Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011602

Physical Location & Seq

Genomic Coordinates Forward (+)

76939528 .. 76940599

Gene Structure 1072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG593100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGACTTGGCTGCAGAGATAGGAAGAAGTGTCAGGACCTCGTTTCGTGAGCATGCATCGAGTTTCAGGAGCACTGCAGATGTAAGGTCCATAAAGAAGAATGAAGACGATGAAGTAGAGCTGCAGTGGGCCGCCATTGAGAGGTTGCCAACGTTTGAGCGCATTAGGACTTCATTGTTTGATTGCAGCAAAGATGAGAAGGAAGATGAGGCTAGTAACAAGAGTAAGATGGCACAGATTGATGTGTCGAAGCTAGGATCAATGGAGAGGCATGTGGTCATTCAGAAGTTGATCAAGGAAATTGAGGGAGATAACCACCGGCTCTTGCAGAAACTCAGAGAAAGAATAGACAGAGTAGGACTGCAACTGCCGACTGTGGAAGTTCGATACCAGAATTTGTTAGTAGAAGCAGAATATGAAGTAGTTCAAGGAAAACCTCTCCCTACACTATGGAACACCGTTAAAAGCTTATTCTCTGTTATGACTCAGATAGTTGGGTGCAAGCCTCAAGCATACAAGCTAGAAATTCTCAGAGATATCAGTGGCATCATCAAACCATCAAGGATGACTCTATTGCTTGGCCCTCCAGGCTGTGGGAAATCCACTTTATTACAGGCGCTTGCAGGGAAACTTAACCATTCTCTCAAGGTTAATCATTACACTAATCTACTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

225

Amino Acids

25.57

Weight (kDa)

8.91

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	103 - 152	6.5e-06	ABC-transporter N-terminal
ABC_tran	PF00005	177 - 212	1.4e-06	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011602)

Species	Orthologous Gene IDs
malus_domestica	MD09G1044500.v1.1
pyrus_communis	pycom04g16560
rosa_chinensis	RchiOBHm_Chr2g0169401
rosa_multiflora	Rmu_co8440651.1_g000001 Rmu_co8502923.1_g000001 Rmu_sc0019699.1_g000001
rosa_samantha	Rh2BG624000 Rh2BG624200 Rh2BG624300 Rh2BG624400 Rh2CG592300 Rh2CG592600 Rh2CG592900 Rh2CG593100 Rh3BG089500 Rh3DG090500 Rh4BG278600 Rh4CG292700 Rh4CG292800 Rh4CG293900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	593
AciI	CCGC	1 cut(s)	132
AclI	AACGTT	1 cut(s)	152
AclWI	GGATC	1 cut(s)	265
AcsI	RAATTY	2 cut(s)	394, 525
AfiI	CCNNNNNNNGG	2 cut(s)	141, 593
AgsI	TTSAA	1 cut(s)	428
AjnI	CCWGG	1 cut(s)	586
AluBI	AGCT	4 cut(s)	121, 253, 468, 520
AluI	AGCT	4 cut(s)	121, 253, 468, 520
Alw21I	GWGCWC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	265
AoxI	GGCC	2 cut(s)	129, 580
ApeKI	GCWGC	3 cut(s)	11, 121, 186
ApoI	RAATTY	2 cut(s)	394, 525
Asp700I	GAANNNNTTC	1 cut(s)	423
AspLEI	GCGC	2 cut(s)	162, 619
AspS9I	GGNCC	4 cut(s)	36, 87, 129, 581
AvaII	GGWCC	2 cut(s)	36, 87
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	108, 198
BccI	CCATC	2 cut(s)	223, 565
BciT130I	CCWGG	1 cut(s)	588
BclI	TGATCA	1 cut(s)	291
BfaI	CTAG	3 cut(s)	213, 254, 521
BfmI	CTRYAG	3 cut(s)	12, 75, 122
BfoI	RGCGCY	1 cut(s)	620
BglI	GCCNNNNNGGC	1 cut(s)	588
BisI	GCNGC	4 cut(s)	12, 122, 132, 187
BlsI	GCNGC	4 cut(s)	13, 123, 133, 188
Bme1390I	CCNGG	1 cut(s)	588
Bme18I	GGWCC	2 cut(s)	36, 87
BmgT120I	GGNCC	4 cut(s)	36, 87, 129, 581
BmrFI	CCNGG	1 cut(s)	588
BmsI	GCATC	2 cut(s)	65, 555
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	570
BpuEI	CTTGAG	2 cut(s)	492, 629
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 593
Bse118I	RCCGGY	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	588
BseGI	GGATG	1 cut(s)	570
BseLI	CCNNNNNNNGG	2 cut(s)	141, 593
BseMII	CTCAG	3 cut(s)	349, 500, 544
BseXI	GCAGC	2 cut(s)	108, 198
BshFI	GGCC	2 cut(s)	131, 582
BsiHKAI	GWGCWC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	319
BslI	CCNNNNNNNGG	2 cut(s)	141, 593
BsnI	GGCC	2 cut(s)	131, 582
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	257, 291
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	2 cut(s)	131, 582
BspCNI	CTCAG	3 cut(s)	348, 499, 543
BspMAI	CTGCAG	3 cut(s)	16, 79, 126
BspPI	GGATC	1 cut(s)	265
BsrFI	RCCGGY	1 cut(s)	318
BssAI	RCCGGY	1 cut(s)	318
BssMI	GATC	2 cut(s)	257, 291
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	3 cut(s)	376, 460, 672
BstC8I	GCNNGC	3 cut(s)	54, 503, 621
BstDEI	CTNAG	3 cut(s)	335, 486, 530
BstF5I	GGATG	1 cut(s)	570
BstH2I	RGCGCY	1 cut(s)	620
BstHHI	GCGC	2 cut(s)	162, 619
BstKTI	GATC	2 cut(s)	260, 294
BstMBI	GATC	2 cut(s)	257, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	588
BstNI	CCWGG	1 cut(s)	588
BstNSI	RCATGY	2 cut(s)	56, 275
BstSCI	CCNGG	1 cut(s)	586
BstSFI	CTRYAG	3 cut(s)	12, 75, 122
BstV1I	GCAGC	2 cut(s)	108, 198
BstV2I	GAAGAC	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	131, 582
BtsCI	GGATG	1 cut(s)	570
BtsI	GCAGTG	2 cut(s)	72, 131
BtsIMutI	CAGTG	3 cut(s)	72, 131, 547
Cac8I	GCNNGC	3 cut(s)	54, 503, 621
CfoI	GCGC	2 cut(s)	162, 619
Cfr10I	RCCGGY	1 cut(s)	318
Cfr13I	GGNCC	4 cut(s)	36, 87, 129, 581
CviAII	CATG	2 cut(s)	53, 272
DdeI	CTNAG	3 cut(s)	335, 486, 530
DpnI	GATC	2 cut(s)	259, 293
DpnII	GATC	2 cut(s)	257, 291
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	2 cut(s)	36, 87
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	586
EcoRV	GATATC	1 cut(s)	538
EcoT22I	ATGCAT	1 cut(s)	58
FaeI	CATG	2 cut(s)	56, 275
FaiI	YATR	7 cut(s)	54, 92, 273, 417, 451, 482, 514
FatI	CATG	2 cut(s)	52, 271
FbaI	TGATCA	1 cut(s)	291
Fnu4HI	GCNGC	4 cut(s)	12, 122, 132, 187
FokI	GGATG	1 cut(s)	577
Fsp4HI	GCNGC	4 cut(s)	12, 122, 132, 187
FspBI	CTAG	3 cut(s)	213, 254, 521
GlaI	GCGC	2 cut(s)	161, 618
GluI	GCNGC	4 cut(s)	12, 122, 132, 187
GsuI	CTGGAG	1 cut(s)	570
HaeII	RGCGCY	1 cut(s)	620
HaeIII	GGCC	2 cut(s)	131, 582
HapII	CCGG	1 cut(s)	319
HhaI	GCGC	2 cut(s)	162, 619
Hin1II	CATG	2 cut(s)	56, 275
Hin6I	GCGC	2 cut(s)	160, 617
HinP1I	GCGC	2 cut(s)	160, 617
HindIII	AAGCTT	1 cut(s)	466
HinfI	GANTC	2 cut(s)	484, 568
HpaII	CCGG	1 cut(s)	319
Hpy188I	TCNGA	4 cut(s)	285, 338, 489, 533
Hpy188III	TCNNGA	3 cut(s)	34, 47, 67
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	3 cut(s)	376, 460, 672
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	9 cut(s)	14, 56, 77, 124, 186, 328, 364, 501, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	588
HpyF3I	CTNAG	3 cut(s)	335, 486, 530
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	56, 275
HspAI	GCGC	2 cut(s)	160, 617
Ksp22I	TGATCA	1 cut(s)	291
Kzo9I	GATC	2 cut(s)	257, 291
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	8 cut(s)	19, 52, 332, 404, 573, 599, 600, 609
Lsp1109I	GCAGC	2 cut(s)	108, 198
LweI	GCATC	2 cut(s)	65, 555
MaeI	CTAG	3 cut(s)	213, 254, 521
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	2 cut(s)	259, 293
MboI	GATC	2 cut(s)	257, 291
MboII	GAAGA	4 cut(s)	36, 109, 116, 215
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	3 cut(s)	300, 394, 525
MlyI	GAGTC	2 cut(s)	478, 562
MnlI	CCTC	8 cut(s)	49, 135, 202, 261, 298, 447, 516, 594
Mph1103I	ATGCAT	1 cut(s)	58
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	4 cut(s)	462, 633, 651, 676
MspI	CCGG	1 cut(s)	319
MspR9I	CCNGG	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	588
MwoI	GCNNNNNNNGC	1 cut(s)	588
NdeII	GATC	2 cut(s)	257, 291
NlaIII	CATG	2 cut(s)	56, 275
NsiI	ATGCAT	1 cut(s)	58
NspI	RCATGY	2 cut(s)	56, 275
PaeI	GCATGC	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	423
PflMI	CCANNNNNTGG	1 cut(s)	593
PkrI	GCNGC	4 cut(s)	13, 123, 133, 188
PleI	GAGTC	2 cut(s)	478, 562
PpsI	GAGTC	2 cut(s)	478, 562
PpuMI	RGGWCCY	1 cut(s)	36
Psp1406I	AACGTT	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	586
PspPI	GGNCC	4 cut(s)	36, 87, 129, 581
PspPPI	RGGWCCY	1 cut(s)	36
PstI	CTGCAG	3 cut(s)	16, 79, 126
SaqAI	TTAA	4 cut(s)	462, 633, 651, 676
SatI	GCNGC	4 cut(s)	12, 122, 132, 187
Sau3AI	GATC	2 cut(s)	257, 291
Sau96I	GGNCC	4 cut(s)	36, 87, 129, 581
SchI	GAGTC	2 cut(s)	478, 562
ScrFI	CCNGG	1 cut(s)	588
SduI	GDGCHC	1 cut(s)	74
SfaNI	GCATC	2 cut(s)	65, 555
SfcI	CTRYAG	3 cut(s)	12, 75, 122
SinI	GGWCC	2 cut(s)	36, 87
SmlI	CTYRAG	2 cut(s)	507, 644
SmoI	CTYRAG	2 cut(s)	507, 644
SphI	GCATGC	1 cut(s)	56
Sse9I	AATT	3 cut(s)	300, 394, 525
SsiI	CCGC	1 cut(s)	132
SspMI	CTAG	3 cut(s)	213, 254, 521
StyD4I	CCNGG	1 cut(s)	586
TaaI	ACNGT	3 cut(s)	376, 460, 672
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	3 cut(s)	59, 248, 385
TasI	AATT	3 cut(s)	300, 394, 525
TauI	GCSGC	1 cut(s)	134
Tru1I	TTAA	4 cut(s)	462, 633, 651, 676
Tru9I	TTAA	4 cut(s)	462, 633, 651, 676
TscAI	CASTG	3 cut(s)	79, 131, 547
TseI	GCWGC	3 cut(s)	11, 121, 186
TspDTI	ATGAA	4 cut(s)	117, 126, 162, 432
TspRI	CASTG	3 cut(s)	79, 131, 547
Van91I	CCANNNNNTGG	1 cut(s)	593
VpaK11BI	GGWCC	2 cut(s)	36, 87
XapI	RAATTY	2 cut(s)	394, 525
XceI	RCATGY	2 cut(s)	56, 275
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	3 cut(s)	213, 254, 521
Zsp2I	ATGCAT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.