Rh2CG592900

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011602
Physical Location & Seq
Forward (+)
76922950 .. 76924027
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG592900.1

Sequence Viewer

Length: 648 bp
ATGGATTTGGCTGCAGAGATAGGAAGAAGTGTGAAGACTTCTTTTCATCAGCATGCATCAAGTTTCAGGAGCACTTCAGATGTCAGGTCCATGAAAGAGAATGATGACGATGAAGTTGAGCTGCAGTGGGCTGCCATTGAAAGATTGCCCACATTTGAACGTATTCGAACTTCACTCATGGGTTGTAACAAGGAGGACGATGATCATGAAGGTAAGAGTAAGAGGGTAGTTGATGTTACAAAGCTAGAAGCCCTGGAACGTCATGTGTTCATTGATAAACTTCTCAAGGAAATAGAAGGAGATAATCAACGCCTCTTACAGAAACTCAAAGAAAGAATAGAAAGAGTGGGACTGCAATTGCCAACTGTGGAAGTACGATACCAAAATTTGTTTGTAGAAGCAGAATGTGAAGTAGTTCAAGGAAAGCCCCTTCCAACACTATGGAACACGCTCAAAAGCTCTCTCTCTGTCATGACACAGATAATTGGATGCAAGTCTGAAGCATACAATCTAAAAATTCTCAAAGATGTCAGCGGTATCATCAAGCCTTCAAGGATGACTCTTTTACTTGGTCCTCCAGGCTGTGGAAAAACAACCTTATTACAGGCACTTGCAGGAAAACATAACCAATCTCTCAAGGTTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

215

Amino Acids

24.27

Weight (kDa)

7.68

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 174 - 209 1.3e-06 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 584
AciI CCGC 1 cut(s) 534
AcsI RAATTY 2 cut(s) 385, 516
AcuI CTGAAG 2 cut(s) 60, 519
AfaI GTAC 1 cut(s) 375
AfiI CCNNNNNNNGG 1 cut(s) 584
AgsI TTSAA 4 cut(s) 140, 158, 419, 552
AjnI CCWGG 2 cut(s) 252, 577
AluBI AGCT 3 cut(s) 121, 244, 459
AluI AGCT 3 cut(s) 121, 244, 459
Alw21I GWGCWC 1 cut(s) 74
ApeKI GCWGC 3 cut(s) 11, 121, 131
ApoI RAATTY 2 cut(s) 385, 516
Asp700I GAANNNNTTC 2 cut(s) 162, 414
AspS9I GGNCC 2 cut(s) 87, 572
AsuII TTCGAA 1 cut(s) 166
AvaII GGWCC 2 cut(s) 87, 572
BarI GAAGNNNNNNTAC 2 cut(s) 154, 186
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 2 cut(s) 108, 118
BciT130I CCWGG 2 cut(s) 254, 579
BclI TGATCA 1 cut(s) 202
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 2 cut(s) 12, 122
BisI GCNGC 3 cut(s) 12, 122, 132
BlsI GCNGC 3 cut(s) 13, 123, 133
Bme1390I CCNGG 2 cut(s) 254, 579
Bme18I GGWCC 2 cut(s) 87, 572
BmgT120I GGNCC 2 cut(s) 87, 572
BmrFI CCNGG 2 cut(s) 254, 579
BmsI GCATC 2 cut(s) 65, 479
BpiI GAAGAC 1 cut(s) 41
BpmI CTGGAG 1 cut(s) 561
Bpu14I TTCGAA 1 cut(s) 166
BpuEI CTTGAG 2 cut(s) 269, 620
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 584
BseBI CCWGG 2 cut(s) 254, 579
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 2 cut(s) 494, 561
BseLI CCNNNNNNNGG 1 cut(s) 584
BseXI GCAGC 2 cut(s) 108, 118
BsiHKAI GWGCWC 1 cut(s) 74
BslFI GGGAC 1 cut(s) 363
BslI CCNNNNNNNGG 1 cut(s) 584
BsmFI GGGAC 1 cut(s) 363
Bsp119I TTCGAA 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 1 cut(s) 534
BspHI TCATGA 2 cut(s) 205, 471
BspMAI CTGCAG 2 cut(s) 16, 126
BspT104I TTCGAA 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 254, 579
Bst4CI ACNGT 1 cut(s) 367
BstBI TTCGAA 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 54
BstF5I GGATG 2 cut(s) 494, 561
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstNI CCWGG 2 cut(s) 254, 579
BstNSI RCATGY 1 cut(s) 56
BstSCI CCNGG 2 cut(s) 252, 577
BstSFI CTRYAG 2 cut(s) 12, 122
BstV1I GCAGC 2 cut(s) 108, 118
BstV2I GAAGAC 1 cut(s) 41
BstXI CCANNNNNNTGG 1 cut(s) 441
BtsCI GGATG 2 cut(s) 494, 561
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 54
CciI TCATGA 2 cut(s) 205, 471
Cfr13I GGNCC 2 cut(s) 87, 572
Csp6I GTAC 1 cut(s) 374
CviAII CATG 6 cut(s) 53, 91, 178, 206, 263, 472
CviJI RGCY 9 cut(s) 11, 121, 131, 244, 251, 427, 459, 547, 582
CviKI_1 RGCY 9 cut(s) 11, 121, 131, 244, 251, 427, 459, 547, 582
CviQI GTAC 1 cut(s) 374
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eco47I GGWCC 2 cut(s) 87, 572
Eco57I CTGAAG 2 cut(s) 60, 519
EcoRII CCWGG 2 cut(s) 252, 577
EcoT22I ATGCAT 1 cut(s) 58
FaeI CATG 6 cut(s) 56, 94, 181, 209, 266, 475
FaiI YATR 9 cut(s) 54, 92, 179, 207, 264, 442, 473, 505, 624
FaqI GGGAC 1 cut(s) 363
FatI CATG 6 cut(s) 52, 90, 177, 205, 262, 471
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 3 cut(s) 12, 122, 132
FokI GGATG 2 cut(s) 501, 568
Fsp4HI GCNGC 3 cut(s) 12, 122, 132
FspBI CTAG 1 cut(s) 245
GluI GCNGC 3 cut(s) 12, 122, 132
GsuI CTGGAG 1 cut(s) 561
Hin1II CATG 6 cut(s) 56, 94, 181, 209, 266, 475
HinfI GANTC 1 cut(s) 559
Hpy188I TCNGA 2 cut(s) 79, 499
Hpy188III TCNNGA 3 cut(s) 67, 206, 472
HpyAV CCTTC 4 cut(s) 203, 290, 440, 558
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 2 cut(s) 160, 259
HpyCH4V TGCA 6 cut(s) 14, 56, 124, 355, 492, 614
HpySE526I ACGT 2 cut(s) 160, 259
Hsp92II CATG 6 cut(s) 56, 94, 181, 209, 266, 475
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 1 cut(s) 202
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 8 cut(s) 52, 70, 239, 266, 564, 590, 591, 600
Lsp1109I GCAGC 2 cut(s) 108, 118
LweI GCATC 2 cut(s) 65, 479
MaeI CTAG 1 cut(s) 245
MaeII ACGT 2 cut(s) 160, 259
MaeIII GTNAC 2 cut(s) 185, 235
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 2 cut(s) 36, 46
MfeI CAATTG 1 cut(s) 356
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 4 cut(s) 356, 385, 483, 516
MlyI GAGTC 1 cut(s) 553
MmeI TCCRAC 1 cut(s) 458
MnlI CCTC 4 cut(s) 187, 216, 323, 585
Mph1103I ATGCAT 1 cut(s) 58
MroXI GAANNNNTTC 2 cut(s) 162, 414
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 534
MspR9I CCNGG 2 cut(s) 254, 579
MunI CAATTG 1 cut(s) 356
MvaI CCWGG 2 cut(s) 254, 579
NdeII GATC 1 cut(s) 202
NlaIII CATG 6 cut(s) 56, 94, 181, 209, 266, 475
NsiI ATGCAT 1 cut(s) 58
NspI RCATGY 1 cut(s) 56
NspV TTCGAA 1 cut(s) 166
PaeI GCATGC 1 cut(s) 56
PagI TCATGA 2 cut(s) 205, 471
PdmI GAANNNNTTC 2 cut(s) 162, 414
PflMI CCANNNNNTGG 1 cut(s) 584
PkrI GCNGC 3 cut(s) 13, 123, 133
PleI GAGTC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 553
Psp6I CCWGG 2 cut(s) 252, 577
PspGI CCWGG 2 cut(s) 252, 577
PspPI GGNCC 2 cut(s) 87, 572
PstI CTGCAG 2 cut(s) 16, 126
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
RseI CAYNNNNRTG 1 cut(s) 51
SatI GCNGC 3 cut(s) 12, 122, 132
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 2 cut(s) 87, 572
SchI GAGTC 1 cut(s) 553
ScrFI CCNGG 2 cut(s) 254, 579
SduI GDGCHC 1 cut(s) 74
SetI ASST 9 cut(s) 89, 123, 163, 214, 246, 262, 461, 599, 642
SfaNI GCATC 2 cut(s) 65, 479
SfcI CTRYAG 2 cut(s) 12, 122
SfuI TTCGAA 1 cut(s) 166
SinI GGWCC 2 cut(s) 87, 572
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 2 cut(s) 284, 635
SmoI CTYRAG 2 cut(s) 284, 635
SphI GCATGC 1 cut(s) 56
Sse9I AATT 4 cut(s) 356, 385, 483, 516
SsiI CCGC 1 cut(s) 534
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 252, 577
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 2 cut(s) 163, 262
TaqI TCGA 1 cut(s) 166
TasI AATT 4 cut(s) 356, 385, 483, 516
TscAI CASTG 1 cut(s) 131
TseI GCWGC 3 cut(s) 11, 121, 131
TspDTI ATGAA 5 cut(s) 35, 107, 126, 222, 259
TspRI CASTG 1 cut(s) 131
Van91I CCANNNNNTGG 1 cut(s) 584
VpaK11BI GGWCC 2 cut(s) 87, 572
XapI RAATTY 2 cut(s) 385, 516
XceI RCATGY 1 cut(s) 56
XmnI GAANNNNTTC 2 cut(s) 162, 414
XspI CTAG 1 cut(s) 245
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.