Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019699.1

Orthogroup ID

OG0011602

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 214

Gene Structure 213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019699.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

atggctcagttggcaggagcagatgaaattgagtctttcaggatagagctagcagagatcgggaggagcattagagcctcctttcgaagccatgcctcaagtttccgaagcacctctactgtcaatgccggaaacagtagaatggacgatgatgaagaatattatgacttgcaatgggctgcggttgagagactaccaacttttgagaggatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0008150 GO:0008643 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0033231 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

71

Amino Acids

8.07

Weight (kDa)

4.67

Isoelectric Point (pI)

69.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011602)

Species	Orthologous Gene IDs
malus_domestica	MD09G1044500.v1.1
pyrus_communis	pycom04g16560
rosa_chinensis	RchiOBHm_Chr2g0169401
rosa_multiflora	Rmu_co8440651.1_g000001 Rmu_co8502923.1_g000001 Rmu_sc0019699.1_g000001
rosa_samantha	Rh2BG624000 Rh2BG624200 Rh2BG624300 Rh2BG624400 Rh2CG592300 Rh2CG592600 Rh2CG592900 Rh2CG593100 Rh3BG089500 Rh3DG090500 Rh4BG278600 Rh4CG292700 Rh4CG292800 Rh4CG293900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	182
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	179
AsuII	TTCGAA	1 cut(s)	85
AsuNHI	GCTAGC	1 cut(s)	49
BarI	GAAGNNNNNNTAC	2 cut(s)	100, 132
BbvI	GCAGC	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BmtI	GCTAGC	1 cut(s)	53
Bpu14I	TTCGAA	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	179
BseMI	GCAATG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	184
Bsp119I	TTCGAA	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	179
BssMI	GATC	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	121, 137
BstBI	TTCGAA	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	6
BstKTI	GATC	2 cut(s)	60, 213
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	51
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	5 cut(s)	5, 49, 77, 90, 179
CviKI_1	RGCY	5 cut(s)	5, 49, 77, 90, 179
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	2 cut(s)	59, 212
DpnII	GATC	1 cut(s)	57
FaeI	CATG	1 cut(s)	95
FaiI	YATR	2 cut(s)	93, 165
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	1 cut(s)	180
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	1 cut(s)	95
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	1 cut(s)	129
Hpy188I	TCNGA	1 cut(s)	107
Hpy188III	TCNNGA	2 cut(s)	40, 61
HpyCH4III	ACNGT	2 cut(s)	121, 137
HpyCH4V	TGCA	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	2 cut(s)	17, 66
LpnPI	CCDG	2 cut(s)	25, 142
Lsp1109I	GCAGC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	50
MalI	GATC	2 cut(s)	59, 212
MboI	GATC	1 cut(s)	57
MboII	GAAGA	1 cut(s)	167
MluCI	AATT	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	5 cut(s)	57, 88, 106, 124, 201
MspI	CCGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	57
NheI	GCTAGC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	95
NspV	TTCGAA	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	41
SetI	ASST	2 cut(s)	51, 116
SfuI	TTCGAA	1 cut(s)	85
SgeI	CNNG	8 cut(s)	27, 52, 62, 73, 104, 111, 141, 181
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	1 cut(s)	182
SspI	AATATT	1 cut(s)	161
SspMI	CTAG	1 cut(s)	50
TaaI	ACNGT	2 cut(s)	121, 137
TaqI	TCGA	1 cut(s)	85
TasI	AATT	1 cut(s)	27
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	39, 168
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.