Rmu_co8440651.1_g000001
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8440651.1
OG0011602
Physical Location & Seq
Reverse (-)
1 .. 976
976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8440651.1_g000001.1.cds

Sequence Viewer

Length: 539 bp
atggagctaacacaagttaagagagatgtccactcatcgtttcgacaccaagcttcgagctactcaatcaaagcggaggatgaggaaactcagctgcagtgggctgccattgagagattgcctacattcagaaggctgaggacctcacttttcgacctcggtgatagcgaaaatggaaaaaccagtggcaaagagtgtgcagggaagaaggtggttgatgttaccaagttgggagcagatgagaggcattttttcattgagaagatcataaagcacattgagcatgataatctgaggctgctacaaaaaatgagagaaaggatagacagagtgaatgtgaaattgccaactgtggaggtgaggtacaagagtttgtgtgtggaagccgagtgtgaagtagtacaaggaaagccgctcccgacgctgtggaactcctttctaagcttgttatcagtttttcgaaaggtaatgtggtgcaagtctcaagatgcaaagattagcgttctcacagacgtcagtggcgtcatcaaaccttcaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

179

Amino Acids

20.57

Weight (kDa)

9.04

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 516
AccBSI CCGCTC 1 cut(s) 415
AciI CCGC 2 cut(s) 74, 413
AcyI GRCGYC 2 cut(s) 513, 522
AfaI GTAC 2 cut(s) 365, 402
AgsI TTSAA 1 cut(s) 537
AluBI AGCT 5 cut(s) 7, 53, 60, 94, 444
AluI AGCT 5 cut(s) 7, 53, 60, 94, 444
Alw26I GTCTC 1 cut(s) 486
ApeKI GCWGC 3 cut(s) 94, 104, 298
AspS9I GGNCC 1 cut(s) 141
AsuHPI GGTGA 2 cut(s) 173, 370
AsuII TTCGAA 1 cut(s) 460
AvaII GGWCC 1 cut(s) 141
BaeI ACNNNNGTAYC 2 cut(s) 355, 388
BbvCI CCTCAGC 1 cut(s) 137
BbvI GCAGC 3 cut(s) 81, 91, 285
BcoDI GTCTC 1 cut(s) 486
BfmI CTRYAG 1 cut(s) 95
BisI GCNGC 4 cut(s) 95, 105, 299, 413
BlsI GCNGC 4 cut(s) 96, 106, 300, 414
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 141
BmsI GCATC 1 cut(s) 478
Bpu10I CCTNAGC 1 cut(s) 137
Bpu14I TTCGAA 1 cut(s) 460
BpuEI CTTGAG 1 cut(s) 468
BsaHI GRCGYC 2 cut(s) 513, 522
BsaJI CCNNGG 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bse1I ACTGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 85
BseMII CTCAG 3 cut(s) 104, 128, 284
BseNI ACTGG 1 cut(s) 183
BseXI GCAGC 3 cut(s) 81, 91, 285
BsgI GTGCAG 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 486
Bsp119I TTCGAA 1 cut(s) 460
Bsp143I GATC 1 cut(s) 264
BspACI CCGC 2 cut(s) 74, 413
BspCNI CTCAG 3 cut(s) 103, 129, 285
BspMAI CTGCAG 1 cut(s) 99
BspT104I TTCGAA 1 cut(s) 460
BsrBI CCGCTC 1 cut(s) 415
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 264
BssNI GRCGYC 2 cut(s) 513, 522
Bst4CI ACNGT 1 cut(s) 352
BstACI GRCGYC 2 cut(s) 513, 522
BstBI TTCGAA 1 cut(s) 460
BstDEI CTNAG 4 cut(s) 90, 137, 293, 440
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 1 cut(s) 486
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 2 cut(s) 280, 421
BstSFI CTRYAG 1 cut(s) 95
BstV1I GCAGC 3 cut(s) 81, 91, 285
BtsCI GGATG 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 3 cut(s) 104, 190, 523
Cfr13I GGNCC 1 cut(s) 141
CseI GACGC 2 cut(s) 430, 511
Csp6I GTAC 2 cut(s) 364, 401
CviAII CATG 1 cut(s) 284
CviQI GTAC 2 cut(s) 364, 401
DdeI CTNAG 4 cut(s) 90, 137, 293, 440
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 141
FaeI CATG 1 cut(s) 287
FaiI YATR 2 cut(s) 269, 285
FatI CATG 1 cut(s) 283
Fnu4HI GCNGC 4 cut(s) 95, 105, 299, 413
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 4 cut(s) 95, 105, 299, 413
GluI GCNGC 4 cut(s) 95, 105, 299, 413
HgaI GACGC 2 cut(s) 430, 511
Hin1I GRCGYC 2 cut(s) 513, 522
Hin1II CATG 1 cut(s) 287
HindIII AAGCTT 2 cut(s) 51, 442
HphI GGTGA 2 cut(s) 173, 370
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 131, 294
Hpy188III TCNNGA 2 cut(s) 418, 485
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 1 cut(s) 424
HpyAV CCTTC 2 cut(s) 126, 202
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 4 cut(s) 97, 200, 477, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 280, 421
HpyF3I CTNAG 4 cut(s) 90, 137, 293, 440
HpySE526I ACGT 1 cut(s) 513
Hsp92I GRCGYC 2 cut(s) 513, 522
Hsp92II CATG 1 cut(s) 287
Kzo9I GATC 1 cut(s) 264
LmnI GCTCC 3 cut(s) 4, 233, 420
LpnPI CCDG 2 cut(s) 186, 196
Lsp1109I GCAGC 3 cut(s) 81, 91, 285
LweI GCATC 1 cut(s) 478
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 1 cut(s) 220
MalI GATC 1 cut(s) 266
MbiI CCGCTC 1 cut(s) 415
MboI GATC 1 cut(s) 264
MboII GAAGA 2 cut(s) 217, 274
MluCI AATT 1 cut(s) 341
MnlI CCTC 9 cut(s) 70, 76, 132, 154, 167, 237, 288, 349, 354
MseI TTAA 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 280, 421
NdeII GATC 1 cut(s) 264
NlaIII CATG 1 cut(s) 287
NmeAIII GCCGAG 1 cut(s) 412
NspV TTCGAA 1 cut(s) 460
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 519
PkrI GCNGC 4 cut(s) 96, 106, 300, 414
PpuMI RGGWCCY 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 141
PspPI GGNCC 1 cut(s) 141
PspPPI RGGWCCY 1 cut(s) 141
PstI CTGCAG 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 94
RsaI GTAC 2 cut(s) 365, 402
RsaNI GTAC 2 cut(s) 364, 401
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 4 cut(s) 95, 105, 299, 413
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 141
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 1 cut(s) 95
SfuI TTCGAA 1 cut(s) 460
SinI GGWCC 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 483
SmoI CTYRAG 1 cut(s) 483
Sse9I AATT 1 cut(s) 341
SsiI CCGC 2 cut(s) 74, 413
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 1 cut(s) 516
TaqI TCGA 4 cut(s) 43, 56, 153, 460
TasI AATT 1 cut(s) 341
TatI WGTACW 1 cut(s) 400
TauI GCSGC 1 cut(s) 415
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 3 cut(s) 104, 190, 523
TseI GCWGC 3 cut(s) 94, 104, 298
TspDTI ATGAA 1 cut(s) 244
TspRI CASTG 3 cut(s) 104, 190, 523
VpaK11BI GGWCC 1 cut(s) 141
ZraI GACGTC 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.