Rh2BG624300

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011602
Physical Location & Seq
Forward (+)
84617475 .. 84622746
5272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG624300.1

Sequence Viewer

Length: 582 bp
ATGAAAGAAGTTGCTAGAAGGGAGAAACAAGCTGGTATTGTCCCAGAACCAGATATTGACACTTATATGAAGGTGGTTTCTCAAAAGGATCAAGCAAAGTACTGGTACCATAAAGACCAACCATACAGTTATGTTAGTGTTGATGAGTTCGTAAGTATGTTTAAGGACTTCCATGTCGGGAAGAAGCTTGAAGAGGAACTTTCCAAGCCTTTTGAGCAATCAGAGTGCCATAAGCATGCTTTATCATACAACATTTACTCACTGAGAAAATGGGAACTATTCAAAGCATGCCTTTCTAGAGAATGGCTTCTCATGAAGCGAAACTCTTTTGTTCATGTATTCCAATCAGTACAGAACAATGACCTAGTTAGAGAACACAGCTTACCAGCACAAGGCTCAAAGAGATTGGATTTTCCTACTCGTTTCCCACAAAATGGATGGGAGCAATTTAAAGCATGTCTGTGGAAGCGACATCTCTCCTACTGGAGAAATCCAAAATATAACGTGGGGCGATTGTTAATCACTGCTGCATCCTCTTTGATATTTGGAGCACTTCTTTGGCAGAAAGGACAGAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

193

Amino Acids

23.03

Weight (kDa)

9.48

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 148 - 188 1.4e-06 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
Acc65I GGTACC 1 cut(s) 105
AccB1I GGYRCC 1 cut(s) 105
AccB7I CCANNNNNTGG 1 cut(s) 434
AclWI GGATC 1 cut(s) 96
AfaI GTAC 3 cut(s) 101, 107, 351
AfiI CCNNNNNNNGG 2 cut(s) 392, 434
AgsI TTSAA 2 cut(s) 191, 283
AluBI AGCT 3 cut(s) 32, 187, 381
AluI AGCT 3 cut(s) 32, 187, 381
Alw21I GWGCWC 1 cut(s) 553
AlwI GGATC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 527
Asp700I GAANNNNTTC 1 cut(s) 306
Asp718I GGTACC 1 cut(s) 105
BanI GGYRCC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 1 cut(s) 514
BccI CCATC 1 cut(s) 432
BfaI CTAG 3 cut(s) 15, 297, 365
BisI GCNGC 1 cut(s) 528
BlsI GCNGC 1 cut(s) 529
BmcAI AGTACT 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 107
BmsI GCATC 1 cut(s) 539
BpmI CTGGAG 1 cut(s) 505
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 434
Bse1I ACTGG 2 cut(s) 107, 488
BseGI GGATG 2 cut(s) 443, 530
BseLI CCNNNNNNNGG 2 cut(s) 392, 434
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 2 cut(s) 107, 488
BseXI GCAGC 1 cut(s) 514
BshNI GGYRCC 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 553
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 392, 434
BsmFI GGGAC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 553
Bsp143I GATC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 255
BspHI TCATGA 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 107
BspPI GGATC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 105
BsrI ACTGG 2 cut(s) 107, 488
BssMI GATC 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 237, 289
BstDEI CTNAG 1 cut(s) 263
BstF5I GGATG 2 cut(s) 443, 530
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNSI RCATGY 3 cut(s) 239, 291, 459
BstV1I GCAGC 1 cut(s) 514
BtsCI GGATG 2 cut(s) 443, 530
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 2 cut(s) 260, 522
Cac8I GCNNGC 2 cut(s) 237, 289
CciI TCATGA 1 cut(s) 312
Csp6I GTAC 3 cut(s) 100, 106, 350
CviAII CATG 6 cut(s) 173, 236, 288, 313, 335, 456
CviJI RGCY 6 cut(s) 32, 187, 208, 307, 381, 396
CviKI_1 RGCY 6 cut(s) 32, 187, 208, 307, 381, 396
CviQI GTAC 3 cut(s) 100, 106, 350
DdeI CTNAG 1 cut(s) 263
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DraI TTTAAA 1 cut(s) 451
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
FaeI CATG 6 cut(s) 176, 239, 291, 316, 338, 459
FalI AAGNNNNNCTT 4 cut(s) 183, 215, 276, 308
FaqI GGGAC 1 cut(s) 26
FatI CATG 6 cut(s) 172, 235, 287, 312, 334, 455
Fnu4HI GCNGC 1 cut(s) 528
FokI GGATG 2 cut(s) 450, 517
Fsp4HI GCNGC 1 cut(s) 528
FspBI CTAG 3 cut(s) 15, 297, 365
GluI GCNGC 1 cut(s) 528
GsuI CTGGAG 1 cut(s) 505
Hin1II CATG 6 cut(s) 176, 239, 291, 316, 338, 459
HindIII AAGCTT 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 3 cut(s) 178, 297, 313
HpyAV CCTTC 2 cut(s) 12, 64
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 1 cut(s) 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 1 cut(s) 263
HpySE526I ACGT 1 cut(s) 504
Hsp92II CATG 6 cut(s) 176, 239, 291, 316, 338, 459
KpnI GGTACC 1 cut(s) 109
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 2 cut(s) 442, 548
LpnPI CCDG 6 cut(s) 18, 57, 63, 88, 399, 469
Lsp1109I GCAGC 1 cut(s) 514
LweI GCATC 1 cut(s) 539
MaeI CTAG 3 cut(s) 15, 297, 365
MaeII ACGT 1 cut(s) 504
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 193, 203
MhlI GDGCHC 1 cut(s) 553
MluCI AATT 1 cut(s) 446
MnlI CCTC 2 cut(s) 187, 544
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 3 cut(s) 162, 450, 518
MslI CAYNNNNRTG 3 cut(s) 65, 234, 460
MwoI GCNNNNNNNGC 1 cut(s) 214
NdeII GATC 1 cut(s) 88
NlaIII CATG 6 cut(s) 176, 239, 291, 316, 338, 459
NlaIV GGNNCC 1 cut(s) 107
NspI RCATGY 3 cut(s) 239, 291, 459
PaeI GCATGC 2 cut(s) 239, 291
PagI TCATGA 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 306
PflMI CCANNNNNTGG 1 cut(s) 434
PkrI GCNGC 1 cut(s) 529
PspN4I GGNNCC 1 cut(s) 107
PsrI GAACNNNNNNTAC 2 cut(s) 366, 398
RsaI GTAC 3 cut(s) 101, 107, 351
RsaNI GTAC 3 cut(s) 100, 106, 350
RseI CAYNNNNRTG 3 cut(s) 65, 234, 460
SaqAI TTAA 3 cut(s) 162, 450, 518
SatI GCNGC 1 cut(s) 528
Sau3AI GATC 1 cut(s) 88
ScaI AGTACT 1 cut(s) 101
SduI GDGCHC 1 cut(s) 553
SetI ASST 6 cut(s) 34, 75, 189, 366, 383, 507
SfaNI GCATC 1 cut(s) 539
SmiMI CAYNNNNRTG 3 cut(s) 65, 234, 460
SphI GCATGC 2 cut(s) 239, 291
Sse9I AATT 1 cut(s) 446
SspMI CTAG 3 cut(s) 15, 297, 365
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 1 cut(s) 507
TasI AATT 1 cut(s) 446
TatI WGTACW 2 cut(s) 99, 349
Tru1I TTAA 3 cut(s) 162, 450, 518
Tru9I TTAA 3 cut(s) 162, 450, 518
TscAI CASTG 2 cut(s) 267, 529
TseI GCWGC 1 cut(s) 527
TspDTI ATGAA 4 cut(s) 17, 83, 323, 329
TspRI CASTG 2 cut(s) 267, 529
Van91I CCANNNNNTGG 1 cut(s) 434
XbaI TCTAGA 1 cut(s) 296
XceI RCATGY 3 cut(s) 239, 291, 459
XcmI CCANNNNNNNNNTGG 1 cut(s) 435
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 3 cut(s) 15, 297, 365
ZrmI AGTACT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.