Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0011602

Physical Location & Seq

Genomic Coordinates Reverse (-)

45269218 .. 45276546

Gene Structure 7329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG278600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2574 bp

ATGGCTCAGTTGGCAGGAGCAGATGAAATTGAGTCTTTCAGGATAGAGCTAGCAGAGATTGGGAGGAGCATTAGAGCCTCCTTTCGAAGCCATGCCTCAAGTTTCCGAAGCACCTCTACTGTCAATGCCGGAGACAGTAGAATGGACGATGATGAAGAATATTATGACTTGCAATGGGCTGCAGTTGAGAGACTACCAACTTTTGAGAGGATCACATCAGCTTTGTTTGATGATCATGATGGCGCATCGGCAAAAGGAGATGTTAAGGGGACTAGGGTGGTTGATGTTACGAAGATTGGAGCTCAAGAACGGCGTGTTTTCATAGAGAAGCTCATCAAACATATTGAGAATGATAATCTTCAGCTGTTGCAGAAAATTAGAAGAAGAATAGACAAGGTTGGTGTGAAGTTGCCCACTGTTGAAGTAAGATACAAGAATCTTTGTGTGGAAGCAGAGTGTAAGGTAGTTCACGGCAAGCCCCTCCCCACTCTATGGAATTCTCTAAAGAGTTTGATTCCGAATGACCTTATTGCTTGGCCCTCCGGGTTGTGGCAAAACCACATTACTGATGGCGCTCTCAGGAAAGCTAAGCCATTCTCTCAAGAGATTATGATGGAAGTTAGTAGAAGAGAAAAGCAGGCAGGAATAGTCCCGGATTCTGATGTAGATGCTTACATGAAGGCCATATCTGTTAATGGACTGAAAAGTACACTTCAAACTGACTATATTCTAAAGGTTATCTCTAGAAAAGATCAAGCACAGTTTTGGGACGGCACAGAAAAACCATATAGCTACTTTTCTGTTGATCAGTTCATTGAGAAATTCAAGGATTGCCATCTTGGCAGGAAGCTAGATGTTCTTCCGCCATTTCCTTCTACTCTTTGCTATGCACCTAACATCGATATCCATGTTTCGGTGTCTGGAAACACAACTCTTGGGAAACAAGTGCTGGAAAGCCGCGGATTGCATTTCGATGACTATTTTTATTGGATATCAGTTGGTGCTTTAATGGGATTCACATTACTATTCAATATTGGTTTCACCTTGGCTTTAACTTTCTTGAAGTCTCCTGGAAAGTCCCTTTCTCTTATTTCTTATGAAAAGTACCATCAACTACAAGGACAAAGAGACGACAGAGGCAGTTTAGATGCAGAGGGAAAATCCACCGGTGAACCTAAGACTAGTGTAGAACCTAAGAAGGGAAGGATGGTTTTACCATTTGAGCCCCTAACTGTTACATTCCAAGATGTACAATACTATGTTGACACCCCTTTGGAAATGAGAAAGGGAGGCTTTGAGCATAACAAGCTCCAGCTCCTATCTGATATTACAGGTGCATTCAGGCCAGGTGTTCTGACAGCATTAATGGGTGTCAGCGGAGCTGGCAAAACAACTCTCATGGATGTTCTTTGTGGACGAAAAACCGGTGGTACAATTGAAGGAGAAATAAGAATCAGTGGGTATCCTAAGGTTCAAGACACATTTGCAAGGATATCAGGCTACTGTGAGCAAAATGACATACATTCTCCACAAATAACCGTGGAAGAATCAGTAGTATATTCTGCTTGGTTGCGGCTCCCGTCTCAGATTGATTCAAAGACCAAAGCAGAATTTGTAAACGAGGTTCTTGAAACTATTGAACTTGATGGGATTAAAGATTCCTTGGTAGGCATGGCAGGAGTTGGTGGTTTATCCACTGAGCAACGTAAACGGTTGACCCTAGCTGTGGAACTTGTAGCCAATCCATCTATCATGTTCATGGATGAACCAACTTCTGGTTTAGATGCACGGGCGGCTGCTATCGTTATGAGAGCAGTGAAGAATGTTGTTACAACAGGAAGAACAGTTGTTTGCACCATCCATCAACCAAGTATTGACATTTTTGAGGCATTTGATGAGTTGATTCTCATGAAAATTGGAGGACGCATAATCTATTCTGGCCAACTTGGACGGCACTCAACCATGGTTATTGAGTATCTTGAGAGTATCCCTGGGGTGCCCTCAATCAAAGACAATTACAATCCGGCAACATGGATGTTAGAAGTTACTTCAAAATCTGCAGAAGCTGACCTTGGTATAGATTTTGCACAAATTTATAGGGAATCGGCCTTGTATGAGAAGAACAAGGAGTTAGTCAAGCAAGCGAGTTCACCGTCTCCTGGTTCAAAGGATTTGGAGTTTCCTACCCGCTATCCACAAAATGGTTGGGGGCAGTTCAAAGCATGCTTTTGGAAACAGAATTTGTCTTATTGGAGAAGTCCCTCGTATAATCTGGCACGGATCCTTTTCATGTGTTTCTCAGCTGTGTTGTTTGGAACACTGTACTGGAATCAAGGAGAGAAAATAAATAACCAGCAGGAGCTCTTCAATGTGTTTGGTTCAATGTTCGTGGCAATAATCTTCTTTGGCATTTACAATAGCACAACAGTTCTACCATTTGTTGCAACAGAACGGAATGTTCTGTATCGAGAAAGATATGCAGGAATGTTCTCTTCATGGGCCTATTCATTCGCACAGGTTCAGATCTTTTCGACTAAATTTCCTCATGAACTCATCCATAAACTCTGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0008150 GO:0008643 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0033231 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

857

Amino Acids

96.32

Weight (kDa)

6.48

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	117 - 166	1e-05	ABC-transporter N-terminal
PDR_assoc	PF08370	307 - 361	1.9e-25	Plant PDR ABC transporter associated
ABC_tran	PF00005	440 - 592	7.3e-21	ABC transporter
ABC2_membrane	PF01061	738 - 840	7.1e-23	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011602)

Species	Orthologous Gene IDs
malus_domestica	MD09G1044500.v1.1
pyrus_communis	pycom04g16560
rosa_chinensis	RchiOBHm_Chr2g0169401
rosa_multiflora	Rmu_co8440651.1_g000001 Rmu_co8502923.1_g000001 Rmu_sc0019699.1_g000001
rosa_samantha	Rh2BG624000 Rh2BG624200 Rh2BG624300 Rh2BG624400 Rh2CG592300 Rh2CG592600 Rh2CG592900 Rh2CG593100 Rh3BG089500 Rh3DG090500 Rh4BG278600 Rh4CG292700 Rh4CG292800 Rh4CG293900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1996
AccB7I	CCANNNNNTGG	3 cut(s)	492, 1775, 2201
AccII	CGCG	1 cut(s)	960
AciI	CCGC	7 cut(s)	863, 958, 960, 1377, 1573, 1793, 2188
AclWI	GGATC	3 cut(s)	218, 2275, 2288
AcoI	YGGCCR	1 cut(s)	1939
AcsI	RAATTY	6 cut(s)	496, 821, 1610, 2091, 2239, 2537
AcuI	CTGAAG	1 cut(s)	344
AfaI	GTAC	5 cut(s)	709, 1106, 1251, 1432, 2324
AfiI	CCNNNNNNNGG	8 cut(s)	492, 549, 913, 1199, 1726, 1775, 2159, 2201
AgeI	ACCGGT	2 cut(s)	1166, 1424
AhlI	ACTAGT	1 cut(s)	1181
AjnI	CCWGG	4 cut(s)	1069, 1345, 1990, 2158
AjuI	GAANNNNNNNTTGG	2 cut(s)	2055, 2087
Alw21I	GWGCWC	2 cut(s)	304, 2364
Alw26I	GTCTC	6 cut(s)	126, 184, 1071, 1122, 1587, 2160
AlwI	GGATC	3 cut(s)	218, 2275, 2288
AlwNI	CAGNNNCTG	1 cut(s)	2066
AoxI	GGCC	6 cut(s)	536, 681, 1343, 1939, 2106, 2499
ApeKI	GCWGC	2 cut(s)	179, 1796
ApoI	RAATTY	6 cut(s)	496, 821, 1610, 2091, 2239, 2537
AseI	ATTAAT	1 cut(s)	1364
AsiGI	ACCGGT	2 cut(s)	1166, 1424
AspLEI	GCGC	2 cut(s)	245, 575
AspS9I	GGNCC	2 cut(s)	537, 2499
AsuC2I	CCSGG	2 cut(s)	544, 653
AsuHPI	GGTGA	3 cut(s)	1033, 1181, 2142
AsuII	TTCGAA	1 cut(s)	85
AsuNHI	GCTAGC	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	1467
BaeGI	GKGCMC	1 cut(s)	2001
BalI	TGGCCA	1 cut(s)	1941
BamHI	GGATCC	1 cut(s)	2280
BanI	GGYRCC	1 cut(s)	1996
BanII	GRGCYC	3 cut(s)	304, 1227, 2364
BarI	GAAGNNNNNNTAC	2 cut(s)	100, 132
Bbv12I	GWGCWC	2 cut(s)	304, 2364
BbvI	GCAGC	2 cut(s)	166, 1783
BceAI	ACGGC	4 cut(s)	326, 487, 787, 1967
BciT130I	CCWGG	4 cut(s)	1071, 1347, 1992, 2160
BciVI	GTATCC	2 cut(s)	1473, 1997
BclI	TGATCA	2 cut(s)	232, 805
BcnI	CCSGG	2 cut(s)	544, 653
BcoDI	GTCTC	6 cut(s)	126, 184, 1071, 1122, 1587, 2160
BcuI	ACTAGT	1 cut(s)	1181
BfaI	CTAG	6 cut(s)	50, 273, 744, 851, 1182, 1721
BfmI	CTRYAG	2 cut(s)	180, 2058
BfoI	RGCGCY	1 cut(s)	576
BfuI	GTATCC	2 cut(s)	1473, 1997
BglI	GCCNNNNNGGC	1 cut(s)	840
BglII	AGATCT	1 cut(s)	2523
BisI	GCNGC	5 cut(s)	180, 958, 1574, 1794, 1797
BlpI	GCTNAGC	1 cut(s)	588
BlsI	GCNGC	5 cut(s)	181, 959, 1575, 1795, 1798
Bme1390I	CCNGG	6 cut(s)	544, 653, 1071, 1347, 1992, 2160
BmgT120I	GGNCC	2 cut(s)	537, 2499
BmiI	GGNNCC	3 cut(s)	1577, 1998, 2282
BmrFI	CCNGG	6 cut(s)	544, 653, 1071, 1347, 1992, 2160
BmsI	GCATC	4 cut(s)	254, 658, 1138, 1774
BmtI	GCTAGC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	1295
Bpu1102I	GCTNAGC	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	85
BpuEI	CTTGAG	4 cut(s)	82, 288, 585, 2000
BpuMI	CCSGG	2 cut(s)	544, 653
Bsa29I	ATCGAT	1 cut(s)	900
BsaBI	GATNNNNATC	1 cut(s)	834
BsaJI	CCNNGG	8 cut(s)	958, 1044, 1539, 1662, 1962, 1990, 1991, 2071
BsaWI	WCCGGW	2 cut(s)	1166, 1424
Bsc4I	CCNNNNNNNGG	8 cut(s)	492, 549, 913, 1199, 1726, 1775, 2159, 2201
Bse118I	RCCGGY	2 cut(s)	1166, 1424
Bse1I	ACTGG	1 cut(s)	2330
Bse21I	CCTNAGG	1 cut(s)	1467
Bse3DI	GCAATG	1 cut(s)	179
Bse8I	GATNNNNATC	1 cut(s)	834
BseBI	CCWGG	4 cut(s)	1071, 1347, 1992, 2160
BseCI	ATCGAT	1 cut(s)	900
BseDI	CCNNGG	8 cut(s)	958, 1044, 1539, 1662, 1962, 1990, 1991, 2071
BseGI	GGATG	6 cut(s)	1212, 1408, 1768, 1857, 2040, 2553
BseJI	GATNNNNATC	1 cut(s)	834
BseLI	CCNNNNNNNGG	8 cut(s)	492, 549, 913, 1199, 1726, 1775, 2159, 2201
BseMI	GCAATG	1 cut(s)	179
BseMII	CTCAG	5 cut(s)	20, 592, 1598, 1689, 2313
BseNI	ACTGG	1 cut(s)	2330
BseRI	GAGGAG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	2001
BseXI	GCAGC	2 cut(s)	166, 1783
Bsh1236I	CGCG	1 cut(s)	960
BshFI	GGCC	6 cut(s)	538, 683, 1345, 1941, 2108, 2501
BshNI	GGYRCC	1 cut(s)	1996
BshTI	ACCGGT	2 cut(s)	1166, 1424
BshVI	ATCGAT	1 cut(s)	900
BsiHKAI	GWGCWC	2 cut(s)	304, 2364
BsiSI	CCGG	6 cut(s)	129, 543, 653, 1167, 1425, 2024
BslFI	GGGAC	5 cut(s)	283, 635, 782, 1063, 2244
BslI	CCNNNNNNNGG	8 cut(s)	492, 549, 913, 1199, 1726, 1775, 2159, 2201
BsmAI	GTCTC	6 cut(s)	126, 184, 1071, 1122, 1587, 2160
BsmBI	CGTCTC	3 cut(s)	1122, 1587, 2160
BsmFI	GGGAC	5 cut(s)	283, 635, 782, 1063, 2244
BsmI	GAATGC	1 cut(s)	1337
BsnI	GGCC	6 cut(s)	538, 683, 1345, 1941, 2108, 2501
Bsp119I	TTCGAA	1 cut(s)	85
Bsp1286I	GDGCHC	4 cut(s)	304, 1227, 2001, 2364
Bsp1407I	TGTACA	1 cut(s)	1249
Bsp143I	GATC	6 cut(s)	210, 232, 751, 805, 2280, 2523
Bsp1720I	GCTNAGC	1 cut(s)	588
Bsp19I	CCATGG	1 cut(s)	1962
BspACI	CCGC	7 cut(s)	863, 958, 960, 1377, 1573, 1793, 2188
BspANI	GGCC	6 cut(s)	538, 683, 1345, 1941, 2108, 2501
BspCNI	CTCAG	5 cut(s)	19, 591, 1597, 1690, 2312
BspDI	ATCGAT	1 cut(s)	900
BspFNI	CGCG	1 cut(s)	960
BspHI	TCATGA	4 cut(s)	235, 1908, 2545, 2570
BspLI	GGNNCC	3 cut(s)	1577, 1998, 2282
BspMAI	CTGCAG	2 cut(s)	184, 2062
BspOI	GCTAGC	1 cut(s)	53
BspPI	GGATC	3 cut(s)	218, 2275, 2288
BspQI	GCTCTTC	1 cut(s)	2369
BspT104I	TTCGAA	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	1996
BsrDI	GCAATG	1 cut(s)	179
BsrFI	RCCGGY	2 cut(s)	1166, 1424
BsrGI	TGTACA	1 cut(s)	1249
BsrI	ACTGG	1 cut(s)	2330
BssAI	RCCGGY	2 cut(s)	1166, 1424
BssECI	CCNNGG	8 cut(s)	958, 1044, 1539, 1662, 1962, 1990, 1991, 2071
BssMI	GATC	6 cut(s)	210, 232, 751, 805, 2280, 2523
BssT1I	CCWWGG	4 cut(s)	1044, 1662, 1962, 2071
Bst2UI	CCWGG	4 cut(s)	1071, 1347, 1992, 2160
Bst6I	CTCTTC	3 cut(s)	622, 2369, 2497
BstAUI	TGTACA	1 cut(s)	1249
BstBI	TTCGAA	1 cut(s)	85
BstC8I	GCNNGC	6 cut(s)	51, 476, 639, 1384, 2142, 2224
BstDEI	CTNAG	9 cut(s)	6, 578, 588, 1176, 1194, 1467, 1584, 1698, 2299
BstDSI	CCRYGG	3 cut(s)	958, 1539, 1962
BstF5I	GGATG	6 cut(s)	1212, 1408, 1768, 1857, 2040, 2553
BstFNI	CGCG	1 cut(s)	960
BstH2I	RGCGCY	1 cut(s)	576
BstHHI	GCGC	2 cut(s)	245, 575
BstKTI	GATC	6 cut(s)	213, 235, 754, 808, 2283, 2526
BstMAI	GTCTC	6 cut(s)	126, 184, 1071, 1122, 1587, 2160
BstMBI	GATC	6 cut(s)	210, 232, 751, 805, 2280, 2523
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 840, 1306, 1383, 1793
BstNI	CCWGG	4 cut(s)	1071, 1347, 1992, 2160
BstNSI	RCATGY	1 cut(s)	2226
BstSCI	CCNGG	6 cut(s)	542, 651, 1069, 1345, 1990, 2158
BstSFI	CTRYAG	2 cut(s)	180, 2058
BstSLI	GKGCMC	1 cut(s)	2001
BstUI	CGCG	1 cut(s)	960
BstV1I	GCAGC	2 cut(s)	166, 1783
BstX2I	RGATCY	2 cut(s)	2280, 2523
BstYI	RGATCY	2 cut(s)	2280, 2523
Bsu15I	ATCGAT	1 cut(s)	900
Bsu36I	CCTNAGG	1 cut(s)	1467
BsuI	GTATCC	2 cut(s)	1473, 1997
BsuRI	GGCC	6 cut(s)	538, 683, 1345, 1941, 2108, 2501
BsuTUI	ATCGAT	1 cut(s)	900
BtgI	CCRYGG	3 cut(s)	958, 1539, 1962
BtsCI	GGATG	6 cut(s)	1212, 1408, 1768, 1857, 2040, 2553
BtsI	GCAGTG	1 cut(s)	1821
BtsIMutI	CAGTG	5 cut(s)	414, 1462, 1695, 1821, 2318
Cac8I	GCNNGC	6 cut(s)	51, 476, 639, 1384, 2142, 2224
CaiI	CAGNNNCTG	1 cut(s)	2066
CciI	TCATGA	4 cut(s)	235, 1908, 2545, 2570
CfoI	GCGC	2 cut(s)	245, 575
Cfr10I	RCCGGY	2 cut(s)	1166, 1424
Cfr13I	GGNCC	2 cut(s)	537, 2499
Cfr42I	CCGCGG	1 cut(s)	961
ClaI	ATCGAT	1 cut(s)	900
CseI	GACGC	1 cut(s)	1932
Csp6I	GTAC	5 cut(s)	708, 1105, 1250, 1431, 2323
CspAI	ACCGGT	2 cut(s)	1166, 1424
CspCI	CAANNNNNGTGG	2 cut(s)	2370, 2405
CviQI	GTAC	5 cut(s)	708, 1105, 1250, 1431, 2323
DdeI	CTNAG	9 cut(s)	6, 578, 588, 1176, 1194, 1467, 1584, 1698, 2299
DpnI	GATC	6 cut(s)	212, 234, 753, 807, 2282, 2525
DpnII	GATC	6 cut(s)	210, 232, 751, 805, 2280, 2523
EaeI	YGGCCR	1 cut(s)	1939
Eam1104I	CTCTTC	3 cut(s)	622, 2369, 2497
EarI	CTCTTC	3 cut(s)	622, 2369, 2497
EciI	GGCGGA	1 cut(s)	852
Ecl136II	GAGCTC	2 cut(s)	302, 2362
Eco130I	CCWWGG	4 cut(s)	1044, 1662, 1962, 2071
Eco24I	GRGCYC	3 cut(s)	304, 1227, 2364
Eco32I	GATATC	3 cut(s)	904, 993, 1494
Eco53kI	GAGCTC	2 cut(s)	302, 2362
Eco57I	CTGAAG	1 cut(s)	344
Eco81I	CCTNAGG	1 cut(s)	1467
EcoICRI	GAGCTC	2 cut(s)	302, 2362
EcoRI	GAATTC	1 cut(s)	496
EcoRII	CCWGG	4 cut(s)	1069, 1345, 1990, 2158
EcoRV	GATATC	3 cut(s)	904, 993, 1494
EcoT14I	CCWWGG	4 cut(s)	1044, 1662, 1962, 2071
EcoT38I	GRGCYC	3 cut(s)	304, 1227, 2364
ErhI	CCWWGG	4 cut(s)	1044, 1662, 1962, 2071
Esp3I	CGTCTC	3 cut(s)	1122, 1587, 2160
FalI	AAGNNNNNCTT	4 cut(s)	1277, 1309, 2055, 2087
FaqI	GGGAC	5 cut(s)	283, 635, 782, 1063, 2244
FauI	CCCGC	1 cut(s)	2195
FbaI	TGATCA	2 cut(s)	232, 805
Fnu4HI	GCNGC	5 cut(s)	180, 958, 1574, 1794, 1797
FokI	GGATG	6 cut(s)	1219, 1415, 1775, 1844, 2047, 2540
FriOI	GRGCYC	3 cut(s)	304, 1227, 2364
Fsp4HI	GCNGC	5 cut(s)	180, 958, 1574, 1794, 1797
FspBI	CTAG	6 cut(s)	50, 273, 744, 851, 1182, 1721
GlaI	GCGC	2 cut(s)	244, 574
GluI	GCNGC	5 cut(s)	180, 958, 1574, 1794, 1797
GsuI	CTGGAG	1 cut(s)	1295
HaeII	RGCGCY	1 cut(s)	576
HaeIII	GGCC	6 cut(s)	538, 683, 1345, 1941, 2108, 2501
HapII	CCGG	6 cut(s)	129, 543, 653, 1167, 1425, 2024
HgaI	GACGC	1 cut(s)	1932
HhaI	GCGC	2 cut(s)	245, 575
Hin6I	GCGC	2 cut(s)	243, 573
HinP1I	GCGC	2 cut(s)	243, 573
HincII	GTYRAC	2 cut(s)	1264, 1716
HindII	GTYRAC	2 cut(s)	1264, 1716
HpaII	CCGG	6 cut(s)	129, 543, 653, 1167, 1425, 2024
HphI	GGTGA	3 cut(s)	1033, 1181, 2142
Hpy166II	GTNNAC	9 cut(s)	469, 710, 1172, 1264, 1415, 1618, 1709, 1716, 2150
Hpy188I	TCNGA	7 cut(s)	107, 519, 661, 1324, 1356, 1587, 2523
Hpy8I	GTNNAC	9 cut(s)	469, 710, 1172, 1264, 1415, 1618, 1709, 1716, 2150
HpyAV	CCTTC	5 cut(s)	673, 882, 1192, 1197, 1433
HpyCH4IV	ACGT	1 cut(s)	1705
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 840, 1306, 1383, 1793
HpyF3I	CTNAG	9 cut(s)	6, 578, 588, 1176, 1194, 1467, 1584, 1698, 2299
HpySE526I	ACGT	1 cut(s)	1705
HspAI	GCGC	2 cut(s)	243, 573
Ksp22I	TGATCA	2 cut(s)	232, 805
KspI	CCGCGG	1 cut(s)	961
Kzo9I	GATC	6 cut(s)	210, 232, 751, 805, 2280, 2523
LguI	GCTCTTC	1 cut(s)	2369
LmnI	GCTCC	8 cut(s)	17, 66, 299, 1314, 1320, 1379, 1581, 2359
Lsp1109I	GCAGC	2 cut(s)	166, 1783
LweI	GCATC	4 cut(s)	254, 658, 1138, 1774
MaeI	CTAG	6 cut(s)	50, 273, 744, 851, 1182, 1721
MaeII	ACGT	1 cut(s)	1705
MaeIII	GTNAC	4 cut(s)	286, 1234, 1828, 2044
MalI	GATC	6 cut(s)	212, 234, 753, 807, 2282, 2525
MboI	GATC	6 cut(s)	210, 232, 751, 805, 2280, 2523
MfeI	CAATTG	1 cut(s)	1434
MflI	RGATCY	2 cut(s)	2280, 2523
MhlI	GDGCHC	4 cut(s)	304, 1227, 2001, 2364
MlsI	TGGCCA	1 cut(s)	1941
MluNI	TGGCCA	1 cut(s)	1941
MlyI	GAGTC	1 cut(s)	41
Mox20I	TGGCCA	1 cut(s)	1941
MscI	TGGCCA	1 cut(s)	1941
MseI	TTAA	6 cut(s)	264, 693, 1007, 1052, 1364, 1653
MslI	CAYNNNNRTG	2 cut(s)	972, 1757
Msp20I	TGGCCA	1 cut(s)	1941
MspA1I	CMGCKG	4 cut(s)	364, 960, 1377, 2303
MspI	CCGG	6 cut(s)	129, 543, 653, 1167, 1425, 2024
MspR9I	CCNGG	6 cut(s)	544, 653, 1071, 1347, 1992, 2160
MunI	CAATTG	1 cut(s)	1434
Mva1269I	GAATGC	1 cut(s)	1337
MvaI	CCWGG	4 cut(s)	1071, 1347, 1992, 2160
MvnI	CGCG	1 cut(s)	960
MwoI	GCNNNNNNNGC	5 cut(s)	11, 840, 1306, 1383, 1793
NciI	CCSGG	2 cut(s)	544, 653
NcoI	CCATGG	1 cut(s)	1962
NdeII	GATC	6 cut(s)	210, 232, 751, 805, 2280, 2523
NheI	GCTAGC	1 cut(s)	49
NlaIV	GGNNCC	3 cut(s)	1577, 1998, 2282
NspI	RCATGY	1 cut(s)	2226
NspV	TTCGAA	1 cut(s)	85
PaeI	GCATGC	1 cut(s)	2226
PagI	TCATGA	4 cut(s)	235, 1908, 2545, 2570
PasI	CCCWGGG	1 cut(s)	1991
PciSI	GCTCTTC	1 cut(s)	2369
PctI	GAATGC	1 cut(s)	1337
PflMI	CCANNNNNTGG	3 cut(s)	492, 1775, 2201
PfoI	TCCNGGA	2 cut(s)	651, 1069
PinAI	ACCGGT	2 cut(s)	1166, 1424
PkrI	GCNGC	5 cut(s)	181, 959, 1575, 1795, 1798
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PshBI	ATTAAT	1 cut(s)	1364
Psp124BI	GAGCTC	2 cut(s)	304, 2364
Psp6I	CCWGG	4 cut(s)	1069, 1345, 1990, 2158
PspGI	CCWGG	4 cut(s)	1069, 1345, 1990, 2158
PspN4I	GGNNCC	3 cut(s)	1577, 1998, 2282
PspPI	GGNCC	2 cut(s)	537, 2499
PsrI	GAACNNNNNNTAC	2 cut(s)	1608, 1640
PstI	CTGCAG	2 cut(s)	184, 2062
PstNI	CAGNNNCTG	1 cut(s)	2066
PsuI	RGATCY	2 cut(s)	2280, 2523
PvuII	CAGCTG	2 cut(s)	364, 2303
RsaI	GTAC	5 cut(s)	709, 1106, 1251, 1432, 2324
RsaNI	GTAC	5 cut(s)	708, 1105, 1250, 1431, 2323
RseI	CAYNNNNRTG	2 cut(s)	972, 1757
SacI	GAGCTC	2 cut(s)	304, 2364
SacII	CCGCGG	1 cut(s)	961
SapI	GCTCTTC	1 cut(s)	2369
SaqAI	TTAA	6 cut(s)	264, 693, 1007, 1052, 1364, 1653
SatI	GCNGC	5 cut(s)	180, 958, 1574, 1794, 1797
Sau3AI	GATC	6 cut(s)	210, 232, 751, 805, 2280, 2523
Sau96I	GGNCC	2 cut(s)	537, 2499
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	6 cut(s)	544, 653, 1071, 1347, 1992, 2160
SduI	GDGCHC	4 cut(s)	304, 1227, 2001, 2364
SfaNI	GCATC	4 cut(s)	254, 658, 1138, 1774
SfcI	CTRYAG	2 cut(s)	180, 2058
Sfr303I	CCGCGG	1 cut(s)	961
SfuI	TTCGAA	1 cut(s)	85
SgrAI	CRCCGGYG	1 cut(s)	1166
SgrBI	CCGCGG	1 cut(s)	961
SmiMI	CAYNNNNRTG	2 cut(s)	972, 1757
SmlI	CTYRAG	4 cut(s)	97, 303, 600, 1979
SmoI	CTYRAG	4 cut(s)	97, 303, 600, 1979
SpeI	ACTAGT	1 cut(s)	1181
SphI	GCATGC	1 cut(s)	2226
SsiI	CCGC	7 cut(s)	863, 958, 960, 1377, 1573, 1793, 2188
SspI	AATATT	2 cut(s)	161, 1033
SspMI	CTAG	6 cut(s)	50, 273, 744, 851, 1182, 1721
SstI	GAGCTC	2 cut(s)	304, 2364
StyD4I	CCNGG	6 cut(s)	542, 651, 1069, 1345, 1990, 2158
StyI	CCWWGG	4 cut(s)	1044, 1662, 1962, 2071
TaiI	ACGT	1 cut(s)	1708
TaqI	TCGA	5 cut(s)	85, 900, 972, 2467, 2531
TatI	WGTACW	3 cut(s)	707, 1249, 2322
TauI	GCSGC	3 cut(s)	960, 1576, 1796
Tru1I	TTAA	6 cut(s)	264, 693, 1007, 1052, 1364, 1653
Tru9I	TTAA	6 cut(s)	264, 693, 1007, 1052, 1364, 1653
TscAI	CASTG	5 cut(s)	421, 1462, 1702, 1821, 2325
TseI	GCWGC	2 cut(s)	179, 1796
TspGWI	ACGGA	2 cut(s)	2293, 2467
TspRI	CASTG	5 cut(s)	421, 1462, 1702, 1821, 2325
Van91I	CCANNNNNTGG	3 cut(s)	492, 1775, 2201
VspI	ATTAAT	1 cut(s)	1364
XapI	RAATTY	6 cut(s)	496, 821, 1610, 2091, 2239, 2537
XbaI	TCTAGA	1 cut(s)	743
XceI	RCATGY	1 cut(s)	2226
XcmI	CCANNNNNNNNNTGG	2 cut(s)	566, 2202
XspI	CTAG	6 cut(s)	50, 273, 744, 851, 1182, 1721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.