTTTCATCAGCATGCATCAAGTTTCAGGAGCACTTCAGATGTCAGGTCAATGAAAGAGAATGATGACGATGAAGTTGAGCTGCAGTGGGCTGCCATTGAAAGATTGCCCACATTTGAACGTATTCGAACTTCACTCATGGGTTGTAACAAGGAGGACGACGATCATGAAGGTAAGAGTAAGAGGGTAGTTGATGTCACAAAGCTAGAAGCCCTGGAACGTCGTGTGTTCATTGATAAACTTCTCAAGCAAATAGAAGGAGATAATCAACGCCTCTTACAGAAACTTAAAGAAAGAATAGACAGAGTGGGACTGCAATTGCCAACTGTGGAAGTACGATACCAAAATTTGTTTGTAGAAGCAGAATGTGAAGTAGTTCAAGGAAAGCCCCTTCCAACACTATGGAACACGCTCAAAAGCTCTCTCTCTGTCATGACACAGATAATTGGATGCAAGTCTGAAGCATACAATCTAAAAATTCTCAAAGATGTCAGCGGCATCATCAAGCCTTCAAGGAAGAACAATGACCTAGTTAGAGAAATCAGCTTTCCAGTAGAAGGCTCAAAGGAATTGAATTTTCCTACTCGCTTCCCGCAAAATGGATGGGAGCAATTTAAAGCATGTCTCTGGAAGCGACATCTCTCCTACTGGAGAAATCCAAAATATAACCTGGCGCGATTGTTAATCACTGCTGCATCCTCTTTGATATTTGGAGCACTTCTTTGGCAGAAAGGACAGAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

261

Amino Acids

30.18

Weight (kDa)

9.2

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 216 - 256 1.2e-06 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 715
AciI CCGC 2 cut(s) 534, 632
AcsI RAATTY 3 cut(s) 385, 516, 613
AcuI CTGAAG 2 cut(s) 60, 519
AfaI GTAC 1 cut(s) 375
AfiI CCNNNNNNNGG 2 cut(s) 596, 638
AgsI TTSAA 5 cut(s) 140, 158, 419, 552, 613
AjnI CCWGG 2 cut(s) 252, 708
AluBI AGCT 4 cut(s) 121, 244, 459, 585
AluI AGCT 4 cut(s) 121, 244, 459, 585
Alw21I GWGCWC 2 cut(s) 74, 757
Alw26I GTCTC 1 cut(s) 668
ApeKI GCWGC 4 cut(s) 11, 121, 131, 731
ApoI RAATTY 3 cut(s) 385, 516, 613
Asp700I GAANNNNTTC 2 cut(s) 162, 414
AspLEI GCGC 1 cut(s) 715
AsuII TTCGAA 1 cut(s) 166
BarI GAAGNNNNNNTAC 2 cut(s) 154, 186
Bbv12I GWGCWC 2 cut(s) 74, 757
BbvI GCAGC 3 cut(s) 108, 118, 718
BccI CCATC 1 cut(s) 636
BciT130I CCWGG 2 cut(s) 254, 710
BcoDI GTCTC 1 cut(s) 668
BfaI CTAG 2 cut(s) 245, 569
BfmI CTRYAG 2 cut(s) 12, 122
BisI GCNGC 5 cut(s) 12, 122, 132, 535, 732
BlsI GCNGC 5 cut(s) 13, 123, 133, 536, 733
Bme1390I CCNGG 2 cut(s) 254, 710
BmrFI CCNGG 2 cut(s) 254, 710
BmsI GCATC 4 cut(s) 65, 479, 546, 743
BpmI CTGGAG 1 cut(s) 709
Bpu14I TTCGAA 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 2 cut(s) 596, 638
Bse1I ACTGG 2 cut(s) 590, 692
BseBI CCWGG 2 cut(s) 254, 710
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 3 cut(s) 494, 647, 734
BseLI CCNNNNNNNGG 2 cut(s) 596, 638
BseNI ACTGG 2 cut(s) 590, 692
BseXI GCAGC 3 cut(s) 108, 118, 718
Bsh1236I CGCG 1 cut(s) 715
BsiHKAI GWGCWC 2 cut(s) 74, 757
BslFI GGGAC 1 cut(s) 363
BslI CCNNNNNNNGG 2 cut(s) 596, 638
BsmAI GTCTC 1 cut(s) 668
BsmFI GGGAC 1 cut(s) 363
Bsp119I TTCGAA 1 cut(s) 166
Bsp1286I GDGCHC 2 cut(s) 74, 757
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 2 cut(s) 534, 632
BspFNI CGCG 1 cut(s) 715
BspHI TCATGA 2 cut(s) 205, 471
BspMAI CTGCAG 2 cut(s) 16, 126
BspT104I TTCGAA 1 cut(s) 166
BsrI ACTGG 2 cut(s) 590, 692
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 254, 710
Bst4CI ACNGT 1 cut(s) 367
BstBI TTCGAA 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 54
BstF5I GGATG 3 cut(s) 494, 647, 734
BstFNI CGCG 1 cut(s) 715
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 1 cut(s) 668
BstMBI GATC 1 cut(s) 202
BstNI CCWGG 2 cut(s) 254, 710
BstNSI RCATGY 2 cut(s) 56, 663
BstSCI CCNGG 2 cut(s) 252, 708
BstSFI CTRYAG 2 cut(s) 12, 122
BstUI CGCG 1 cut(s) 715
BstV1I GCAGC 3 cut(s) 108, 118, 718
BstXI CCANNNNNNTGG 1 cut(s) 441
BtsCI GGATG 3 cut(s) 494, 647, 734
BtsI GCAGTG 2 cut(s) 131, 726
BtsIMutI CAGTG 2 cut(s) 131, 726
Cac8I GCNNGC 1 cut(s) 54
CciI TCATGA 2 cut(s) 205, 471
CfoI GCGC 1 cut(s) 715
Csp6I GTAC 1 cut(s) 374
CviAII CATG 5 cut(s) 53, 178, 206, 472, 660
CviQI GTAC 1 cut(s) 374
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
DraI TTTAAA 1 cut(s) 655
Eco57I CTGAAG 2 cut(s) 60, 519
EcoRII CCWGG 2 cut(s) 252, 708
EcoT22I ATGCAT 1 cut(s) 58
FaeI CATG 5 cut(s) 56, 181, 209, 475, 663
FaiI YATR 8 cut(s) 54, 179, 207, 442, 473, 505, 661, 705
FaqI GGGAC 1 cut(s) 363
FatI CATG 5 cut(s) 52, 177, 205, 471, 659
FauI CCCGC 1 cut(s) 639
Fnu4HI GCNGC 5 cut(s) 12, 122, 132, 535, 732
FokI GGATG 3 cut(s) 501, 654, 721
Fsp4HI GCNGC 5 cut(s) 12, 122, 132, 535, 732
FspBI CTAG 2 cut(s) 245, 569
GlaI GCGC 1 cut(s) 714
GluI GCNGC 5 cut(s) 12, 122, 132, 535, 732
GsuI CTGGAG 1 cut(s) 709
HhaI GCGC 1 cut(s) 715
Hin1II CATG 5 cut(s) 56, 181, 209, 475, 663
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
Hpy188I TCNGA 2 cut(s) 79, 499
Hpy188III TCNNGA 4 cut(s) 67, 206, 472, 667
Hpy99I CGWCG 2 cut(s) 203, 264
HpyAV CCTTC 5 cut(s) 203, 290, 440, 558, 590
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 2 cut(s) 160, 259
HpyCH4V TGCA 6 cut(s) 14, 56, 124, 355, 492, 734
HpySE526I ACGT 2 cut(s) 160, 259
Hsp92II CATG 5 cut(s) 56, 181, 209, 475, 663
HspAI GCGC 1 cut(s) 713
Kzo9I GATC 1 cut(s) 202
LmnI GCTCC 3 cut(s) 69, 646, 752
LpnPI CCDG 9 cut(s) 52, 70, 239, 266, 603, 652, 673, 695, 722
Lsp1109I GCAGC 3 cut(s) 108, 118, 718
LweI GCATC 4 cut(s) 65, 479, 546, 743
MaeI CTAG 2 cut(s) 245, 569
MaeII ACGT 2 cut(s) 160, 259
MaeIII GTNAC 2 cut(s) 185, 235
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 2 cut(s) 36, 568
MfeI CAATTG 1 cut(s) 356
MhlI GDGCHC 2 cut(s) 74, 757
MluCI AATT 7 cut(s) 356, 385, 483, 516, 608, 613, 650
MmeI TCCRAC 1 cut(s) 458
MnlI CCTC 5 cut(s) 27, 187, 216, 323, 748
Mph1103I ATGCAT 1 cut(s) 58
MroXI GAANNNNTTC 2 cut(s) 162, 414
MseI TTAA 3 cut(s) 327, 654, 722
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 534
MspR9I CCNGG 2 cut(s) 254, 710
MunI CAATTG 1 cut(s) 356
MvaI CCWGG 2 cut(s) 254, 710
MvnI CGCG 1 cut(s) 715
NdeII GATC 1 cut(s) 202
NlaIII CATG 5 cut(s) 56, 181, 209, 475, 663
NmuCI GTSAC 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 58
NspI RCATGY 2 cut(s) 56, 663
NspV TTCGAA 1 cut(s) 166
PaeI GCATGC 1 cut(s) 56
PagI TCATGA 2 cut(s) 205, 471
PdmI GAANNNNTTC 2 cut(s) 162, 414
PkrI GCNGC 5 cut(s) 13, 123, 133, 536, 733
Psp6I CCWGG 2 cut(s) 252, 708
PspGI CCWGG 2 cut(s) 252, 708
PstI CTGCAG 2 cut(s) 16, 126
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 3 cut(s) 327, 654, 722
SatI GCNGC 5 cut(s) 12, 122, 132, 535, 732
Sau3AI GATC 1 cut(s) 202
ScrFI CCNGG 2 cut(s) 254, 710
SduI GDGCHC 2 cut(s) 74, 757
SfaNI GCATC 4 cut(s) 65, 479, 546, 743
SfcI CTRYAG 2 cut(s) 12, 122
SfuI TTCGAA 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SphI GCATGC 1 cut(s) 56
Sse9I AATT 7 cut(s) 356, 385, 483, 516, 608, 613, 650
SsiI CCGC 2 cut(s) 534, 632
SspMI CTAG 2 cut(s) 245, 569
StyD4I CCNGG 2 cut(s) 252, 708
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 2 cut(s) 163, 262
TaqI TCGA 1 cut(s) 166
TasI AATT 7 cut(s) 356, 385, 483, 516, 608, 613, 650
TauI GCSGC 1 cut(s) 537
Tru1I TTAA 3 cut(s) 327, 654, 722
Tru9I TTAA 3 cut(s) 327, 654, 722
TscAI CASTG 2 cut(s) 131, 733
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 4 cut(s) 11, 121, 131, 731
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 5 cut(s) 35, 107, 126, 222, 259
TspRI CASTG 2 cut(s) 131, 733
XapI RAATTY 3 cut(s) 385, 516, 613
XceI RCATGY 2 cut(s) 56, 663
XmnI GAANNNNTTC 2 cut(s) 162, 414
XspI CTAG 2 cut(s) 245, 569
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.