Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0011602

Physical Location & Seq

Genomic Coordinates Forward (+)

55130502 .. 55134503

Gene Structure 4002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG292800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCTAGAGGTTAGCAGGAGAGAAAAGGAAGCAGGAATTGTTCCTGATCCAGATATTGACACCTACATGAAGGCAATCTCAGTTGAAGGACAAAAGAAAAACCTCCAAACTGACTATGTTTTGAAGGTAATCTCAAAGAAGGATCAAGCACAATACTGGAAGCATGATAACATTCCCTATGATTATGTTTCTGTGGACAAATTCTCTCAGCTTTTCAGAGCAAGTTACATGGGAAAGAAGTTAATTGATGAGCTCTCAAAACCATATGAGAAATCACCGGGCCAAGATAAGGCTTTATCATTTAGCATCTACTCTGTCAGAAAATGGGAATTGTTCAAAGCTTGCATGGGTAGAGAGCTGCTTCTTATGAAACGAAATTCCTTTGTTTATGTGTTCAAAACAGCGCAGTTTACCTCTGAGCTCTACCTAAATACAGCTCCAAAGATGTCTCGTGCTATTATTTCGAAAAAAAGATTATCTCAACTCAAAGGACAAGATTCTTGGAACAAGACCGGTGCAAAGTCAGATAATGTATCAACTCCAGCTGATTTTTCCCAAACCATGGAAGAAACAGGGAAGATGGTTCTGCCATTTGAGCCGCTGACAATCTCATTTAAGGATGTGCAGTACAGTGTTGACATCCCACCGAGACACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

219

Amino Acids

25.25

Weight (kDa)

9.31

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011602)

Species	Orthologous Gene IDs
malus_domestica	MD09G1044500.v1.1
pyrus_communis	pycom04g16560
rosa_chinensis	RchiOBHm_Chr2g0169401
rosa_multiflora	Rmu_co8440651.1_g000001 Rmu_co8502923.1_g000001 Rmu_sc0019699.1_g000001
rosa_samantha	Rh2BG624000 Rh2BG624200 Rh2BG624300 Rh2BG624400 Rh2CG592300 Rh2CG592600 Rh2CG592900 Rh2CG593100 Rh3BG089500 Rh3DG090500 Rh4BG278600 Rh4CG292700 Rh4CG292800 Rh4CG293900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	562
AciI	CCGC	1 cut(s)	599
AclWI	GGATC	2 cut(s)	41, 150
AcsI	RAATTY	2 cut(s)	200, 376
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	2 cut(s)	289, 562
AgeI	ACCGGT	1 cut(s)	512
AgsI	TTSAA	4 cut(s)	86, 124, 337, 397
AluBI	AGCT	7 cut(s)	211, 253, 341, 358, 421, 437, 545
AluI	AGCT	7 cut(s)	211, 253, 341, 358, 421, 437, 545
Alw21I	GWGCWC	2 cut(s)	255, 423
Alw26I	GTCTC	2 cut(s)	453, 643
AlwI	GGATC	2 cut(s)	41, 150
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	2 cut(s)	200, 376
AsiGI	ACCGGT	1 cut(s)	512
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	1 cut(s)	280
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	267
AsuII	TTCGAA	1 cut(s)	464
BanII	GRGCYC	2 cut(s)	255, 423
BauI	CACGAG	1 cut(s)	450
Bbv12I	GWGCWC	2 cut(s)	255, 423
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	453, 643
BfaI	CTAG	1 cut(s)	5
BisI	GCNGC	2 cut(s)	359, 599
BlsI	GCNGC	2 cut(s)	360, 600
Bme1390I	CCNGG	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	525
Bpu14I	TTCGAA	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	561
BsaWI	WCCGGW	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 562
Bse118I	RCCGGY	1 cut(s)	512
Bse1I	ACTGG	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	2 cut(s)	625, 639
BseLI	CCNNNNNNNGG	2 cut(s)	289, 562
BseMII	CTCAG	3 cut(s)	93, 221, 408
BseNI	ACTGG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	345
BsgI	GTGCAG	1 cut(s)	644
BshFI	GGCC	1 cut(s)	282
BshTI	ACCGGT	1 cut(s)	512
BsiHKAI	GWGCWC	2 cut(s)	255, 423
BsiSI	CCGG	2 cut(s)	278, 513
BslI	CCNNNNNNNGG	2 cut(s)	289, 562
BsmAI	GTCTC	2 cut(s)	453, 643
BsnI	GGCC	1 cut(s)	282
Bsp119I	TTCGAA	1 cut(s)	464
Bsp1286I	GDGCHC	2 cut(s)	255, 423
Bsp143I	GATC	2 cut(s)	46, 142
Bsp19I	CCATGG	1 cut(s)	561
BspACI	CCGC	1 cut(s)	599
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	3 cut(s)	92, 220, 409
BspPI	GGATC	2 cut(s)	41, 150
BspT104I	TTCGAA	1 cut(s)	464
BsrFI	RCCGGY	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	512
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	2 cut(s)	46, 142
BssSI	CACGAG	1 cut(s)	450
BssT1I	CCWWGG	1 cut(s)	561
Bst2BI	CACGAG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	632, 656
BstBI	TTCGAA	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	3 cut(s)	79, 207, 417
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	2 cut(s)	625, 639
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	2 cut(s)	49, 145
BstMAI	GTCTC	2 cut(s)	453, 643
BstMBI	GATC	2 cut(s)	46, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	595
BstSCI	CCNGG	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	625, 639
BtsIMutI	CAGTG	1 cut(s)	637
Cac8I	GCNNGC	1 cut(s)	343
CfoI	GCGC	1 cut(s)	406
Cfr10I	RCCGGY	1 cut(s)	512
Cfr13I	GGNCC	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	628
CspAI	ACCGGT	1 cut(s)	512
CviAII	CATG	5 cut(s)	67, 164, 229, 346, 562
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	3 cut(s)	79, 207, 417
DpnI	GATC	2 cut(s)	48, 144
DpnII	GATC	2 cut(s)	46, 142
Ecl136II	GAGCTC	2 cut(s)	253, 421
Eco130I	CCWWGG	1 cut(s)	561
Eco24I	GRGCYC	2 cut(s)	255, 423
Eco53kI	GAGCTC	2 cut(s)	253, 421
EcoICRI	GAGCTC	2 cut(s)	253, 421
EcoT14I	CCWWGG	1 cut(s)	561
EcoT38I	GRGCYC	2 cut(s)	255, 423
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	5 cut(s)	70, 167, 232, 349, 565
FatI	CATG	5 cut(s)	66, 163, 228, 345, 561
FauNDI	CATATG	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	359, 599
FokI	GGATG	2 cut(s)	626, 632
FriOI	GRGCYC	2 cut(s)	255, 423
Fsp4HI	GCNGC	2 cut(s)	359, 599
FspBI	CTAG	1 cut(s)	5
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	2 cut(s)	359, 599
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	2 cut(s)	278, 513
HhaI	GCGC	1 cut(s)	406
Hin1II	CATG	5 cut(s)	70, 167, 232, 349, 565
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	1 cut(s)	497
HpaII	CCGG	2 cut(s)	278, 513
HphI	GGTGA	1 cut(s)	267
Hpy166II	GTNNAC	3 cut(s)	196, 411, 637
Hpy188I	TCNGA	4 cut(s)	218, 320, 418, 526
Hpy188III	TCNNGA	2 cut(s)	44, 50
Hpy8I	GTNNAC	3 cut(s)	196, 411, 637
HpyAV	CCTTC	4 cut(s)	64, 80, 118, 133
HpyCH4III	ACNGT	2 cut(s)	632, 656
HpyCH4V	TGCA	3 cut(s)	345, 518, 625
HpyF10VI	GCNNNNNNNGC	1 cut(s)	595
HpyF3I	CTNAG	3 cut(s)	79, 207, 417
Hsp92II	CATG	5 cut(s)	70, 167, 232, 349, 565
HspAI	GCGC	1 cut(s)	404
Kzo9I	GATC	2 cut(s)	46, 142
LmnI	GCTCC	1 cut(s)	442
LpnPI	CCDG	8 cut(s)	18, 57, 63, 142, 291, 526, 555, 558
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	2 cut(s)	48, 144
MboI	GATC	2 cut(s)	46, 142
MboII	GAAGA	2 cut(s)	578, 589
MhlI	GDGCHC	2 cut(s)	255, 423
MluCI	AATT	5 cut(s)	36, 200, 243, 329, 376
MnlI	CCTC	2 cut(s)	113, 424
MseI	TTAA	2 cut(s)	242, 615
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	2 cut(s)	545, 601
MspI	CCGG	2 cut(s)	278, 513
MspR9I	CCNGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	595
NciI	CCSGG	1 cut(s)	279
NcoI	CCATGG	1 cut(s)	561
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	2 cut(s)	46, 142
NlaIII	CATG	5 cut(s)	70, 167, 232, 349, 565
NspV	TTCGAA	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	497
PflMI	CCANNNNNTGG	1 cut(s)	562
PinAI	ACCGGT	1 cut(s)	512
PkrI	GCNGC	2 cut(s)	360, 600
Psp124BI	GAGCTC	2 cut(s)	255, 423
PspPI	GGNCC	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	2 cut(s)	255, 423
SaqAI	TTAA	2 cut(s)	242, 615
SatI	GCNGC	2 cut(s)	359, 599
Sau3AI	GATC	2 cut(s)	46, 142
Sau96I	GGNCC	1 cut(s)	280
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	2 cut(s)	255, 423
SfaNI	GCATC	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	5 cut(s)	36, 200, 243, 329, 376
SsiI	CCGC	1 cut(s)	599
SspMI	CTAG	1 cut(s)	5
SstI	GAGCTC	2 cut(s)	255, 423
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	2 cut(s)	632, 656
TaqI	TCGA	1 cut(s)	464
TasI	AATT	5 cut(s)	36, 200, 243, 329, 376
TatI	WGTACW	1 cut(s)	627
TauI	GCSGC	1 cut(s)	601
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	2 cut(s)	242, 615
Tru9I	TTAA	2 cut(s)	242, 615
TscAI	CASTG	1 cut(s)	637
TseI	GCWGC	1 cut(s)	358
TspDTI	ATGAA	2 cut(s)	83, 383
TspRI	CASTG	1 cut(s)	637
Van91I	CCANNNNNTGG	1 cut(s)	562
XapI	RAATTY	2 cut(s)	200, 376
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.