Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0011602

Physical Location & Seq

Genomic Coordinates Reverse (-)

55321840 .. 55327941

Gene Structure 6102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG293900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGCTCAGTTGGCAGGAGCAGATGAAATTGAGTCTTTCAGGATAGAGCTAGCAGAGATTGGGAGGAGCATTAGAGCCTCCTTTCGAAGCCATGCCTCAAGTTTCCGAAGCACCTCTACTGTCAATGCCGGAGACAGTAGAATGGACGATGATGAAGAATATTATGACTTGCAATGGGCTGCGGTTGAGAGGCTACCAACTTTTGAGAGGATCACATCAGCTTTGTTTGATGATCATGATGGCGCATCGGCAAAAGGAGATGTTAAGGGGACTAGGGTGGTTGATGTTACGAAGATTGGAGCTCAAGAAAGGCGTGTTTTCATAGAGAAGCTCATCAAACATATTGAGAATGATAATCTTCAGCTGTTGCAGAAAATTAGAAGAAGAATAGACAAGGTTGGTGTGAAGTTGCCCACTGTTGAAGTAAGATACAAGAATCTTTGTGTGGAAGCAGAGTGTAAGGTAGTTCACGGCAAGCCCCTCCCCACTCTATGGAATTCTCTAAAGAGTTTGATTGCGAATGACCTTATTGCTTGGCCCTCCGGGTTGTGGCAAAACCACATTACTGATGGCACTCTCAGGAAAGCTAAGCCATTCTCTCAAGAGATTATGATGGAAGTTAGTAGAAGAGAAAAGCAGGCAGGAATAGTCCCGGATCCTGATGTAGATGCTTACATGAAGGCCATATCTGTTAATGGACTGAAAAGTACACTTCAAACTGACTATATTCTAAAGGTTCTTCCGCCATTTCCTTCTACTCTTTGCTATGCACCTAACATCCATATCCTTGTTTCGGTGTCTGGAAACACAACTCTTGGGAAACAAGTGCTGGAAAGCCGCGGATTGCATTTCGATGACTATTTTTATTGGATATCAGTAGGTGCTTTAATGGGATTCACATTACTATTCAATATTGGTTTCACCTTGGCTTTAACTTTCTTGAAGTCTCCTGGAAAGTCCCTTTCTCTTATTTCTTATGAAAAGTACCATCAACTACAAGGACAAAGAGACGACAGAGGCAGTTTAGATGCAGAGGGAAAATCCACCGGTGAACCTAAGACTAGTGTAGAACCTAAGAAGGGAAGGATGGTTTTACCATTTGAGCCCCTAACTGTTACATTCCAAGATGTACAATACTATGTTGACACCCCTTTGGAAGAACAAGGAGTTAGTCAAGCAAGCGAGTTCACCGTTTCCTGGTTCAAAGGATTTGGAGTTTCCTACCCGCTATCCACTAAATGGTTGGGGGCAGTTCAAAGCGTGCTTTTGGAAACAGAATTTGTCTTATTGGAGAAGTCCCTCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0008150 GO:0008643 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0033231 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

435

Amino Acids

48.75

Weight (kDa)

6.13

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	117 - 166	4.3e-06	ABC-transporter N-terminal
PDR_assoc	PF08370	267 - 322	1.2e-25	Plant PDR ABC transporter associated

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011602)

Species	Orthologous Gene IDs
malus_domestica	MD09G1044500.v1.1
pyrus_communis	pycom04g16560
rosa_chinensis	RchiOBHm_Chr2g0169401
rosa_multiflora	Rmu_co8440651.1_g000001 Rmu_co8502923.1_g000001 Rmu_sc0019699.1_g000001
rosa_samantha	Rh2BG624000 Rh2BG624200 Rh2BG624300 Rh2BG624400 Rh2CG592300 Rh2CG592600 Rh2CG592900 Rh2CG593100 Rh3BG089500 Rh3DG090500 Rh4BG278600 Rh4CG292700 Rh4CG292800 Rh4CG293900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	492, 1239
AccII	CGCG	1 cut(s)	840
AciI	CCGC	5 cut(s)	182, 743, 838, 840, 1226
AclWI	GGATC	3 cut(s)	218, 650, 663
AcsI	RAATTY	2 cut(s)	496, 1277
AcuI	CTGAAG	1 cut(s)	344
AfaI	GTAC	3 cut(s)	709, 986, 1131
AfiI	CCNNNNNNNGG	6 cut(s)	492, 549, 793, 1079, 1197, 1239
AgeI	ACCGGT	1 cut(s)	1046
AgsI	TTSAA	6 cut(s)	422, 716, 910, 943, 1204, 1256
AhlI	ACTAGT	1 cut(s)	1061
AjnI	CCWGG	2 cut(s)	949, 1196
AluBI	AGCT	6 cut(s)	49, 221, 302, 331, 364, 587
AluI	AGCT	6 cut(s)	49, 221, 302, 331, 364, 587
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	3 cut(s)	126, 951, 1002
AlwI	GGATC	3 cut(s)	218, 650, 663
AoxI	GGCC	2 cut(s)	536, 681
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	2 cut(s)	496, 1277
AsiGI	ACCGGT	1 cut(s)	1046
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	537
AsuC2I	CCSGG	2 cut(s)	544, 653
AsuHPI	GGTGA	3 cut(s)	913, 1061, 1180
AsuII	TTCGAA	1 cut(s)	85
AsuNHI	GCTAGC	1 cut(s)	49
BamHI	GGATCC	1 cut(s)	655
BanII	GRGCYC	2 cut(s)	304, 1107
BarI	GAAGNNNNNNTAC	2 cut(s)	100, 132
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	5 cut(s)	233, 563, 607, 996, 1081
BceAI	ACGGC	1 cut(s)	487
BciT130I	CCWGG	2 cut(s)	951, 1198
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	2 cut(s)	544, 653
BcoDI	GTCTC	3 cut(s)	126, 951, 1002
BcuI	ACTAGT	1 cut(s)	1061
BfaI	CTAG	3 cut(s)	50, 273, 1062
BisI	GCNGC	2 cut(s)	180, 838
BlpI	GCTNAGC	1 cut(s)	588
BlsI	GCNGC	2 cut(s)	181, 839
Bme1390I	CCNGG	4 cut(s)	544, 653, 951, 1198
BmgT120I	GGNCC	1 cut(s)	537
BmiI	GGNNCC	1 cut(s)	657
BmrFI	CCNGG	4 cut(s)	544, 653, 951, 1198
BmsI	GCATC	3 cut(s)	254, 658, 1018
BmtI	GCTAGC	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	85
BpuEI	CTTGAG	3 cut(s)	82, 288, 585
BpuMI	CCSGG	2 cut(s)	544, 653
BsaJI	CCNNGG	2 cut(s)	838, 924
BsaWI	WCCGGW	1 cut(s)	1046
Bsc4I	CCNNNNNNNGG	6 cut(s)	492, 549, 793, 1079, 1197, 1239
Bse118I	RCCGGY	1 cut(s)	1046
Bse3DI	GCAATG	1 cut(s)	179
BseBI	CCWGG	2 cut(s)	951, 1198
BseDI	CCNNGG	2 cut(s)	838, 924
BseGI	GGATG	2 cut(s)	777, 1092
BseLI	CCNNNNNNNGG	6 cut(s)	492, 549, 793, 1079, 1197, 1239
BseMI	GCAATG	1 cut(s)	179
BseMII	CTCAG	2 cut(s)	20, 592
BseRI	GAGGAG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	840
BshFI	GGCC	2 cut(s)	538, 683
BshTI	ACCGGT	1 cut(s)	1046
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	4 cut(s)	129, 543, 653, 1047
BslFI	GGGAC	4 cut(s)	283, 635, 943, 1282
BslI	CCNNNNNNNGG	6 cut(s)	492, 549, 793, 1079, 1197, 1239
BsmAI	GTCTC	3 cut(s)	126, 951, 1002
BsmBI	CGTCTC	1 cut(s)	1002
BsmFI	GGGAC	4 cut(s)	283, 635, 943, 1282
BsnI	GGCC	2 cut(s)	538, 683
Bsp119I	TTCGAA	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	304, 1107
Bsp1407I	TGTACA	1 cut(s)	1129
Bsp143I	GATC	3 cut(s)	210, 232, 655
Bsp1720I	GCTNAGC	1 cut(s)	588
BspACI	CCGC	5 cut(s)	182, 743, 838, 840, 1226
BspANI	GGCC	2 cut(s)	538, 683
BspCNI	CTCAG	2 cut(s)	19, 591
BspFNI	CGCG	1 cut(s)	840
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	657
BspOI	GCTAGC	1 cut(s)	53
BspPI	GGATC	3 cut(s)	218, 650, 663
BspT104I	TTCGAA	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	1046
BsrGI	TGTACA	1 cut(s)	1129
BssAI	RCCGGY	1 cut(s)	1046
BssECI	CCNNGG	2 cut(s)	838, 924
BssMI	GATC	3 cut(s)	210, 232, 655
BssT1I	CCWWGG	1 cut(s)	924
Bst2UI	CCWGG	2 cut(s)	951, 1198
Bst4CI	ACNGT	5 cut(s)	121, 137, 418, 1114, 1192
Bst6I	CTCTTC	1 cut(s)	622
BstAUI	TGTACA	1 cut(s)	1129
BstBI	TTCGAA	1 cut(s)	85
BstC8I	GCNNGC	5 cut(s)	51, 476, 639, 1180, 1262
BstDEI	CTNAG	5 cut(s)	6, 578, 588, 1056, 1074
BstDSI	CCRYGG	1 cut(s)	838
BstF5I	GGATG	2 cut(s)	777, 1092
BstFNI	CGCG	1 cut(s)	840
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	3 cut(s)	213, 235, 658
BstMAI	GTCTC	3 cut(s)	126, 951, 1002
BstMBI	GATC	3 cut(s)	210, 232, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	951, 1198
BstSCI	CCNGG	4 cut(s)	542, 651, 949, 1196
BstUI	CGCG	1 cut(s)	840
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BsuRI	GGCC	2 cut(s)	538, 683
BtgI	CCRYGG	1 cut(s)	838
BtsCI	GGATG	2 cut(s)	777, 1092
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	5 cut(s)	51, 476, 639, 1180, 1262
CciI	TCATGA	1 cut(s)	235
CfoI	GCGC	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	1046
Cfr13I	GGNCC	1 cut(s)	537
Cfr42I	CCGCGG	1 cut(s)	841
Csp6I	GTAC	3 cut(s)	708, 985, 1130
CspAI	ACCGGT	1 cut(s)	1046
CviAII	CATG	3 cut(s)	92, 236, 676
CviQI	GTAC	3 cut(s)	708, 985, 1130
DdeI	CTNAG	5 cut(s)	6, 578, 588, 1056, 1074
DpnI	GATC	3 cut(s)	212, 234, 657
DpnII	GATC	3 cut(s)	210, 232, 655
Eam1104I	CTCTTC	1 cut(s)	622
EarI	CTCTTC	1 cut(s)	622
EciI	GGCGGA	1 cut(s)	732
Ecl136II	GAGCTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	924
Eco24I	GRGCYC	2 cut(s)	304, 1107
Eco32I	GATATC	1 cut(s)	873
Eco53kI	GAGCTC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	344
EcoICRI	GAGCTC	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	496
EcoRII	CCWGG	2 cut(s)	949, 1196
EcoRV	GATATC	1 cut(s)	873
EcoT14I	CCWWGG	1 cut(s)	924
EcoT38I	GRGCYC	2 cut(s)	304, 1107
ErhI	CCWWGG	1 cut(s)	924
Esp3I	CGTCTC	1 cut(s)	1002
FaeI	CATG	3 cut(s)	95, 239, 679
FaqI	GGGAC	4 cut(s)	283, 635, 943, 1282
FatI	CATG	3 cut(s)	91, 235, 675
FauI	CCCGC	1 cut(s)	1233
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	180, 838
FokI	GGATG	2 cut(s)	764, 1099
FriOI	GRGCYC	2 cut(s)	304, 1107
Fsp4HI	GCNGC	2 cut(s)	180, 838
FspBI	CTAG	3 cut(s)	50, 273, 1062
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	2 cut(s)	180, 838
HaeIII	GGCC	2 cut(s)	538, 683
HapII	CCGG	4 cut(s)	129, 543, 653, 1047
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	3 cut(s)	95, 239, 679
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	1144
HindII	GTYRAC	1 cut(s)	1144
HinfI	GANTC	3 cut(s)	32, 436, 894
HpaII	CCGG	4 cut(s)	129, 543, 653, 1047
HphI	GGTGA	3 cut(s)	913, 1061, 1180
Hpy166II	GTNNAC	5 cut(s)	469, 710, 1052, 1144, 1188
Hpy188I	TCNGA	1 cut(s)	107
Hpy188III	TCNNGA	8 cut(s)	40, 236, 305, 580, 602, 659, 801, 940
Hpy8I	GTNNAC	5 cut(s)	469, 710, 1052, 1144, 1188
HpyAV	CCTTC	4 cut(s)	673, 762, 1072, 1077
HpyCH4III	ACNGT	5 cut(s)	121, 137, 418, 1114, 1192
HpyCH4V	TGCA	5 cut(s)	172, 370, 770, 847, 1031
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	5 cut(s)	6, 578, 588, 1056, 1074
Hsp92II	CATG	3 cut(s)	95, 239, 679
HspAI	GCGC	1 cut(s)	243
Ksp22I	TGATCA	1 cut(s)	232
KspI	CCGCGG	1 cut(s)	841
Kzo9I	GATC	3 cut(s)	210, 232, 655
LmnI	GCTCC	3 cut(s)	17, 66, 299
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	3 cut(s)	254, 658, 1018
MaeI	CTAG	3 cut(s)	50, 273, 1062
MaeIII	GTNAC	2 cut(s)	286, 1114
MalI	GATC	3 cut(s)	212, 234, 657
MboI	GATC	3 cut(s)	210, 232, 655
MboII	GAAGA	8 cut(s)	167, 304, 350, 393, 396, 639, 731, 1169
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	2 cut(s)	304, 1107
MluCI	AATT	4 cut(s)	27, 375, 496, 1277
MlyI	GAGTC	1 cut(s)	41
MseI	TTAA	4 cut(s)	264, 693, 887, 932
MslI	CAYNNNNRTG	1 cut(s)	852
MspA1I	CMGCKG	2 cut(s)	364, 840
MspI	CCGG	4 cut(s)	129, 543, 653, 1047
MspR9I	CCNGG	4 cut(s)	544, 653, 951, 1198
MvaI	CCWGG	2 cut(s)	951, 1198
MvnI	CGCG	1 cut(s)	840
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	2 cut(s)	544, 653
NdeII	GATC	3 cut(s)	210, 232, 655
NheI	GCTAGC	1 cut(s)	49
NlaIII	CATG	3 cut(s)	95, 239, 679
NlaIV	GGNNCC	1 cut(s)	657
NspV	TTCGAA	1 cut(s)	85
PagI	TCATGA	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	436, 894
PflMI	CCANNNNNTGG	2 cut(s)	492, 1239
PfoI	TCCNGGA	2 cut(s)	651, 949
PinAI	ACCGGT	1 cut(s)	1046
PkrI	GCNGC	2 cut(s)	181, 839
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp124BI	GAGCTC	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	949, 1196
PspGI	CCWGG	2 cut(s)	949, 1196
PspN4I	GGNNCC	1 cut(s)	657
PspPI	GGNCC	1 cut(s)	537
PsuI	RGATCY	1 cut(s)	655
PvuII	CAGCTG	1 cut(s)	364
RsaI	GTAC	3 cut(s)	709, 986, 1131
RsaNI	GTAC	3 cut(s)	708, 985, 1130
RseI	CAYNNNNRTG	1 cut(s)	852
SacI	GAGCTC	1 cut(s)	304
SacII	CCGCGG	1 cut(s)	841
SaqAI	TTAA	4 cut(s)	264, 693, 887, 932
SatI	GCNGC	2 cut(s)	180, 838
Sau3AI	GATC	3 cut(s)	210, 232, 655
Sau96I	GGNCC	1 cut(s)	537
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	4 cut(s)	544, 653, 951, 1198
SduI	GDGCHC	2 cut(s)	304, 1107
SfaNI	GCATC	3 cut(s)	254, 658, 1018
Sfr303I	CCGCGG	1 cut(s)	841
SfuI	TTCGAA	1 cut(s)	85
SgrAI	CRCCGGYG	1 cut(s)	1046
SgrBI	CCGCGG	1 cut(s)	841
SmiMI	CAYNNNNRTG	1 cut(s)	852
SmlI	CTYRAG	3 cut(s)	97, 303, 600
SmoI	CTYRAG	3 cut(s)	97, 303, 600
SpeI	ACTAGT	1 cut(s)	1061
Sse9I	AATT	4 cut(s)	27, 375, 496, 1277
SsiI	CCGC	5 cut(s)	182, 743, 838, 840, 1226
SspI	AATATT	2 cut(s)	161, 913
SspMI	CTAG	3 cut(s)	50, 273, 1062
SstI	GAGCTC	1 cut(s)	304
StyD4I	CCNGG	4 cut(s)	542, 651, 949, 1196
StyI	CCWWGG	1 cut(s)	924
TaaI	ACNGT	5 cut(s)	121, 137, 418, 1114, 1192
TaqI	TCGA	2 cut(s)	85, 852
TasI	AATT	4 cut(s)	27, 375, 496, 1277
TatI	WGTACW	2 cut(s)	707, 1129
TauI	GCSGC	1 cut(s)	840
TfiI	GAWTC	2 cut(s)	436, 894
Tru1I	TTAA	4 cut(s)	264, 693, 887, 932
Tru9I	TTAA	4 cut(s)	264, 693, 887, 932
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	5 cut(s)	39, 168, 310, 692, 993
TspRI	CASTG	1 cut(s)	421
Van91I	CCANNNNNTGG	2 cut(s)	492, 1239
XapI	RAATTY	2 cut(s)	496, 1277
XcmI	CCANNNNNNNNNTGG	2 cut(s)	566, 1240
XspI	CTAG	3 cut(s)	50, 273, 1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.